diff -up EMBOSS-6.2.0/aclocal.m4.system-plplot EMBOSS-6.2.0/aclocal.m4
--- EMBOSS-6.2.0/aclocal.m4.system-plplot	2010-04-07 12:06:27.463631022 -0400
+++ EMBOSS-6.2.0/aclocal.m4	2010-04-07 12:06:46.105630532 -0400
@@ -8903,6 +8903,7 @@ m4_include([m4/general.m4])
 m4_include([m4/java.m4])
 m4_include([m4/lf_x11.m4])
 m4_include([m4/mysql.m4])
+m4_include([m4/plplot.m4])
 m4_include([m4/pngdriver.m4])
 m4_include([m4/postgresql.m4])
 m4_include([m4/sgi.m4])
diff -up EMBOSS-6.2.0/ajax/acd/Makefile.am.system-plplot EMBOSS-6.2.0/ajax/acd/Makefile.am
--- EMBOSS-6.2.0/ajax/acd/Makefile.am.system-plplot	2010-04-07 12:06:27.650744586 -0400
+++ EMBOSS-6.2.0/ajax/acd/Makefile.am	2010-04-07 12:06:27.741735646 -0400
@@ -12,7 +12,7 @@ CYGWIN_LDACD = -L../../plplot -L../pcre 
 -leplplot -leexpat -lepcre -lezlib
 endif
 
-INCLUDES = -I$(top_srcdir)/plplot \
+INCLUDES = $(PLPLOT_CFLAGS) \
 -I$(top_srcdir)/ajax/expat \
 -I$(top_srcdir)/ajax/core \
 -I$(top_srcdir)/ajax/graphics \
diff -up EMBOSS-6.2.0/ajax/acd/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/acd/Makefile.in
--- EMBOSS-6.2.0/ajax/acd/Makefile.in.system-plplot	2010-04-07 12:06:27.651761906 -0400
+++ EMBOSS-6.2.0/ajax/acd/Makefile.in	2010-04-07 12:10:21.118610767 -0400
@@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -166,6 +167,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
@@ -247,7 +250,7 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL
 @ISCYGWIN_TRUE@-L../graphics -L../ensembl -L../ajaxdb -lajaxdb -lensembl -lajaxg -lajax \
 @ISCYGWIN_TRUE@-leplplot -leexpat -lepcre -lezlib
 
-INCLUDES = -I$(top_srcdir)/plplot \
+INCLUDES = $(PLPLOT_CFLAGS) \
 -I$(top_srcdir)/ajax/expat \
 -I$(top_srcdir)/ajax/core \
 -I$(top_srcdir)/ajax/graphics \
diff -up EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am.system-plplot EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am
--- EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am.system-plplot	2010-04-07 12:06:27.652757995 -0400
+++ EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am	2010-04-07 12:06:27.743735506 -0400
@@ -11,7 +11,7 @@ CYGWIN_LDAJAXDB = -L../../plplot -L../pc
 -L../ensembl -lensembl lajax -leplplot -leexpat -lepcre -lezlib
 endif
 
-INCLUDES = -I$(top_srcdir)/plplot \
+INCLUDES = $(PLPLOT_CFLAGS) \
 -I$(top_srcdir)/ajax/expat \
 -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl
 
diff -up EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in
--- EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in.system-plplot	2010-04-07 12:06:27.653756808 -0400
+++ EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in	2010-04-07 12:10:21.257610488 -0400
@@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -166,6 +167,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
@@ -246,7 +249,7 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL
 @ISCYGWIN_TRUE@CYGWIN_LDAJAXDB = -L../../plplot -L../pcre -L../expat -L../zlib -L../core \
 @ISCYGWIN_TRUE@-L../ensembl -lensembl lajax -leplplot -leexpat -lepcre -lezlib
 
-INCLUDES = -I$(top_srcdir)/plplot \
+INCLUDES = $(PLPLOT_CFLAGS) \
 -I$(top_srcdir)/ajax/expat \
 -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl
 
diff -up EMBOSS-6.2.0/ajax/core/Makefile.am.system-plplot EMBOSS-6.2.0/ajax/core/Makefile.am
--- EMBOSS-6.2.0/ajax/core/Makefile.am.system-plplot	2010-04-07 12:06:27.654763792 -0400
+++ EMBOSS-6.2.0/ajax/core/Makefile.am	2010-04-07 12:06:27.745735297 -0400
@@ -13,7 +13,7 @@ endif
 
 INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \
 -DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \
--I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat
+$(PLPLOT_CFLAGS) -I$(top_srcdir)/ajax/expat
 
 AJAXSRC = ajalign.c ajarr.c ajassert.c \
 ajbase.c ajcall.c ajcod.c \
diff -up EMBOSS-6.2.0/ajax/core/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/core/Makefile.in
--- EMBOSS-6.2.0/ajax/core/Makefile.in.system-plplot	2010-04-07 12:06:27.657737741 -0400
+++ EMBOSS-6.2.0/ajax/core/Makefile.in	2010-04-07 12:10:21.395610139 -0400
@@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -174,6 +175,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
@@ -256,7 +259,7 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL
 
 INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \
 -DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \
--I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat
+$(PLPLOT_CFLAGS) -I$(top_srcdir)/ajax/expat
 
 AJAXSRC = ajalign.c ajarr.c ajassert.c \
 ajbase.c ajcall.c ajcod.c \
diff -up EMBOSS-6.2.0/ajax/ensembl/Makefile.am.system-plplot EMBOSS-6.2.0/ajax/ensembl/Makefile.am
--- EMBOSS-6.2.0/ajax/ensembl/Makefile.am.system-plplot	2010-04-07 12:06:27.473610279 -0400
+++ EMBOSS-6.2.0/ajax/ensembl/Makefile.am	2010-04-07 12:06:27.748745703 -0400
@@ -9,7 +9,7 @@ CYGWIN_LDFLAGS = -no-undefined -Wl,--add
 CYGWIN_LDENSEMBL = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre
 endif
 
-INCLUDES = -I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat \
+INCLUDES = $(PLPLOT_CFLAGS) -I$(top_srcdir)/ajax/expat \
 -I$(top_srcdir)/ajax/core
 
 ENSEMBLSRC = ensanalysis.c ensassembly.c ensassemblyexception.c \
diff -up EMBOSS-6.2.0/ajax/ensembl/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/ensembl/Makefile.in
--- EMBOSS-6.2.0/ajax/ensembl/Makefile.in.system-plplot	2010-04-07 12:06:27.474611257 -0400
+++ EMBOSS-6.2.0/ajax/ensembl/Makefile.in	2010-04-07 12:10:21.502617053 -0400
@@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -179,6 +180,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
@@ -255,7 +258,7 @@ lib_LTLIBRARIES = libensembl.la
 AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFLAGS)
 @ISCYGWIN_TRUE@CYGWIN_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import
 @ISCYGWIN_TRUE@CYGWIN_LDENSEMBL = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre
-INCLUDES = -I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat \
+INCLUDES = $(PLPLOT_CFLAGS) -I$(top_srcdir)/ajax/expat \
 -I$(top_srcdir)/ajax/core
 
 ENSEMBLSRC = ensanalysis.c ensassembly.c ensassemblyexception.c \
diff -up EMBOSS-6.2.0/ajax/expat/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/expat/Makefile.in
--- EMBOSS-6.2.0/ajax/expat/Makefile.in.system-plplot	2010-04-07 12:06:27.476610209 -0400
+++ EMBOSS-6.2.0/ajax/expat/Makefile.in	2010-04-07 12:10:21.604610558 -0400
@@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -167,6 +168,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/ajax/graphics/ajgraph.c.system-plplot EMBOSS-6.2.0/ajax/graphics/ajgraph.c
--- EMBOSS-6.2.0/ajax/graphics/ajgraph.c.system-plplot	2010-01-08 07:41:06.000000000 -0500
+++ EMBOSS-6.2.0/ajax/graphics/ajgraph.c	2010-04-07 12:06:27.756735855 -0400
@@ -35,7 +35,7 @@
 #define AZ 28
 
 
-#include "plplotP.h"
+#include <plplotP.h>
 
 
 static void     GraphArray(ajuint numofpoints,
@@ -974,8 +974,8 @@ static void GraphSetName(const AjPGraph 
 {
     if(!thys->ready)
     {
-        ajDebug("=g= plxsfnam ('%S', '%s')\n", txt, ext);
-        plxsfnam(ajStrGetPtr(txt), ext);
+        ajDebug("=g= plsfnam ('%S')\n", txt);
+        plsfnam(ajStrGetPtr(txt));
         ajStrAssignS(&graphBasename, txt);
         ajStrAssignC(&graphExtension, ext);
         if(ajStrGetCharFirst(graphExtension) == '.')
diff -up EMBOSS-6.2.0/ajax/graphics/ajgraph.h.system-plplot EMBOSS-6.2.0/ajax/graphics/ajgraph.h
--- EMBOSS-6.2.0/ajax/graphics/ajgraph.h.system-plplot	2010-01-08 06:05:09.000000000 -0500
+++ EMBOSS-6.2.0/ajax/graphics/ajgraph.h	2010-04-07 12:06:27.758735646 -0400
@@ -26,7 +26,7 @@ extern "C"
 #ifndef ajgraph_h
 #define ajgraph_h
 
-#include "plplot.h"
+#include <plplot.h>
 #include "ajgraphstruct.h"
 #include "ajdefine.h"
 #include "ajstr.h"
diff -up EMBOSS-6.2.0/ajax/graphics/Makefile.am.system-plplot EMBOSS-6.2.0/ajax/graphics/Makefile.am
--- EMBOSS-6.2.0/ajax/graphics/Makefile.am.system-plplot	2010-04-07 12:06:27.477610349 -0400
+++ EMBOSS-6.2.0/ajax/graphics/Makefile.am	2010-04-07 12:06:27.759747729 -0400
@@ -9,7 +9,7 @@ CYGWIN_LDFLAGS = -no-undefined -Wl,--add
 CYGWIN_LDAJAXG = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre
 endif
 
-INCLUDES = -I$(top_srcdir)/plplot \
+INCLUDES = $(PLPLOT_CFLAGS) \
 -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/core
 
 AJAXGSRC = ajgraph.c ajhist.c
diff -up EMBOSS-6.2.0/ajax/graphics/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/graphics/Makefile.in
--- EMBOSS-6.2.0/ajax/graphics/Makefile.in.system-plplot	2010-04-07 12:06:27.479610279 -0400
+++ EMBOSS-6.2.0/ajax/graphics/Makefile.in	2010-04-07 12:10:21.791610767 -0400
@@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -166,6 +167,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
@@ -242,7 +245,7 @@ lib_LTLIBRARIES = libajaxg.la
 AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFLAGS)
 @ISCYGWIN_TRUE@CYGWIN_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import
 @ISCYGWIN_TRUE@CYGWIN_LDAJAXG = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre
-INCLUDES = -I$(top_srcdir)/plplot \
+INCLUDES = $(PLPLOT_CFLAGS) \
 -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/core
 
