The files in this directory are bugfix replacements for files in
the EMBOSS-6.3.1 distribution. Just drop the replacement files in
the location shown and redo the 'make install.'
Fix 1. EMBOSS-6.3.1/configure
EMBOSS-6.3.1/m4/mysql.m4
21 Jul 2010: Addresses a problem whereby, in some circumstances, inclusion of
hpdf support prevented inclusion of MySQL support.
Using the mysql.m4 from this patch may cause a libtool
error during compilation if you have a version of libtool
greater than 2.2.6b on your system. If this happens type
"autoreconf -fi" after adding the file. Note that you
do not need to use the mysql.m4 file and it is probably
safer not to; just use the configure file.
Fix 2. EMBOSS-6.3.1/configure
6 Aug 2010: This is exactly the same as Fix 1 above, but the associated
file in the patches directory does not contain the
mysql.m4 file - it is unnecessary for the operation of the
EMBOSS distribution. Using this patch will not cause the
libtool problem described above.
Fix 3. EMBOSS-6.3.1/ajax/graphics/ajgraph.c
9 Aug 2010: Fix potential crash using -debug
Fix 4. EMBOSS-6.3.1/ajax/ensembl/ensregistry.c
EMBOSS-6.3.1/ajax/ajaxdb/ajseqdb.c.c
9 Aug 2010: Allow two Ensembl sequences to be loaded without re-registering.
Fix Ensembl Genomes registration.
Fix Ensembl Genomes identifiers for species without stable
identifiers. If the identifier does not obey a stable identifier
pattern, it is matched against Exons, Transcripts and
Translations in exactly that order.