%global octpkg iso2mesh
Name: octave-%{octpkg}
Version: 1.9.1
Release: 3%{?dist}
Summary: A 3D surface and volumetric mesh generator for MATLAB/Octave
# Main package: GPLv3+
# Meshfix: GPLv2+
# JMeshLib: GPLv2+
# Tetgen: AGPLv3+
License: GPLv3+ and GPLv2+ and AGPLv3+
URL: http://iso2mesh.sf.net
# the following utilities are called internally by iso2mesh (stored under a private folder),
# this is needed for making outputs reproducible
Source0: https://github.com/fangq/iso2mesh/archive/v%{version}/%{octpkg}-%{version}.tar.gz
Source1: https://github.com/fangq/cork/archive/v0.9/cork-0.9.tar.gz
Source2: https://github.com/fangq/meshfix/archive/v1.2.1/meshfix-1.2.1.tar.gz
Source3: http://ftp.mcs.anl.gov/pub/petsc/externalpackages/tetgen1.5.1.tar.gz
Patch0: meshfix-remove-rpath.patch
ExcludeArch: armv7hl
BuildRequires: cmake CGAL-devel SuperLU-devel blas-static gcc-c++ zlib-devel octave-devel
%if 0%{?fedora} >=32
Requires: octave mpfr-devel boost-devel SuperLU octave-jsonlab octave-jnifti octave-zmat
%else
Requires: octave CGAL SuperLU octave-jsonlab octave-jnifti octave-zmat
%endif
Requires(post): octave
Requires(postun): octave
%description
Iso2Mesh is a MATLAB/Octave-based mesh generation toolbox,
designed for easy creation of high quality surface and
tetrahedral meshes from 3D volumetric images. It contains
a rich set of mesh processing scripts/programs, working
either independently or interacting with external free
meshing utilities. Iso2Mesh toolbox can directly convert
a 3D image stack, including binary, segmented or gray-scale
images such as MRI or CT scans, into quality volumetric
meshes. This makes it particularly suitable for multi-modality
medical imaging data analysis and multi-physics modeling.
Iso2Mesh is cross-platform and is compatible with both MATLAB
and GNU Octave.
%package -n %{octpkg}-demos
Summary: Example datasets and scripts for the Iso2Mesh toolbox
BuildArch: noarch
Requires: octave octave-%{octpkg}
Recommends: %{octpkg}-demos
%description -n %{octpkg}-demos
This package contains the demo script and sample datasets for octave-%{octpkg}.
%prep
%setup -q -b 1 -n %{octpkg}-%{version}
%setup -q -T -D -b 2 -n meshfix-1.2.1
%patch0 -p1
%setup -q -T -D -b 3 -n %{octpkg}-%{version}
rm -rf tools/cork
rm -rf tools/meshfix
rm -rf tools/tetgen
mv ../cork-0.9 tools/cork
mv ../meshfix-1.2.1 tools/meshfix
mv ../tetgen1.5.1 tools/tetgen
rm -rf bin/*.mex* bin/*.exe bin/*.dll
cp COPYING.txt COPYING
cat > DESCRIPTION << EOF
Name: %{octpkg}
Version: %{version}
Date: %(date +"%Y-%d-%m")
Title: %{summary}
Author: Qianqian Fang <fangqq@gmail.com>
Maintainer: Qianqian Fang <fangqq@gmail.com>
Description: Iso2Mesh is a MATLAB/Octave-based mesh generation toolbox,
designed for easy creation of high quality surface and
tetrahedral meshes from 3D volumetric images. It contains
a rich set of mesh processing scripts/programs, working
either independently or interacting with external free
meshing utilities. Iso2Mesh toolbox can directly convert
a 3D image stack, including binary, segmented or gray-scale
images such as MRI or CT scans, into quality volumetric
meshes. This makes it particularly suitable for multi-modality
medical imaging data analysis and multi-physics modeling.
Iso2Mesh is cross-platform and is compatible with both MATLAB
and GNU Octave.