 AJAXGSRC = ajgraph.c ajhist.c
diff -up EMBOSS-6.2.0/ajax/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/Makefile.in
--- EMBOSS-6.2.0/ajax/Makefile.in.system-plplot	2010-04-07 12:06:27.662735436 -0400
+++ EMBOSS-6.2.0/ajax/Makefile.in	2010-04-07 12:10:21.020610278 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/autom4te.cache/output.0.system-plplot EMBOSS-6.2.0/autom4te.cache/output.0
--- EMBOSS-6.2.0/autom4te.cache/output.0.system-plplot	2010-04-07 12:06:27.504735017 -0400
+++ EMBOSS-6.2.0/autom4te.cache/output.0	2010-04-07 12:06:47.253735225 -0400
@@ -778,6 +778,8 @@ MYSQL_LDFLAGS
 MYSQL_CFLAGS
 MYSQL_VERSION
 MYSQL_CONFIG
+PLPLOT_LIBS
+PLPLOT_CFLAGS
 JAVA_OK
 havejavac
 AMPNG_FALSE
@@ -13769,6 +13771,204 @@ fi
 
 
 
+
+
+ 
+PLPLOT_LIBS=""
+OLIBS="$LIBS"
+LIBS=""
+ 
+check_plplot_ok=yes
+check_plplotpkg_ok=no
+if test x = x && test x = x; then
+  { $as_echo "$as_me:${as_lineno-$LINENO}: checking for PLPlot pkg-config info" >&5
+$as_echo_n "checking for PLPlot pkg-config info... " >&6; }
+  if pkg-config --exists plplotd; then
+    { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
+$as_echo "yes" >&6; }
+    PLPLOT_CFLAGS=`pkg-config --cflags plplotd`
+    PLPLOT_LIBS=`pkg-config --libs plplotd`
+    
+$as_echo "@%:@define PLPLOT_H \"plplot.h\"" >>confdefs.h
+
+    
+$as_echo "@%:@define PLPLOTP_H \"plplotP.h\"" >>confdefs.h
+
+    check_plplotpkg_ok=yes
+  else
+    { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+  fi
+fi
+if test x$check_plplotpkg_ok = xno; then
+  if test x = x; then
+    ac_fn_c_check_header_mongrel "$LINENO" "plplot.h" "ac_cv_header_plplot_h" "$ac_includes_default"
+if test "x$ac_cv_header_plplot_h" = x""yes; then :
+  check_plplothead_ok=yes
+else
+  check_plplothead_ok=no
+fi
+
+
+    if test x$check_plplothead_ok = xyes; then
+      
+$as_echo "@%:@define PLPLOT_H \"plplot.h\"" >>confdefs.h
+
+      
+$as_echo "@%:@define PLPLOTP_H \"plplotP.h\"" >>confdefs.h
+
+    else
+      ac_fn_c_check_header_mongrel "$LINENO" "plplot/plplot.h" "ac_cv_header_plplot_plplot_h" "$ac_includes_default"
+if test "x$ac_cv_header_plplot_plplot_h" = x""yes; then :
+  check_plplothead_ok=yes
+else
+  check_plplothead_ok=no
+fi
+
+
+      if test x$check_plplothead_ok = xyes; then
+        
+$as_echo "@%:@define PLPLOT_H \"plplot/plplot.h\"" >>confdefs.h
+
+        
+$as_echo "@%:@define PLPLOTP_H \"plplot/plplotP.h\"" >>confdefs.h
+
+      else
+        check_plplot_ok=no
+      fi
+    fi
+  else
+    ac_fn_c_check_header_mongrel "$LINENO" "/plplot.h" "ac_cv_header__plplot_h" "$ac_includes_default"
+if test "x$ac_cv_header__plplot_h" = x""yes; then :
+  check_plplothead_ok=yes
+else
+  check_plplothead_ok=no
+fi
+
+
+    if test x$check_plplothead_ok = xyes; then
+      
+$as_echo "@%:@define PLPLOT_H \"plplot.h\"" >>confdefs.h
+
+      
+$as_echo "@%:@define PLPLOTP_H \"plplotP.h\"" >>confdefs.h
+
+     PLPLOT_CFLAGS="-I"
+    else
+      check_plplot_ok=no
+    fi
+  fi
+  if test x = x; then
+    { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5
+$as_echo_n "checking for c_plinit in -lplplotd... " >&6; }
+if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then :
+  $as_echo_n "(cached) " >&6
+else
+  ac_check_lib_save_LIBS=$LIBS
+LIBS="-lplplotd  $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+
+/* Override any GCC internal prototype to avoid an error.
+   Use char because int might match the return type of a GCC
+   builtin and then its argument prototype would still apply.  */
+#ifdef __cplusplus
+extern "C"
+#endif
+char c_plinit ();
+int
+main ()
+{
+return c_plinit ();
+  ;
+  return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+  ac_cv_lib_plplotd_c_plinit=yes
+else
+  ac_cv_lib_plplotd_c_plinit=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+    conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5
+$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; }
+if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then :
+  cat >>confdefs.h <<_ACEOF
+@%:@define HAVE_LIBPLPLOTD 1
+_ACEOF
+
+  LIBS="-lplplotd $LIBS"
+
+else
+  check_plplot_ok=no
+fi
+
+    PLPLOT_LIBS="-lplplotd"
+  else
+    { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5
+$as_echo_n "checking for c_plinit in -lplplotd... " >&6; }
+if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then :
+  $as_echo_n "(cached) " >&6
+else
+  ac_check_lib_save_LIBS=$LIBS
+LIBS="-lplplotd -L $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+
+/* Override any GCC internal prototype to avoid an error.
+   Use char because int might match the return type of a GCC
+   builtin and then its argument prototype would still apply.  */
+#ifdef __cplusplus
+extern "C"
+#endif
+char c_plinit ();
+int
+main ()
+{
+return c_plinit ();
+  ;
+  return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+  ac_cv_lib_plplotd_c_plinit=yes
+else
+  ac_cv_lib_plplotd_c_plinit=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+    conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5
+$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; }
+if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then :
+  cat >>confdefs.h <<_ACEOF
+@%:@define HAVE_LIBPLPLOTD 1
+_ACEOF
+
+  LIBS="-lplplotd $LIBS"
+
+else
+  check_plplot_ok=no
+fi
+
+    PLPLOT_LIBS="-L -lplplotd"
+  fi
+fi
+ 
+LIBS="$OLIBS"
+if test x$check_plplot_ok = xyes; then
+  
+  
+  
+$as_echo "@%:@define HAVE_PLPLOT 1" >>confdefs.h
+
+fi
+ 
+
 #
 # Handle user hints
 #
@@ -15042,7 +15242,7 @@ fi
 
 
 
-ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/api/Makefile jemboss/api/org/Makefile jemboss/api/org/emboss/Makefile jemboss/api/org/emboss/jemboss/Makefile jemboss/api/org/emboss/jemboss/gui/Makefile jemboss/api/org/emboss/jemboss/gui/filetree/Makefile jemboss/api/org/emboss/jemboss/gui/form/Makefile jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/api/org/emboss/jemboss/gui/startup/Makefile jemboss/api/org/emboss/jemboss/parser/Makefile jemboss/api/org/emboss/jemboss/parser/acd/Makefile jemboss/api/org/emboss/jemboss/programs/Makefile jemboss/api/org/emboss/jemboss/soap/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/org/Makefile jemboss/org/emboss/Makefile jemboss/org/emboss/jemboss/Makefile jemboss/org/emboss/jemboss/graphics/Makefile jemboss/org/emboss/jemboss/gui/Makefile jemboss/org/emboss/jemboss/gui/filetree/Makefile jemboss/org/emboss/jemboss/gui/form/Makefile jemboss/org/emboss/jemboss/gui/startup/Makefile jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/org/emboss/jemboss/parser/Makefile jemboss/org/emboss/jemboss/parser/acd/Makefile jemboss/org/emboss/jemboss/programs/Makefile jemboss/org/emboss/jemboss/server/Makefile jemboss/org/emboss/jemboss/soap/Makefile jemboss/org/emboss/jemboss/editor/Makefile jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile"
+ac_config_files="$ac_config_files nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/api/Makefile jemboss/api/org/Makefile jemboss/api/org/emboss/Makefile jemboss/api/org/emboss/jemboss/Makefile jemboss/api/org/emboss/jemboss/gui/Makefile jemboss/api/org/emboss/jemboss/gui/filetree/Makefile jemboss/api/org/emboss/jemboss/gui/form/Makefile jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/api/org/emboss/jemboss/gui/startup/Makefile jemboss/api/org/emboss/jemboss/parser/Makefile jemboss/api/org/emboss/jemboss/parser/acd/Makefile jemboss/api/org/emboss/jemboss/programs/Makefile jemboss/api/org/emboss/jemboss/soap/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/org/Makefile jemboss/org/emboss/Makefile jemboss/org/emboss/jemboss/Makefile jemboss/org/emboss/jemboss/graphics/Makefile jemboss/org/emboss/jemboss/gui/Makefile jemboss/org/emboss/jemboss/gui/filetree/Makefile jemboss/org/emboss/jemboss/gui/form/Makefile jemboss/org/emboss/jemboss/gui/startup/Makefile jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/org/emboss/jemboss/parser/Makefile jemboss/org/emboss/jemboss/parser/acd/Makefile jemboss/org/emboss/jemboss/programs/Makefile jemboss/org/emboss/jemboss/server/Makefile jemboss/org/emboss/jemboss/soap/Makefile jemboss/org/emboss/jemboss/editor/Makefile jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile"
 
 cat >confcache <<\_ACEOF
 # This file is a shell script that caches the results of configure
@@ -16076,12 +16276,9 @@ do
   case $ac_config_target in
     "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
     "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;;
-    "plplot/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/Makefile" ;;
-    "plplot/lib/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/lib/Makefile" ;;
     "nucleus/Makefile") CONFIG_FILES="$CONFIG_FILES nucleus/Makefile" ;;
     "ajax/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/Makefile" ;;
     "ajax/expat/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/expat/Makefile" ;;
-    "ajax/zlib/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/zlib/Makefile" ;;
     "ajax/core/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/core/Makefile" ;;
     "ajax/graphics/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/graphics/Makefile" ;;
     "ajax/ensembl/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/ensembl/Makefile" ;;
diff -up EMBOSS-6.2.0/autom4te.cache/traces.0.system-plplot EMBOSS-6.2.0/autom4te.cache/traces.0
--- EMBOSS-6.2.0/autom4te.cache/traces.0.system-plplot	2010-04-07 12:06:27.507735087 -0400
+++ EMBOSS-6.2.0/autom4te.cache/traces.0	2010-04-07 12:06:47.250735085 -0400
@@ -3,9 +3,10 @@ m4trace:aclocal.m4:8902: -1- m4_include(
 m4trace:aclocal.m4:8903: -1- m4_include([m4/java.m4])
 m4trace:aclocal.m4:8904: -1- m4_include([m4/lf_x11.m4])
 m4trace:aclocal.m4:8905: -1- m4_include([m4/mysql.m4])
-m4trace:aclocal.m4:8906: -1- m4_include([m4/pngdriver.m4])
-m4trace:aclocal.m4:8907: -1- m4_include([m4/postgresql.m4])
-m4trace:aclocal.m4:8908: -1- m4_include([m4/sgi.m4])
+m4trace:aclocal.m4:8906: -1- m4_include([m4/plplot.m4])
+m4trace:aclocal.m4:8907: -1- m4_include([m4/pngdriver.m4])
+m4trace:aclocal.m4:8908: -1- m4_include([m4/postgresql.m4])
+m4trace:aclocal.m4:8909: -1- m4_include([m4/sgi.m4])
 m4trace:configure.in:8: -1- AC_INIT([ajax/core/ajmath.c])
 m4trace:configure.in:8: -1- m4_pattern_forbid([^_?A[CHUM]_])
 m4trace:configure.in:8: -1- m4_pattern_forbid([_AC_])
@@ -669,170 +670,220 @@ m4trace:configure.in:269: -1- m4_pattern
 m4trace:configure.in:269: -1- AC_SUBST([JAVA_OK])
 m4trace:configure.in:269: -1- AC_SUBST_TRACE([JAVA_OK])
 m4trace:configure.in:269: -1- m4_pattern_allow([^JAVA_OK$])
-m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLD_png])
-m4trace:configure.in:271: -1- m4_pattern_allow([^PLD_png$])
-m4trace:configure.in:271: -1- AM_CONDITIONAL([AMPNG], [true])
-m4trace:configure.in:271: -1- AC_SUBST([AMPNG_TRUE])
-m4trace:configure.in:271: -1- AC_SUBST_TRACE([AMPNG_TRUE])
-m4trace:configure.in:271: -1- m4_pattern_allow([^AMPNG_TRUE$])
-m4trace:configure.in:271: -1- AC_SUBST([AMPNG_FALSE])
-m4trace:configure.in:271: -1- AC_SUBST_TRACE([AMPNG_FALSE])
-m4trace:configure.in:271: -1- m4_pattern_allow([^AMPNG_FALSE$])
-m4trace:configure.in:271: -1- _AM_SUBST_NOTMAKE([AMPNG_TRUE])
-m4trace:configure.in:271: -1- _AM_SUBST_NOTMAKE([AMPNG_FALSE])
-m4trace:configure.in:271: -1- AM_CONDITIONAL([AMPNG], [false])
-m4trace:configure.in:271: -1- AC_SUBST([AMPNG_TRUE])
-m4trace:configure.in:271: -1- AC_SUBST_TRACE([AMPNG_TRUE])
-m4trace:configure.in:271: -1- m4_pattern_allow([^AMPNG_TRUE$])
-m4trace:configure.in:271: -1- AC_SUBST([AMPNG_FALSE])
-m4trace:configure.in:271: -1- AC_SUBST_TRACE([AMPNG_FALSE])
-m4trace:configure.in:271: -1- m4_pattern_allow([^AMPNG_FALSE$])
-m4trace:configure.in:271: -1- _AM_SUBST_NOTMAKE([AMPNG_TRUE])
-m4trace:configure.in:271: -1- _AM_SUBST_NOTMAKE([AMPNG_FALSE])
-m4trace:configure.in:275: -2- _m4_warn([obsolete], [The macro `AC_HELP_STRING' is obsolete.
+m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H])
+m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_H$])
+m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */
+@%:@undef PLPLOT_H])
+m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H])
+m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOTP_H$])
+m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */
+@%:@undef PLPLOTP_H])
+m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H])
+m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_H$])
+m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */
+@%:@undef PLPLOT_H])
+m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H])
+m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOTP_H$])
+m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */
+@%:@undef PLPLOTP_H])
+m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H])
+m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_H$])
+m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */
+@%:@undef PLPLOT_H])
+m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H])
+m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOTP_H$])
+m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */
+@%:@undef PLPLOTP_H])
+m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H])
+m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_H$])
+m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */
+@%:@undef PLPLOT_H])
+m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H])
+m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOTP_H$])
+m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */
+@%:@undef PLPLOTP_H])
+m4trace:configure.in:271: -1- AH_OUTPUT([HAVE_LIBPLPLOTD], [/* Define to 1 if you have the `plplotd\' library (-lplplotd). */
+@%:@undef HAVE_LIBPLPLOTD])
+m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([HAVE_LIBPLPLOTD])
+m4trace:configure.in:271: -1- m4_pattern_allow([^HAVE_LIBPLPLOTD$])
+m4trace:configure.in:271: -1- AH_OUTPUT([HAVE_LIBPLPLOTD], [/* Define to 1 if you have the `plplotd\' library (-lplplotd). */
+@%:@undef HAVE_LIBPLPLOTD])
+m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([HAVE_LIBPLPLOTD])
+m4trace:configure.in:271: -1- m4_pattern_allow([^HAVE_LIBPLPLOTD$])
+m4trace:configure.in:271: -1- AC_SUBST([PLPLOT_CFLAGS])
+m4trace:configure.in:271: -1- AC_SUBST_TRACE([PLPLOT_CFLAGS])
+m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_CFLAGS$])
+m4trace:configure.in:271: -1- AC_SUBST([PLPLOT_LIBS])
+m4trace:configure.in:271: -1- AC_SUBST_TRACE([PLPLOT_LIBS])
+m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_LIBS$])
+m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([HAVE_PLPLOT])
+m4trace:configure.in:271: -1- m4_pattern_allow([^HAVE_PLPLOT$])
+m4trace:configure.in:271: -1- AH_OUTPUT([HAVE_PLPLOT], [/* Define if you have the PLPlot libraries and header files. */
+@%:@undef HAVE_PLPLOT])
+m4trace:configure.in:272: -1- AC_DEFINE_TRACE_LITERAL([PLD_png])
+m4trace:configure.in:272: -1- m4_pattern_allow([^PLD_png$])
+m4trace:configure.in:272: -1- AM_CONDITIONAL([AMPNG], [true])
+m4trace:configure.in:272: -1- AC_SUBST([AMPNG_TRUE])
+m4trace:configure.in:272: -1- AC_SUBST_TRACE([AMPNG_TRUE])
+m4trace:configure.in:272: -1- m4_pattern_allow([^AMPNG_TRUE$])
+m4trace:configure.in:272: -1- AC_SUBST([AMPNG_FALSE])
+m4trace:configure.in:272: -1- AC_SUBST_TRACE([AMPNG_FALSE])
+m4trace:configure.in:272: -1- m4_pattern_allow([^AMPNG_FALSE$])
+m4trace:configure.in:272: -1- _AM_SUBST_NOTMAKE([AMPNG_TRUE])
+m4trace:configure.in:272: -1- _AM_SUBST_NOTMAKE([AMPNG_FALSE])
+m4trace:configure.in:272: -1- AM_CONDITIONAL([AMPNG], [false])
+m4trace:configure.in:272: -1- AC_SUBST([AMPNG_TRUE])
+m4trace:configure.in:272: -1- AC_SUBST_TRACE([AMPNG_TRUE])
+m4trace:configure.in:272: -1- m4_pattern_allow([^AMPNG_TRUE$])
+m4trace:configure.in:272: -1- AC_SUBST([AMPNG_FALSE])
+m4trace:configure.in:272: -1- AC_SUBST_TRACE([AMPNG_FALSE])
+m4trace:configure.in:272: -1- m4_pattern_allow([^AMPNG_FALSE$])
+m4trace:configure.in:272: -1- _AM_SUBST_NOTMAKE([AMPNG_TRUE])
+m4trace:configure.in:272: -1- _AM_SUBST_NOTMAKE([AMPNG_FALSE])
+m4trace:configure.in:276: -2- _m4_warn([obsolete], [The macro `AC_HELP_STRING' is obsolete.
 You should run autoupdate.], [../../lib/autoconf/general.m4:209: AC_HELP_STRING is expanded from...
 m4/mysql.m4:51: AX_LIB_MYSQL is expanded from...
-configure.in:275: the top level])
-m4trace:configure.in:275: -1- AC_SUBST([MYSQL_CONFIG])
-m4trace:configure.in:275: -1- AC_SUBST_TRACE([MYSQL_CONFIG])
-m4trace:configure.in:275: -1- m4_pattern_allow([^MYSQL_CONFIG$])
-m4trace:configure.in:275: -1- AC_DEFINE_TRACE_LITERAL([HAVE_MYSQL])
-m4trace:configure.in:275: -1- m4_pattern_allow([^HAVE_MYSQL$])
-m4trace:configure.in:275: -1- AH_OUTPUT([HAVE_MYSQL], [/* Define to 1 if MySQL libraries are available */
+configure.in:276: the top level])
+m4trace:configure.in:276: -1- AC_SUBST([MYSQL_CONFIG])
+m4trace:configure.in:276: -1- AC_SUBST_TRACE([MYSQL_CONFIG])
+m4trace:configure.in:276: -1- m4_pattern_allow([^MYSQL_CONFIG$])
+m4trace:configure.in:276: -1- AC_DEFINE_TRACE_LITERAL([HAVE_MYSQL])
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 You should run autoupdate.], [../../lib/autoconf/general.m4:209: AC_HELP_STRING is expanded from...
 m4/postgresql.m4:48: AX_LIB_POSTGRESQL is expanded from...
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+ajax/expat/Makefile ajax/core/Makefile
 ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile
 ajax/acd/Makefile
 emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile
@@ -878,33 +929,33 @@ jemboss/org/emboss/jemboss/editor/Makefi
 jemboss/org/emboss/jemboss/draw/Makefile
 jemboss/resources/Makefile jemboss/utils/Makefile
 Makefile])
-m4trace:configure.in:589: -1- _m4_warn([obsolete], [AC_OUTPUT should be used without arguments.
+m4trace:configure.in:590: -1- _m4_warn([obsolete], [AC_OUTPUT should be used without arguments.
 You should run autoupdate.], [])
-m4trace:configure.in:589: -1- AC_SUBST([LIB@&t@OBJS], [$ac_libobjs])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([LIB@&t@OBJS])
-m4trace:configure.in:589: -1- m4_pattern_allow([^LIB@&t@OBJS$])
-m4trace:configure.in:589: -1- AC_SUBST([LTLIBOBJS], [$ac_ltlibobjs])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([LTLIBOBJS])
-m4trace:configure.in:589: -1- m4_pattern_allow([^LTLIBOBJS$])
-m4trace:configure.in:589: -1- AM_CONDITIONAL([am__EXEEXT], [test -n "$EXEEXT"])
-m4trace:configure.in:589: -1- AC_SUBST([am__EXEEXT_TRUE])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([am__EXEEXT_TRUE])
-m4trace:configure.in:589: -1- m4_pattern_allow([^am__EXEEXT_TRUE$])
-m4trace:configure.in:589: -1- AC_SUBST([am__EXEEXT_FALSE])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([am__EXEEXT_FALSE])
-m4trace:configure.in:589: -1- m4_pattern_allow([^am__EXEEXT_FALSE$])
-m4trace:configure.in:589: -1- _AM_SUBST_NOTMAKE([am__EXEEXT_TRUE])
-m4trace:configure.in:589: -1- _AM_SUBST_NOTMAKE([am__EXEEXT_FALSE])
-m4trace:configure.in:589: -1- _m4_warn([obsolete], [AC_C_BIGENDIAN should be used with AC_CONFIG_HEADERS], [])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([top_builddir])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([top_build_prefix])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([srcdir])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([abs_srcdir])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([top_srcdir])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([abs_top_srcdir])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([builddir])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([abs_builddir])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([abs_top_builddir])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([INSTALL])
-m4trace:configure.in:589: -1- AC_SUBST_TRACE([MKDIR_P])
-m4trace:configure.in:589: -1- AC_REQUIRE_AUX_FILE([ltmain.sh])
+m4trace:configure.in:590: -1- AC_SUBST([LIB@&t@OBJS], [$ac_libobjs])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([LIB@&t@OBJS])
+m4trace:configure.in:590: -1- m4_pattern_allow([^LIB@&t@OBJS$])
+m4trace:configure.in:590: -1- AC_SUBST([LTLIBOBJS], [$ac_ltlibobjs])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([LTLIBOBJS])
+m4trace:configure.in:590: -1- m4_pattern_allow([^LTLIBOBJS$])
+m4trace:configure.in:590: -1- AM_CONDITIONAL([am__EXEEXT], [test -n "$EXEEXT"])
+m4trace:configure.in:590: -1- AC_SUBST([am__EXEEXT_TRUE])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([am__EXEEXT_TRUE])
+m4trace:configure.in:590: -1- m4_pattern_allow([^am__EXEEXT_TRUE$])
+m4trace:configure.in:590: -1- AC_SUBST([am__EXEEXT_FALSE])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([am__EXEEXT_FALSE])
+m4trace:configure.in:590: -1- m4_pattern_allow([^am__EXEEXT_FALSE$])
+m4trace:configure.in:590: -1- _AM_SUBST_NOTMAKE([am__EXEEXT_TRUE])
+m4trace:configure.in:590: -1- _AM_SUBST_NOTMAKE([am__EXEEXT_FALSE])
+m4trace:configure.in:590: -1- _m4_warn([obsolete], [AC_C_BIGENDIAN should be used with AC_CONFIG_HEADERS], [])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([top_builddir])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([top_build_prefix])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([srcdir])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([abs_srcdir])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([top_srcdir])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([abs_top_srcdir])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([builddir])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([abs_builddir])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([abs_top_builddir])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([INSTALL])
+m4trace:configure.in:590: -1- AC_SUBST_TRACE([MKDIR_P])
+m4trace:configure.in:590: -1- AC_REQUIRE_AUX_FILE([ltmain.sh])
diff -up EMBOSS-6.2.0/configure.in.system-plplot EMBOSS-6.2.0/configure.in
--- EMBOSS-6.2.0/configure.in.system-plplot	2010-04-07 12:06:27.663735436 -0400
+++ EMBOSS-6.2.0/configure.in	2010-04-07 12:06:27.775738370 -0400
@@ -268,6 +268,7 @@ AM_CONDITIONAL(AMPNG, false)
 CHECK_GENERAL
 CHECK_JAVA
 CHECK_JAVAOS
+CHECK_PLPLOT
 CHECK_PNGDRIVER
 CHECK_AUTH
 CHECK_AMD64
@@ -586,7 +587,7 @@ dnl check and set compilation flags for 
 CHECK_THREADS
 