URL: %{url}
Depends: jnifti, jsonlab, zmat
Categories: Mesh
EOF
cat > INDEX << EOF
iso2mesh >> Iso2Mesh
Iso2Mesh
advancefront
barydualmesh
bbxflatsegment
binsurface
bwislands
cgals2m
cgalv2m
deislands2d
deislands3d
delendelem
deletemeshfile
edgeneighbors
elemfacecenter
elemvolume
extractloops
extrudecurve
extrudesurf
faceneighbors
fallbackexeext
fillholes3d
fillsurf
finddisconnsurf
flatsegment
getexeext
getintersecttri
getoptkey
getplanefrom3pt
getvarfrom
highordertet
i2m
imedge3d
img2mesh
innersurf
insurface
internalpoint
iso2meshver
isoctavemesh
jsonopt
latticegrid
m2v
maskdist
maxsurf
mcpath
memmapstream
mergemesh
mergestruct
mergesurf
mesh2mask
mesh2vol
meshabox
meshacylinder
meshanellip
meshasphere
meshcentroid
meshcheckrepair
meshconn
meshcylinders
meshedge
mesheuler
meshface
meshgrid5
meshgrid6
meshinterp
meshquality
meshrefine
meshremap
meshreorient
meshresample
meshunitsphere
mwpath
neighborelem
nodevolume
orderloopedge
orthdisk
outersurf
plotedges
plotmesh
plotsurf
plottetra
qmeshcut
raysurf
raytrace
readasc
readgts
readinr
readmedit
readmptiff
readnirfast
readoff
readsmf
readtetgen
remeshsurf
removedupelem
removedupnodes
removeisolatednode
removeisolatedsurf
rotatevec3d
rotmat2vec
s2m
s2v
saveabaqus
saveasc
savebinstl
savedxf
savegts
saveinr
savejmesh
savejson
savemedit
savemphtxt
savemsh
savenirfast
saveoff
savesmf
savestl
savesurfpoly
savetetgenele
savetetgennode
savevrml
smoothbinvol
smoothsurf
sms
sortmesh
surf2mesh
surf2vol
surf2volz
surfaceclean
surfacenorm
surfboolean
surfdiffuse
surfedge
surfinterior
surfpart
surfplane
surfreorient
surfseeds
surfvolume
thickenbinvol
thinbinvol
uniqedges
uniqfaces
v2m
v2s
varargin2struct
vol2mesh
vol2restrictedtri
vol2surf
volface
volmap2mesh
EOF
mkdir -p inst/
rm -rf base64decode base64encode fast_match_bracket gzipdecode gzipencode \
jdatadecode jdataencode jnifticreate loadjnifti loadjson loadmsgpack \
loadnifti loadubjson lz4decode lz4encode lz4hcdecode lz4hcencode lzipdecode \
lzipencode lzmadecode lzmaencode match_bracket nestbracket2dim nifticreate \
nii2jnii niicodemap niiformat readnifti savebnii savejnifti savejnii \
savemsgpack savenifti saveubjson zlibdecode zlibencode
mv *.m inst/
mv img2mesh.fig inst/
%build
%set_build_flags
pushd tools
# can't use make_build macro below because parallel make with CGAL exhausts
# vm's memory and crash the building process, use sequential make instead
make
popd
pushd bin
ln -s tetgen1.5 tetgen
popd
mkdir inst/bin
pushd bin
for exec in *; do
ln -s %{_libexecdir}/%{octpkg}/$exec ../inst/bin/$exec
done
popd
%octave_pkg_build
%if 0%{?fedora} <=30
%global octave_tar_suffix any-none
%endif
%install
%octave_pkg_install
install -m 0755 -vd %{buildroot}%{_libexecdir}/%{octpkg}
install -m 0755 -vp bin/* %{buildroot}%{_libexecdir}/%{octpkg}/
%post
%octave_cmd pkg rebuild
%preun
%octave_pkg_preun
%postun
%octave_cmd pkg rebuild
%files
%license COPYING.txt
%doc README.txt
%doc Content.txt
%doc AUTHORS.txt
%doc ChangeLog.txt
%dir %{octpkgdir}
%dir %{octpkgdir}/doc
%dir %{octpkgdir}/bin
%{_libexecdir}/%{octpkg}
%{octpkgdir}/doc/*
%{octpkgdir}/bin/*
%{octpkgdir}/*.m
%{octpkgdir}/*.fig
%doc %{octpkgdir}/doc-cache
%{octpkgdir}/packinfo
%files -n %{octpkg}-demos
%license COPYING.txt
%doc sample
%changelog
* Fri Oct 11 2019 Qianqian Fang <fangqq@gmail.com> - 1.9.1-3
- Define octave package-level dependency via the DESCRIPTION file
- Remove gmp-devel from Requires
* Thu Oct 10 2019 Qianqian Fang <fangqq@gmail.com> - 1.9.1-2
- Fix licenses
- Move binaries to libexec
* Wed Oct 02 2019 Qianqian Fang <fangqq@gmail.com> - 1.9.1-1
- Initial package