 
-AC_OUTPUT([plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile
+AC_OUTPUT([nucleus/Makefile ajax/Makefile
 ajax/expat/Makefile ajax/core/Makefile
 ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile
 ajax/acd/Makefile
diff -up EMBOSS-6.2.0/configure.system-plplot EMBOSS-6.2.0/configure
--- EMBOSS-6.2.0/configure.system-plplot	2010-04-07 12:06:27.684735087 -0400
+++ EMBOSS-6.2.0/configure	2010-04-07 12:06:47.802609579 -0400
@@ -778,6 +778,8 @@ MYSQL_LDFLAGS
 MYSQL_CFLAGS
 MYSQL_VERSION
 MYSQL_CONFIG
+PLPLOT_LIBS
+PLPLOT_CFLAGS
 JAVA_OK
 havejavac
 AMPNG_FALSE
@@ -4604,13 +4606,13 @@ if test "${lt_cv_nm_interface+set}" = se
 else
   lt_cv_nm_interface="BSD nm"
   echo "int some_variable = 0;" > conftest.$ac_ext
-  (eval echo "\"\$as_me:4607: $ac_compile\"" >&5)
+  (eval echo "\"\$as_me:4609: $ac_compile\"" >&5)
   (eval "$ac_compile" 2>conftest.err)
   cat conftest.err >&5
-  (eval echo "\"\$as_me:4610: $NM \\\"conftest.$ac_objext\\\"\"" >&5)
+  (eval echo "\"\$as_me:4612: $NM \\\"conftest.$ac_objext\\\"\"" >&5)
   (eval "$NM \"conftest.$ac_objext\"" 2>conftest.err > conftest.out)
   cat conftest.err >&5
-  (eval echo "\"\$as_me:4613: output\"" >&5)
+  (eval echo "\"\$as_me:4615: output\"" >&5)
   cat conftest.out >&5
   if $GREP 'External.*some_variable' conftest.out > /dev/null; then
     lt_cv_nm_interface="MS dumpbin"
@@ -5816,7 +5818,7 @@ ia64-*-hpux*)
   ;;
 *-*-irix6*)
   # Find out which ABI we are using.
-  echo '#line 5819 "configure"' > conftest.$ac_ext
+  echo '#line 5821 "configure"' > conftest.$ac_ext
   if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5
   (eval $ac_compile) 2>&5
   ac_status=$?
@@ -7342,11 +7344,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:7345: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:7347: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:7349: \$? = $ac_status" >&5
+   echo "$as_me:7351: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -7681,11 +7683,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:7684: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:7686: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>conftest.err)
    ac_status=$?
    cat conftest.err >&5
-   echo "$as_me:7688: \$? = $ac_status" >&5
+   echo "$as_me:7690: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s "$ac_outfile"; then
      # The compiler can only warn and ignore the option if not recognized
      # So say no if there are warnings other than the usual output.
@@ -7786,11 +7788,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:7789: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:7791: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>out/conftest.err)
    ac_status=$?
    cat out/conftest.err >&5
-   echo "$as_me:7793: \$? = $ac_status" >&5
+   echo "$as_me:7795: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s out/conftest2.$ac_objext
    then
      # The compiler can only warn and ignore the option if not recognized
@@ -7841,11 +7843,11 @@ else
    -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
    -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
    -e 's:$: $lt_compiler_flag:'`
-   (eval echo "\"\$as_me:7844: $lt_compile\"" >&5)
+   (eval echo "\"\$as_me:7846: $lt_compile\"" >&5)
    (eval "$lt_compile" 2>out/conftest.err)
    ac_status=$?
    cat out/conftest.err >&5
-   echo "$as_me:7848: \$? = $ac_status" >&5
+   echo "$as_me:7850: \$? = $ac_status" >&5
    if (exit $ac_status) && test -s out/conftest2.$ac_objext
    then
      # The compiler can only warn and ignore the option if not recognized
@@ -10211,7 +10213,7 @@ else
   lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
   lt_status=$lt_dlunknown
   cat > conftest.$ac_ext <<_LT_EOF
-#line 10214 "configure"
+#line 10216 "configure"
 #include "confdefs.h"
 
 #if HAVE_DLFCN_H
@@ -10307,7 +10309,7 @@ else
   lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
   lt_status=$lt_dlunknown
   cat > conftest.$ac_ext <<_LT_EOF
-#line 10310 "configure"
+#line 10312 "configure"
 #include "confdefs.h"
 
 #if HAVE_DLFCN_H
@@ -13769,6 +13771,204 @@ fi
 
 
 
+
+
+
+PLPLOT_LIBS=""
+OLIBS="$LIBS"
+LIBS=""
+
+check_plplot_ok=yes
+check_plplotpkg_ok=no
+if test x = x && test x = x; then
+  { $as_echo "$as_me:${as_lineno-$LINENO}: checking for PLPlot pkg-config info" >&5
+$as_echo_n "checking for PLPlot pkg-config info... " >&6; }
+  if pkg-config --exists plplotd; then
+    { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
+$as_echo "yes" >&6; }
+    PLPLOT_CFLAGS=`pkg-config --cflags plplotd`
+    PLPLOT_LIBS=`pkg-config --libs plplotd`
+
+$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h
+
+
+$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h
+
+    check_plplotpkg_ok=yes
+  else
+    { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+  fi
+fi
+if test x$check_plplotpkg_ok = xno; then
+  if test x = x; then
+    ac_fn_c_check_header_mongrel "$LINENO" "plplot.h" "ac_cv_header_plplot_h" "$ac_includes_default"
+if test "x$ac_cv_header_plplot_h" = x""yes; then :
+  check_plplothead_ok=yes
+else
+  check_plplothead_ok=no
+fi
+
+
+    if test x$check_plplothead_ok = xyes; then
+
+$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h
+
+
+$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h
+
+    else
+      ac_fn_c_check_header_mongrel "$LINENO" "plplot/plplot.h" "ac_cv_header_plplot_plplot_h" "$ac_includes_default"
+if test "x$ac_cv_header_plplot_plplot_h" = x""yes; then :
+  check_plplothead_ok=yes
+else
+  check_plplothead_ok=no
+fi
+
+
+      if test x$check_plplothead_ok = xyes; then
+
+$as_echo "#define PLPLOT_H \"plplot/plplot.h\"" >>confdefs.h
+
+
+$as_echo "#define PLPLOTP_H \"plplot/plplotP.h\"" >>confdefs.h
+
+      else
+        check_plplot_ok=no
+      fi
+    fi
+  else
+    ac_fn_c_check_header_mongrel "$LINENO" "/plplot.h" "ac_cv_header__plplot_h" "$ac_includes_default"
+if test "x$ac_cv_header__plplot_h" = x""yes; then :
+  check_plplothead_ok=yes
+else
+  check_plplothead_ok=no
+fi
+
+
+    if test x$check_plplothead_ok = xyes; then
+
+$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h
+
+
+$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h
+
+     PLPLOT_CFLAGS="-I"
+    else
+      check_plplot_ok=no
+    fi
+  fi
+  if test x = x; then
+    { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5
+$as_echo_n "checking for c_plinit in -lplplotd... " >&6; }
+if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then :
+  $as_echo_n "(cached) " >&6
+else
+  ac_check_lib_save_LIBS=$LIBS
+LIBS="-lplplotd  $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+
+/* Override any GCC internal prototype to avoid an error.
+   Use char because int might match the return type of a GCC
+   builtin and then its argument prototype would still apply.  */
+#ifdef __cplusplus
+extern "C"
+#endif
+char c_plinit ();
+int
+main ()
+{
+return c_plinit ();
+  ;
+  return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+  ac_cv_lib_plplotd_c_plinit=yes
+else
+  ac_cv_lib_plplotd_c_plinit=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+    conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5
+$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; }
+if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then :
+  cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBPLPLOTD 1
+_ACEOF
+
+  LIBS="-lplplotd $LIBS"
+
+else
+  check_plplot_ok=no
+fi
+
+    PLPLOT_LIBS="-lplplotd"
+  else
+    { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5
+$as_echo_n "checking for c_plinit in -lplplotd... " >&6; }
+if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then :
+  $as_echo_n "(cached) " >&6
+else
+  ac_check_lib_save_LIBS=$LIBS
+LIBS="-lplplotd -L $LIBS"
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h.  */
+
+/* Override any GCC internal prototype to avoid an error.
+   Use char because int might match the return type of a GCC
+   builtin and then its argument prototype would still apply.  */
+#ifdef __cplusplus
+extern "C"
+#endif
+char c_plinit ();
+int
+main ()
+{
+return c_plinit ();
+  ;
+  return 0;
+}
+_ACEOF
+if ac_fn_c_try_link "$LINENO"; then :
+  ac_cv_lib_plplotd_c_plinit=yes
+else
+  ac_cv_lib_plplotd_c_plinit=no
+fi
+rm -f core conftest.err conftest.$ac_objext \
+    conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5
+$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; }
+if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then :
+  cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBPLPLOTD 1
+_ACEOF
+
+  LIBS="-lplplotd $LIBS"
+
+else
+  check_plplot_ok=no
+fi
+
+    PLPLOT_LIBS="-L -lplplotd"
+  fi
+fi
+
+LIBS="$OLIBS"
+if test x$check_plplot_ok = xyes; then
+
+
+
+$as_echo "#define HAVE_PLPLOT 1" >>confdefs.h
+
+fi
+
+
 #
 # Handle user hints
 #
@@ -15042,7 +15242,7 @@ fi
 
 
 
-ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/api/Makefile jemboss/api/org/Makefile jemboss/api/org/emboss/Makefile jemboss/api/org/emboss/jemboss/Makefile jemboss/api/org/emboss/jemboss/gui/Makefile jemboss/api/org/emboss/jemboss/gui/filetree/Makefile jemboss/api/org/emboss/jemboss/gui/form/Makefile jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/api/org/emboss/jemboss/gui/startup/Makefile jemboss/api/org/emboss/jemboss/parser/Makefile jemboss/api/org/emboss/jemboss/parser/acd/Makefile jemboss/api/org/emboss/jemboss/programs/Makefile jemboss/api/org/emboss/jemboss/soap/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/org/Makefile jemboss/org/emboss/Makefile jemboss/org/emboss/jemboss/Makefile jemboss/org/emboss/jemboss/graphics/Makefile jemboss/org/emboss/jemboss/gui/Makefile jemboss/org/emboss/jemboss/gui/filetree/Makefile jemboss/org/emboss/jemboss/gui/form/Makefile jemboss/org/emboss/jemboss/gui/startup/Makefile jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/org/emboss/jemboss/parser/Makefile jemboss/org/emboss/jemboss/parser/acd/Makefile jemboss/org/emboss/jemboss/programs/Makefile jemboss/org/emboss/jemboss/server/Makefile jemboss/org/emboss/jemboss/soap/Makefile jemboss/org/emboss/jemboss/editor/Makefile jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile"
+ac_config_files="$ac_config_files nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/api/Makefile jemboss/api/org/Makefile jemboss/api/org/emboss/Makefile jemboss/api/org/emboss/jemboss/Makefile jemboss/api/org/emboss/jemboss/gui/Makefile jemboss/api/org/emboss/jemboss/gui/filetree/Makefile jemboss/api/org/emboss/jemboss/gui/form/Makefile jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/api/org/emboss/jemboss/gui/startup/Makefile jemboss/api/org/emboss/jemboss/parser/Makefile jemboss/api/org/emboss/jemboss/parser/acd/Makefile jemboss/api/org/emboss/jemboss/programs/Makefile jemboss/api/org/emboss/jemboss/soap/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/org/Makefile jemboss/org/emboss/Makefile jemboss/org/emboss/jemboss/Makefile jemboss/org/emboss/jemboss/graphics/Makefile jemboss/org/emboss/jemboss/gui/Makefile jemboss/org/emboss/jemboss/gui/filetree/Makefile jemboss/org/emboss/jemboss/gui/form/Makefile jemboss/org/emboss/jemboss/gui/startup/Makefile jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/org/emboss/jemboss/parser/Makefile jemboss/org/emboss/jemboss/parser/acd/Makefile jemboss/org/emboss/jemboss/programs/Makefile jemboss/org/emboss/jemboss/server/Makefile jemboss/org/emboss/jemboss/soap/Makefile jemboss/org/emboss/jemboss/editor/Makefile jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile"
 
 cat >confcache <<\_ACEOF
 # This file is a shell script that caches the results of configure
@@ -16076,8 +16276,6 @@ do
   case $ac_config_target in
     "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
     "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;;
-    "plplot/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/Makefile" ;;
-    "plplot/lib/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/lib/Makefile" ;;
     "nucleus/Makefile") CONFIG_FILES="$CONFIG_FILES nucleus/Makefile" ;;
     "ajax/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/Makefile" ;;
     "ajax/expat/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/expat/Makefile" ;;
diff -up EMBOSS-6.2.0/doc/Makefile.in.system-plplot EMBOSS-6.2.0/doc/Makefile.in
--- EMBOSS-6.2.0/doc/Makefile.in.system-plplot	2010-04-07 12:06:27.537735716 -0400
+++ EMBOSS-6.2.0/doc/Makefile.in	2010-04-07 12:10:21.938610697 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/doc/manuals/Makefile.in.system-plplot EMBOSS-6.2.0/doc/manuals/Makefile.in
--- EMBOSS-6.2.0/doc/manuals/Makefile.in.system-plplot	2010-04-07 12:06:27.538735227 -0400
+++ EMBOSS-6.2.0/doc/manuals/Makefile.in	2010-04-07 12:10:22.065610628 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/doc/programs/html/Makefile.in.system-plplot EMBOSS-6.2.0/doc/programs/html/Makefile.in
--- EMBOSS-6.2.0/doc/programs/html/Makefile.in.system-plplot	2010-04-07 12:06:27.539736624 -0400
+++ EMBOSS-6.2.0/doc/programs/html/Makefile.in	2010-04-07 12:10:22.270610977 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/doc/programs/Makefile.in.system-plplot EMBOSS-6.2.0/doc/programs/Makefile.in
--- EMBOSS-6.2.0/doc/programs/Makefile.in.system-plplot	2010-04-07 12:06:27.541735157 -0400
+++ EMBOSS-6.2.0/doc/programs/Makefile.in	2010-04-07 12:10:22.141610628 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/doc/programs/text/Makefile.in.system-plplot EMBOSS-6.2.0/doc/programs/text/Makefile.in
--- EMBOSS-6.2.0/doc/programs/text/Makefile.in.system-plplot	2010-04-07 12:06:27.542739347 -0400
+++ EMBOSS-6.2.0/doc/programs/text/Makefile.in	2010-04-07 12:10:22.357610907 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/doc/tutorials/Makefile.in.system-plplot EMBOSS-6.2.0/doc/tutorials/Makefile.in
--- EMBOSS-6.2.0/doc/tutorials/Makefile.in.system-plplot	2010-04-07 12:06:27.543734528 -0400
+++ EMBOSS-6.2.0/doc/tutorials/Makefile.in	2010-04-07 12:10:22.425609720 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/acd/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/acd/Makefile.in
--- EMBOSS-6.2.0/emboss/acd/Makefile.in.system-plplot	2010-04-07 12:06:27.545735157 -0400
+++ EMBOSS-6.2.0/emboss/acd/Makefile.in	2010-04-07 12:10:23.426734597 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -142,6 +143,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/AAINDEX/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/AAINDEX/Makefile.in
--- EMBOSS-6.2.0/emboss/data/AAINDEX/Makefile.in.system-plplot	2010-04-07 12:06:27.547735366 -0400
+++ EMBOSS-6.2.0/emboss/data/AAINDEX/Makefile.in	2010-04-07 12:10:23.497735575 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/CODONS/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/CODONS/Makefile.in
--- EMBOSS-6.2.0/emboss/data/CODONS/Makefile.in.system-plplot	2010-04-07 12:06:27.548737532 -0400
+++ EMBOSS-6.2.0/emboss/data/CODONS/Makefile.in	2010-04-07 12:10:23.575735575 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/JASPAR_CNE/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_CNE/Makefile.in
--- EMBOSS-6.2.0/emboss/data/JASPAR_CNE/Makefile.in.system-plplot	2010-04-07 12:06:27.549737741 -0400
+++ EMBOSS-6.2.0/emboss/data/JASPAR_CNE/Makefile.in	2010-04-07 12:10:23.645735436 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/JASPAR_CORE/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_CORE/Makefile.in
--- EMBOSS-6.2.0/emboss/data/JASPAR_CORE/Makefile.in.system-plplot	2010-04-07 12:06:27.551735297 -0400
+++ EMBOSS-6.2.0/emboss/data/JASPAR_CORE/Makefile.in	2010-04-07 12:10:23.747735505 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/JASPAR_FAM/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_FAM/Makefile.in
--- EMBOSS-6.2.0/emboss/data/JASPAR_FAM/Makefile.in.system-plplot	2010-04-07 12:06:27.552735227 -0400
+++ EMBOSS-6.2.0/emboss/data/JASPAR_FAM/Makefile.in	2010-04-07 12:10:23.819735436 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/JASPAR_PHYLOFACTS/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_PHYLOFACTS/Makefile.in
--- EMBOSS-6.2.0/emboss/data/JASPAR_PHYLOFACTS/Makefile.in.system-plplot	2010-04-07 12:06:27.554735297 -0400
+++ EMBOSS-6.2.0/emboss/data/JASPAR_PHYLOFACTS/Makefile.in	2010-04-07 12:10:23.902735785 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/JASPAR_POLII/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_POLII/Makefile.in
--- EMBOSS-6.2.0/emboss/data/JASPAR_POLII/Makefile.in.system-plplot	2010-04-07 12:06:27.555735227 -0400
+++ EMBOSS-6.2.0/emboss/data/JASPAR_POLII/Makefile.in	2010-04-07 12:10:24.040735645 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/JASPAR_SPLICE/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_SPLICE/Makefile.in
--- EMBOSS-6.2.0/emboss/data/JASPAR_SPLICE/Makefile.in.system-plplot	2010-04-07 12:06:27.556737811 -0400
+++ EMBOSS-6.2.0/emboss/data/JASPAR_SPLICE/Makefile.in	2010-04-07 12:10:24.114735226 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/Makefile.in
--- EMBOSS-6.2.0/emboss/data/Makefile.in.system-plplot	2010-04-07 12:06:27.558735366 -0400
+++ EMBOSS-6.2.0/emboss/data/Makefile.in	2010-04-07 12:10:24.203736064 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/PRINTS/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/PRINTS/Makefile.in
--- EMBOSS-6.2.0/emboss/data/PRINTS/Makefile.in.system-plplot	2010-04-07 12:06:27.559737392 -0400
+++ EMBOSS-6.2.0/emboss/data/PRINTS/Makefile.in	2010-04-07 12:10:24.300735715 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/PROSITE/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/PROSITE/Makefile.in
--- EMBOSS-6.2.0/emboss/data/PROSITE/Makefile.in.system-plplot	2010-04-07 12:06:27.561735716 -0400
+++ EMBOSS-6.2.0/emboss/data/PROSITE/Makefile.in	2010-04-07 12:10:24.383735575 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/data/REBASE/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/REBASE/Makefile.in
--- EMBOSS-6.2.0/emboss/data/REBASE/Makefile.in.system-plplot	2010-04-07 12:06:27.562735087 -0400
+++ EMBOSS-6.2.0/emboss/data/REBASE/Makefile.in	2010-04-07 12:10:24.487735366 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/emboss/Makefile.am.system-plplot EMBOSS-6.2.0/emboss/Makefile.am
--- EMBOSS-6.2.0/emboss/Makefile.am.system-plplot	2010-04-07 12:06:27.685734808 -0400
+++ EMBOSS-6.2.0/emboss/Makefile.am	2010-04-07 12:06:27.809739068 -0400
@@ -80,7 +80,7 @@ INCLUDES = -I$(top_srcdir)/nucleus \
 	-I$(top_srcdir)/ajax/expat \
 	-I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \
 	-I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \
-	-I$(top_srcdir)/ajax/acd -I$(top_srcdir)/plplot
+	-I$(top_srcdir)/ajax/acd $(PLPLOT_CFLAGS)
 
 
 aaindexextract_SOURCES = aaindexextract.c
@@ -309,7 +309,7 @@ LDADD = ../nucleus/libnucleus.la ../ajax
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
 	../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la \
+	$(PLPLOT_LIBS) \
 	$(XLIB)
 
 pkgdata_DATA = emboss.default.template
diff -up EMBOSS-6.2.0/emboss/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/Makefile.in
--- EMBOSS-6.2.0/emboss/Makefile.in.system-plplot	2010-04-07 12:06:27.700735157 -0400
+++ EMBOSS-6.2.0/emboss/Makefile.in	2010-04-07 12:10:23.333735086 -0400
@@ -114,8 +114,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -131,14 +132,14 @@ aaindexextract_DEPENDENCIES = ../nucleus
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_abiview_OBJECTS = abiview.$(OBJEXT)
 abiview_OBJECTS = $(am_abiview_OBJECTS)
 abiview_LDADD = $(LDADD)
 abiview_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_acdc_OBJECTS = acdc.$(OBJEXT)
 acdc_OBJECTS = $(am_acdc_OBJECTS)
@@ -146,7 +147,7 @@ acdc_LDADD = $(LDADD)
 acdc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_acdlog_OBJECTS = acdlog.$(OBJEXT)
 acdlog_OBJECTS = $(am_acdlog_OBJECTS)
@@ -154,7 +155,7 @@ acdlog_LDADD = $(LDADD)
 acdlog_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_acdpretty_OBJECTS = acdpretty.$(OBJEXT)
 acdpretty_OBJECTS = $(am_acdpretty_OBJECTS)
@@ -163,7 +164,7 @@ acdpretty_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_acdrelations_OBJECTS = acdrelations.$(OBJEXT)
 acdrelations_OBJECTS = $(am_acdrelations_OBJECTS)
 acdrelations_LDADD = $(LDADD)
@@ -171,14 +172,14 @@ acdrelations_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_acdtable_OBJECTS = acdtable.$(OBJEXT)
 acdtable_OBJECTS = $(am_acdtable_OBJECTS)
 acdtable_LDADD = $(LDADD)
 acdtable_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_acdtrace_OBJECTS = acdtrace.$(OBJEXT)
 acdtrace_OBJECTS = $(am_acdtrace_OBJECTS)
@@ -186,7 +187,7 @@ acdtrace_LDADD = $(LDADD)
 acdtrace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_acdvalid_OBJECTS = acdvalid.$(OBJEXT)
 acdvalid_OBJECTS = $(am_acdvalid_OBJECTS)
@@ -194,7 +195,7 @@ acdvalid_LDADD = $(LDADD)
 acdvalid_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_acdxsd_OBJECTS = acdxsd.$(OBJEXT)
 acdxsd_OBJECTS = $(am_acdxsd_OBJECTS)
@@ -202,7 +203,7 @@ acdxsd_LDADD = $(LDADD)
 acdxsd_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_ajtest_OBJECTS = ajtest.$(OBJEXT)
 ajtest_OBJECTS = $(am_ajtest_OBJECTS)
@@ -210,7 +211,7 @@ ajtest_LDADD = $(LDADD)
 ajtest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_aligncopy_OBJECTS = aligncopy.$(OBJEXT)
 aligncopy_OBJECTS = $(am_aligncopy_OBJECTS)
@@ -219,7 +220,7 @@ aligncopy_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_aligncopypair_OBJECTS = aligncopypair.$(OBJEXT)
 aligncopypair_OBJECTS = $(am_aligncopypair_OBJECTS)
 aligncopypair_LDADD = $(LDADD)
@@ -227,7 +228,7 @@ aligncopypair_DEPENDENCIES = ../nucleus/
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_antigenic_OBJECTS = antigenic.$(OBJEXT)
 antigenic_OBJECTS = $(am_antigenic_OBJECTS)
 antigenic_LDADD = $(LDADD)
@@ -235,7 +236,7 @@ antigenic_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_backtranambig_OBJECTS = backtranambig.$(OBJEXT)
 backtranambig_OBJECTS = $(am_backtranambig_OBJECTS)
 backtranambig_LDADD = $(LDADD)
@@ -243,7 +244,7 @@ backtranambig_DEPENDENCIES = ../nucleus/
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_backtranseq_OBJECTS = backtranseq.$(OBJEXT)
 backtranseq_OBJECTS = $(am_backtranseq_OBJECTS)
 backtranseq_LDADD = $(LDADD)
@@ -251,14 +252,14 @@ backtranseq_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_banana_OBJECTS = banana.$(OBJEXT)
 banana_OBJECTS = $(am_banana_OBJECTS)
 banana_LDADD = $(LDADD)
 banana_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_biosed_OBJECTS = biosed.$(OBJEXT)
 biosed_OBJECTS = $(am_biosed_OBJECTS)
@@ -266,7 +267,7 @@ biosed_LDADD = $(LDADD)
 biosed_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_btwisted_OBJECTS = btwisted.$(OBJEXT)
 btwisted_OBJECTS = $(am_btwisted_OBJECTS)
@@ -274,7 +275,7 @@ btwisted_LDADD = $(LDADD)
 btwisted_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_cai_OBJECTS = cai.$(OBJEXT)
 cai_OBJECTS = $(am_cai_OBJECTS)
@@ -282,7 +283,7 @@ cai_LDADD = $(LDADD)
 cai_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_chaos_OBJECTS = chaos.$(OBJEXT)
 chaos_OBJECTS = $(am_chaos_OBJECTS)
@@ -290,7 +291,7 @@ chaos_LDADD = $(LDADD)
 chaos_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_charge_OBJECTS = charge.$(OBJEXT)
 charge_OBJECTS = $(am_charge_OBJECTS)
@@ -298,7 +299,7 @@ charge_LDADD = $(LDADD)
 charge_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_checktrans_OBJECTS = checktrans.$(OBJEXT)
 checktrans_OBJECTS = $(am_checktrans_OBJECTS)
@@ -307,14 +308,14 @@ checktrans_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_chips_OBJECTS = chips.$(OBJEXT)
 chips_OBJECTS = $(am_chips_OBJECTS)
 chips_LDADD = $(LDADD)
 chips_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_cirdna_OBJECTS = cirdna.$(OBJEXT)
 cirdna_OBJECTS = $(am_cirdna_OBJECTS)
@@ -322,7 +323,7 @@ cirdna_LDADD = $(LDADD)
 cirdna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_codcmp_OBJECTS = codcmp.$(OBJEXT)
 codcmp_OBJECTS = $(am_codcmp_OBJECTS)
@@ -330,7 +331,7 @@ codcmp_LDADD = $(LDADD)
 codcmp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 codcopy_SOURCES = codcopy.c
 codcopy_OBJECTS = codcopy.$(OBJEXT)
@@ -338,7 +339,7 @@ codcopy_LDADD = $(LDADD)
 codcopy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_coderet_OBJECTS = coderet.$(OBJEXT)
 coderet_OBJECTS = $(am_coderet_OBJECTS)
@@ -346,7 +347,7 @@ coderet_LDADD = $(LDADD)
 coderet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_complex_OBJECTS = complex.$(OBJEXT)
 complex_OBJECTS = $(am_complex_OBJECTS)
@@ -354,7 +355,7 @@ complex_LDADD = $(LDADD)
 complex_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_compseq_OBJECTS = compseq.$(OBJEXT)
 compseq_OBJECTS = $(am_compseq_OBJECTS)
@@ -362,7 +363,7 @@ compseq_LDADD = $(LDADD)
 compseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_cons_OBJECTS = cons.$(OBJEXT)
 cons_OBJECTS = $(am_cons_OBJECTS)
@@ -370,7 +371,7 @@ cons_LDADD = $(LDADD)
 cons_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_consambig_OBJECTS = consambig.$(OBJEXT)
 consambig_OBJECTS = $(am_consambig_OBJECTS)
@@ -379,7 +380,7 @@ consambig_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_corbatest_OBJECTS = corbatest.$(OBJEXT)
 corbatest_OBJECTS = $(am_corbatest_OBJECTS)
 corbatest_LDADD = $(LDADD)
@@ -387,14 +388,14 @@ corbatest_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_cpgplot_OBJECTS = cpgplot.$(OBJEXT)
 cpgplot_OBJECTS = $(am_cpgplot_OBJECTS)
 cpgplot_LDADD = $(LDADD)
 cpgplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_cpgreport_OBJECTS = cpgreport.$(OBJEXT)
 cpgreport_OBJECTS = $(am_cpgreport_OBJECTS)
@@ -403,14 +404,14 @@ cpgreport_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_cusp_OBJECTS = cusp.$(OBJEXT)
 cusp_OBJECTS = $(am_cusp_OBJECTS)
 cusp_LDADD = $(LDADD)
 cusp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_cutgextract_OBJECTS = cutgextract.$(OBJEXT)
 cutgextract_OBJECTS = $(am_cutgextract_OBJECTS)
@@ -419,14 +420,14 @@ cutgextract_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_cutseq_OBJECTS = cutseq.$(OBJEXT)
 cutseq_OBJECTS = $(am_cutseq_OBJECTS)
 cutseq_LDADD = $(LDADD)
 cutseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_dan_OBJECTS = dan.$(OBJEXT)
 dan_OBJECTS = $(am_dan_OBJECTS)
@@ -434,7 +435,7 @@ dan_LDADD = $(LDADD)
 dan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_dbiblast_OBJECTS = dbiblast.$(OBJEXT)
 dbiblast_OBJECTS = $(am_dbiblast_OBJECTS)
@@ -442,7 +443,7 @@ dbiblast_LDADD = $(LDADD)
 dbiblast_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_dbifasta_OBJECTS = dbifasta.$(OBJEXT)
 dbifasta_OBJECTS = $(am_dbifasta_OBJECTS)
@@ -450,7 +451,7 @@ dbifasta_LDADD = $(LDADD)
 dbifasta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_dbiflat_OBJECTS = dbiflat.$(OBJEXT)
 dbiflat_OBJECTS = $(am_dbiflat_OBJECTS)
@@ -458,7 +459,7 @@ dbiflat_LDADD = $(LDADD)
 dbiflat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_dbigcg_OBJECTS = dbigcg.$(OBJEXT)
 dbigcg_OBJECTS = $(am_dbigcg_OBJECTS)
@@ -466,7 +467,7 @@ dbigcg_LDADD = $(LDADD)
 dbigcg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_dbxfasta_OBJECTS = dbxfasta.$(OBJEXT)
 dbxfasta_OBJECTS = $(am_dbxfasta_OBJECTS)
@@ -474,7 +475,7 @@ dbxfasta_LDADD = $(LDADD)
 dbxfasta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_dbxflat_OBJECTS = dbxflat.$(OBJEXT)
 dbxflat_OBJECTS = $(am_dbxflat_OBJECTS)
@@ -482,7 +483,7 @@ dbxflat_LDADD = $(LDADD)
 dbxflat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_dbxgcg_OBJECTS = dbxgcg.$(OBJEXT)
 dbxgcg_OBJECTS = $(am_dbxgcg_OBJECTS)
@@ -490,7 +491,7 @@ dbxgcg_LDADD = $(LDADD)
 dbxgcg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_degapseq_OBJECTS = degapseq.$(OBJEXT)
 degapseq_OBJECTS = $(am_degapseq_OBJECTS)
@@ -498,7 +499,7 @@ degapseq_LDADD = $(LDADD)
 degapseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_density_OBJECTS = density.$(OBJEXT)
 density_OBJECTS = $(am_density_OBJECTS)
@@ -506,7 +507,7 @@ density_LDADD = $(LDADD)
 density_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_descseq_OBJECTS = descseq.$(OBJEXT)
 descseq_OBJECTS = $(am_descseq_OBJECTS)
@@ -514,7 +515,7 @@ descseq_LDADD = $(LDADD)
 descseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_diffseq_OBJECTS = diffseq.$(OBJEXT)
 diffseq_OBJECTS = $(am_diffseq_OBJECTS)
@@ -522,7 +523,7 @@ diffseq_LDADD = $(LDADD)
 diffseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_digest_OBJECTS = digest.$(OBJEXT)
 digest_OBJECTS = $(am_digest_OBJECTS)
@@ -530,7 +531,7 @@ digest_LDADD = $(LDADD)
 digest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_distmat_OBJECTS = distmat.$(OBJEXT)
 distmat_OBJECTS = $(am_distmat_OBJECTS)
@@ -538,7 +539,7 @@ distmat_LDADD = $(LDADD)
 distmat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_dotmatcher_OBJECTS = dotmatcher.$(OBJEXT)
 dotmatcher_OBJECTS = $(am_dotmatcher_OBJECTS)
@@ -547,14 +548,14 @@ dotmatcher_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_dotpath_OBJECTS = dotpath.$(OBJEXT)
 dotpath_OBJECTS = $(am_dotpath_OBJECTS)
 dotpath_LDADD = $(LDADD)
 dotpath_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_dottup_OBJECTS = dottup.$(OBJEXT)
 dottup_OBJECTS = $(am_dottup_OBJECTS)
@@ -562,7 +563,7 @@ dottup_LDADD = $(LDADD)
 dottup_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_dreg_OBJECTS = dreg.$(OBJEXT)
 dreg_OBJECTS = $(am_dreg_OBJECTS)
@@ -570,7 +571,7 @@ dreg_LDADD = $(LDADD)
 dreg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_edamclean_OBJECTS = edamclean.$(OBJEXT)
 edamclean_OBJECTS = $(am_edamclean_OBJECTS)
@@ -579,14 +580,14 @@ edamclean_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_edialign_OBJECTS = edialign.$(OBJEXT)
 edialign_OBJECTS = $(am_edialign_OBJECTS)
 edialign_LDADD = $(LDADD)
 edialign_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_einverted_OBJECTS = einverted.$(OBJEXT)
 einverted_OBJECTS = $(am_einverted_OBJECTS)
@@ -595,7 +596,7 @@ einverted_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_embossdata_OBJECTS = embossdata.$(OBJEXT)
 embossdata_OBJECTS = $(am_embossdata_OBJECTS)
 embossdata_LDADD = $(LDADD)
@@ -603,7 +604,7 @@ embossdata_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_embossversion_OBJECTS = embossversion.$(OBJEXT)
 embossversion_OBJECTS = $(am_embossversion_OBJECTS)
 embossversion_LDADD = $(LDADD)
@@ -611,14 +612,14 @@ embossversion_DEPENDENCIES = ../nucleus/
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_emma_OBJECTS = emma.$(OBJEXT)
 emma_OBJECTS = $(am_emma_OBJECTS)
 emma_LDADD = $(LDADD)
 emma_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_emowse_OBJECTS = emowse.$(OBJEXT)
 emowse_OBJECTS = $(am_emowse_OBJECTS)
@@ -626,7 +627,7 @@ emowse_LDADD = $(LDADD)
 emowse_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_ensembltest_OBJECTS = ensembltest.$(OBJEXT)
 ensembltest_OBJECTS = $(am_ensembltest_OBJECTS)
@@ -635,14 +636,14 @@ ensembltest_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_entrails_OBJECTS = entrails.$(OBJEXT)
 entrails_OBJECTS = $(am_entrails_OBJECTS)
 entrails_LDADD = $(LDADD)
 entrails_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_entrailsbook_OBJECTS = entrailsbook.$(OBJEXT)
 entrailsbook_OBJECTS = $(am_entrailsbook_OBJECTS)
@@ -651,7 +652,7 @@ entrailsbook_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_entrailshtml_OBJECTS = entrailshtml.$(OBJEXT)
 entrailshtml_OBJECTS = $(am_entrailshtml_OBJECTS)
 entrailshtml_LDADD = $(LDADD)
@@ -659,7 +660,7 @@ entrailshtml_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_entrailswiki_OBJECTS = entrailswiki.$(OBJEXT)
 entrailswiki_OBJECTS = $(am_entrailswiki_OBJECTS)
 entrailswiki_LDADD = $(LDADD)
@@ -667,14 +668,14 @@ entrailswiki_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_entret_OBJECTS = entret.$(OBJEXT)
 entret_OBJECTS = $(am_entret_OBJECTS)
 entret_LDADD = $(LDADD)
 entret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_epestfind_OBJECTS = epestfind.$(OBJEXT)
 epestfind_OBJECTS = $(am_epestfind_OBJECTS)
@@ -683,14 +684,14 @@ epestfind_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_eprimer3_OBJECTS = eprimer3.$(OBJEXT)
 eprimer3_OBJECTS = $(am_eprimer3_OBJECTS)
 eprimer3_LDADD = $(LDADD)
 eprimer3_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_equicktandem_OBJECTS = equicktandem.$(OBJEXT)
 equicktandem_OBJECTS = $(am_equicktandem_OBJECTS)
@@ -699,7 +700,7 @@ equicktandem_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_est2genome_OBJECTS = est2genome.$(OBJEXT)
 est2genome_OBJECTS = $(am_est2genome_OBJECTS)
 est2genome_LDADD = $(LDADD)
@@ -707,14 +708,14 @@ est2genome_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_etandem_OBJECTS = etandem.$(OBJEXT)
 etandem_OBJECTS = $(am_etandem_OBJECTS)
 etandem_LDADD = $(LDADD)
 etandem_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_extractalign_OBJECTS = extractalign.$(OBJEXT)
 extractalign_OBJECTS = $(am_extractalign_OBJECTS)
@@ -723,7 +724,7 @@ extractalign_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_extractfeat_OBJECTS = extractfeat.$(OBJEXT)
 extractfeat_OBJECTS = $(am_extractfeat_OBJECTS)
 extractfeat_LDADD = $(LDADD)
@@ -731,7 +732,7 @@ extractfeat_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_extractseq_OBJECTS = extractseq.$(OBJEXT)
 extractseq_OBJECTS = $(am_extractseq_OBJECTS)
 extractseq_LDADD = $(LDADD)
@@ -739,14 +740,14 @@ extractseq_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_featcopy_OBJECTS = featcopy.$(OBJEXT)
 featcopy_OBJECTS = $(am_featcopy_OBJECTS)
 featcopy_LDADD = $(LDADD)
 featcopy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_featreport_OBJECTS = featreport.$(OBJEXT)
 featreport_OBJECTS = $(am_featreport_OBJECTS)
@@ -755,14 +756,14 @@ featreport_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_findkm_OBJECTS = findkm.$(OBJEXT)
 findkm_OBJECTS = $(am_findkm_OBJECTS)
 findkm_LDADD = $(LDADD)
 findkm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_freak_OBJECTS = freak.$(OBJEXT)
 freak_OBJECTS = $(am_freak_OBJECTS)
@@ -770,7 +771,7 @@ freak_LDADD = $(LDADD)
 freak_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_fuzznuc_OBJECTS = fuzznuc.$(OBJEXT)
 fuzznuc_OBJECTS = $(am_fuzznuc_OBJECTS)
@@ -778,7 +779,7 @@ fuzznuc_LDADD = $(LDADD)
 fuzznuc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_fuzzpro_OBJECTS = fuzzpro.$(OBJEXT)
 fuzzpro_OBJECTS = $(am_fuzzpro_OBJECTS)
@@ -786,7 +787,7 @@ fuzzpro_LDADD = $(LDADD)
 fuzzpro_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_fuzztran_OBJECTS = fuzztran.$(OBJEXT)
 fuzztran_OBJECTS = $(am_fuzztran_OBJECTS)
@@ -794,7 +795,7 @@ fuzztran_LDADD = $(LDADD)
 fuzztran_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_garnier_OBJECTS = garnier.$(OBJEXT)
 garnier_OBJECTS = $(am_garnier_OBJECTS)
@@ -802,7 +803,7 @@ garnier_LDADD = $(LDADD)
 garnier_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_geecee_OBJECTS = geecee.$(OBJEXT)
 geecee_OBJECTS = $(am_geecee_OBJECTS)
@@ -810,7 +811,7 @@ geecee_LDADD = $(LDADD)
 geecee_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_getorf_OBJECTS = getorf.$(OBJEXT)
 getorf_OBJECTS = $(am_getorf_OBJECTS)
@@ -818,7 +819,7 @@ getorf_LDADD = $(LDADD)
 getorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_helixturnhelix_OBJECTS = helixturnhelix.$(OBJEXT)
 helixturnhelix_OBJECTS = $(am_helixturnhelix_OBJECTS)
@@ -827,7 +828,7 @@ helixturnhelix_DEPENDENCIES = ../nucleus
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_histogramtest_OBJECTS = histogramtest.$(OBJEXT)
 histogramtest_OBJECTS = $(am_histogramtest_OBJECTS)
 histogramtest_LDADD = $(LDADD)
@@ -835,14 +836,14 @@ histogramtest_DEPENDENCIES = ../nucleus/
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_hmoment_OBJECTS = hmoment.$(OBJEXT)
 hmoment_OBJECTS = $(am_hmoment_OBJECTS)
 hmoment_LDADD = $(LDADD)
 hmoment_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_iep_OBJECTS = iep.$(OBJEXT)
 iep_OBJECTS = $(am_iep_OBJECTS)
@@ -850,7 +851,7 @@ iep_LDADD = $(LDADD)
 iep_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_infoalign_OBJECTS = infoalign.$(OBJEXT)
 infoalign_OBJECTS = $(am_infoalign_OBJECTS)
@@ -859,14 +860,14 @@ infoalign_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_infobase_OBJECTS = infobase.$(OBJEXT)
 infobase_OBJECTS = $(am_infobase_OBJECTS)
 infobase_LDADD = $(LDADD)
 infobase_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_inforesidue_OBJECTS = inforesidue.$(OBJEXT)
 inforesidue_OBJECTS = $(am_inforesidue_OBJECTS)
@@ -875,14 +876,14 @@ inforesidue_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_infoseq_OBJECTS = infoseq.$(OBJEXT)
 infoseq_OBJECTS = $(am_infoseq_OBJECTS)
 infoseq_LDADD = $(LDADD)
 infoseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_intconv_OBJECTS = intconv.$(OBJEXT)
 intconv_OBJECTS = $(am_intconv_OBJECTS)
@@ -890,7 +891,7 @@ intconv_LDADD = $(LDADD)
 intconv_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_isochore_OBJECTS = isochore.$(OBJEXT)
 isochore_OBJECTS = $(am_isochore_OBJECTS)
@@ -898,7 +899,7 @@ isochore_LDADD = $(LDADD)
 isochore_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_jaspextract_OBJECTS = jaspextract.$(OBJEXT)
 jaspextract_OBJECTS = $(am_jaspextract_OBJECTS)
@@ -907,14 +908,14 @@ jaspextract_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_jaspscan_OBJECTS = jaspscan.$(OBJEXT)
 jaspscan_OBJECTS = $(am_jaspscan_OBJECTS)
 jaspscan_LDADD = $(LDADD)
 jaspscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_jembossctl_OBJECTS = jembossctl.$(OBJEXT)
 jembossctl_OBJECTS = $(am_jembossctl_OBJECTS)
@@ -923,14 +924,14 @@ jembossctl_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_lindna_OBJECTS = lindna.$(OBJEXT)
 lindna_OBJECTS = $(am_lindna_OBJECTS)
 lindna_LDADD = $(LDADD)
 lindna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_listor_OBJECTS = listor.$(OBJEXT)
 listor_OBJECTS = $(am_listor_OBJECTS)
@@ -938,7 +939,7 @@ listor_LDADD = $(LDADD)
 listor_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 makenucseq_SOURCES = makenucseq.c
 makenucseq_OBJECTS = makenucseq.$(OBJEXT)
@@ -947,7 +948,7 @@ makenucseq_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 makeprotseq_SOURCES = makeprotseq.c
 makeprotseq_OBJECTS = makeprotseq.$(OBJEXT)
 makeprotseq_LDADD = $(LDADD)
@@ -955,14 +956,14 @@ makeprotseq_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_marscan_OBJECTS = marscan.$(OBJEXT)
 marscan_OBJECTS = $(am_marscan_OBJECTS)
 marscan_LDADD = $(LDADD)
 marscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_maskambignuc_OBJECTS = maskambignuc.$(OBJEXT)
 maskambignuc_OBJECTS = $(am_maskambignuc_OBJECTS)
@@ -971,7 +972,7 @@ maskambignuc_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_maskambigprot_OBJECTS = maskambigprot.$(OBJEXT)
 maskambigprot_OBJECTS = $(am_maskambigprot_OBJECTS)
 maskambigprot_LDADD = $(LDADD)
@@ -979,14 +980,14 @@ maskambigprot_DEPENDENCIES = ../nucleus/
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_maskfeat_OBJECTS = maskfeat.$(OBJEXT)
 maskfeat_OBJECTS = $(am_maskfeat_OBJECTS)
 maskfeat_LDADD = $(LDADD)
 maskfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_maskseq_OBJECTS = maskseq.$(OBJEXT)
 maskseq_OBJECTS = $(am_maskseq_OBJECTS)
@@ -994,7 +995,7 @@ maskseq_LDADD = $(LDADD)
 maskseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_matcher_OBJECTS = matcher.$(OBJEXT)
 matcher_OBJECTS = $(am_matcher_OBJECTS)
@@ -1002,7 +1003,7 @@ matcher_LDADD = $(LDADD)
 matcher_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_megamerger_OBJECTS = megamerger.$(OBJEXT)
 megamerger_OBJECTS = $(am_megamerger_OBJECTS)
@@ -1011,14 +1012,14 @@ megamerger_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_merger_OBJECTS = merger.$(OBJEXT)
 merger_OBJECTS = $(am_merger_OBJECTS)
 merger_LDADD = $(LDADD)
 merger_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_msbar_OBJECTS = msbar.$(OBJEXT)
 msbar_OBJECTS = $(am_msbar_OBJECTS)
@@ -1026,7 +1027,7 @@ msbar_LDADD = $(LDADD)
 msbar_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_mwcontam_OBJECTS = mwcontam.$(OBJEXT)
 mwcontam_OBJECTS = $(am_mwcontam_OBJECTS)
@@ -1034,7 +1035,7 @@ mwcontam_LDADD = $(LDADD)
 mwcontam_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_mwfilter_OBJECTS = mwfilter.$(OBJEXT)
 mwfilter_OBJECTS = $(am_mwfilter_OBJECTS)
@@ -1042,7 +1043,7 @@ mwfilter_LDADD = $(LDADD)
 mwfilter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_needle_OBJECTS = needle.$(OBJEXT)
 needle_OBJECTS = $(am_needle_OBJECTS)
@@ -1050,7 +1051,7 @@ needle_LDADD = $(LDADD)
 needle_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_needleall_OBJECTS = needleall.$(OBJEXT)
 needleall_OBJECTS = $(am_needleall_OBJECTS)
@@ -1059,14 +1060,14 @@ needleall_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_newcoils_OBJECTS = newcoils.$(OBJEXT)
 newcoils_OBJECTS = $(am_newcoils_OBJECTS)
 newcoils_LDADD = $(LDADD)
 newcoils_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_newcpgreport_OBJECTS = newcpgreport.$(OBJEXT)
 newcpgreport_OBJECTS = $(am_newcpgreport_OBJECTS)
@@ -1075,7 +1076,7 @@ newcpgreport_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_newcpgseek_OBJECTS = newcpgseek.$(OBJEXT)
 newcpgseek_OBJECTS = $(am_newcpgseek_OBJECTS)
 newcpgseek_LDADD = $(LDADD)
@@ -1083,14 +1084,14 @@ newcpgseek_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_newseq_OBJECTS = newseq.$(OBJEXT)
 newseq_OBJECTS = $(am_newseq_OBJECTS)
 newseq_LDADD = $(LDADD)
 newseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_nohtml_OBJECTS = nohtml.$(OBJEXT)
 nohtml_OBJECTS = $(am_nohtml_OBJECTS)
@@ -1098,7 +1099,7 @@ nohtml_LDADD = $(LDADD)
 nohtml_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_noreturn_OBJECTS = noreturn.$(OBJEXT)
 noreturn_OBJECTS = $(am_noreturn_OBJECTS)
@@ -1106,7 +1107,7 @@ noreturn_LDADD = $(LDADD)
 noreturn_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_nospace_OBJECTS = nospace.$(OBJEXT)
 nospace_OBJECTS = $(am_nospace_OBJECTS)
@@ -1114,7 +1115,7 @@ nospace_LDADD = $(LDADD)
 nospace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_notab_OBJECTS = notab.$(OBJEXT)
 notab_OBJECTS = $(am_notab_OBJECTS)
@@ -1122,7 +1123,7 @@ notab_LDADD = $(LDADD)
 notab_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_notseq_OBJECTS = notseq.$(OBJEXT)
 notseq_OBJECTS = $(am_notseq_OBJECTS)
@@ -1130,7 +1131,7 @@ notseq_LDADD = $(LDADD)
 notseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_nthseq_OBJECTS = nthseq.$(OBJEXT)
 nthseq_OBJECTS = $(am_nthseq_OBJECTS)
@@ -1138,7 +1139,7 @@ nthseq_LDADD = $(LDADD)
 nthseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_nthseqset_OBJECTS = nthseqset.$(OBJEXT)
 nthseqset_OBJECTS = $(am_nthseqset_OBJECTS)
@@ -1147,14 +1148,14 @@ nthseqset_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_octanol_OBJECTS = octanol.$(OBJEXT)
 octanol_OBJECTS = $(am_octanol_OBJECTS)
 octanol_LDADD = $(LDADD)
 octanol_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_oddcomp_OBJECTS = oddcomp.$(OBJEXT)
 oddcomp_OBJECTS = $(am_oddcomp_OBJECTS)
@@ -1162,7 +1163,7 @@ oddcomp_LDADD = $(LDADD)
 oddcomp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_origsplitter_OBJECTS = origsplitter.$(OBJEXT)
 origsplitter_OBJECTS = $(am_origsplitter_OBJECTS)
@@ -1171,7 +1172,7 @@ origsplitter_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_origunion_OBJECTS = origunion.$(OBJEXT)
 origunion_OBJECTS = $(am_origunion_OBJECTS)
 origunion_LDADD = $(LDADD)
@@ -1179,7 +1180,7 @@ origunion_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_palindrome_OBJECTS = palindrome.$(OBJEXT)
 palindrome_OBJECTS = $(am_palindrome_OBJECTS)
 palindrome_LDADD = $(LDADD)
@@ -1187,14 +1188,14 @@ palindrome_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_pasteseq_OBJECTS = pasteseq.$(OBJEXT)
 pasteseq_OBJECTS = $(am_pasteseq_OBJECTS)
 pasteseq_LDADD = $(LDADD)
 pasteseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_patmatdb_OBJECTS = patmatdb.$(OBJEXT)
 patmatdb_OBJECTS = $(am_patmatdb_OBJECTS)
@@ -1202,7 +1203,7 @@ patmatdb_LDADD = $(LDADD)
 patmatdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_patmatmotifs_OBJECTS = patmatmotifs.$(OBJEXT)
 patmatmotifs_OBJECTS = $(am_patmatmotifs_OBJECTS)
@@ -1211,7 +1212,7 @@ patmatmotifs_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_patmattest_OBJECTS = patmattest.$(OBJEXT)
 patmattest_OBJECTS = $(am_patmattest_OBJECTS)
 patmattest_LDADD = $(LDADD)
@@ -1219,14 +1220,14 @@ patmattest_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_pepcoil_OBJECTS = pepcoil.$(OBJEXT)
 pepcoil_OBJECTS = $(am_pepcoil_OBJECTS)
 pepcoil_LDADD = $(LDADD)
 pepcoil_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_pepinfo_OBJECTS = pepinfo.$(OBJEXT)
 pepinfo_OBJECTS = $(am_pepinfo_OBJECTS)
@@ -1234,7 +1235,7 @@ pepinfo_LDADD = $(LDADD)
 pepinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_pepnet_OBJECTS = pepnet.$(OBJEXT)
 pepnet_OBJECTS = $(am_pepnet_OBJECTS)
@@ -1242,7 +1243,7 @@ pepnet_LDADD = $(LDADD)
 pepnet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_pepstats_OBJECTS = pepstats.$(OBJEXT)
 pepstats_OBJECTS = $(am_pepstats_OBJECTS)
@@ -1250,7 +1251,7 @@ pepstats_LDADD = $(LDADD)
 pepstats_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_pepwheel_OBJECTS = pepwheel.$(OBJEXT)
 pepwheel_OBJECTS = $(am_pepwheel_OBJECTS)
@@ -1258,7 +1259,7 @@ pepwheel_LDADD = $(LDADD)
 pepwheel_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_pepwindow_OBJECTS = pepwindow.$(OBJEXT)
 pepwindow_OBJECTS = $(am_pepwindow_OBJECTS)
@@ -1267,7 +1268,7 @@ pepwindow_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_pepwindowall_OBJECTS = pepwindowall.$(OBJEXT)
 pepwindowall_OBJECTS = $(am_pepwindowall_OBJECTS)
 pepwindowall_LDADD = $(LDADD)
@@ -1275,14 +1276,14 @@ pepwindowall_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_plotcon_OBJECTS = plotcon.$(OBJEXT)
 plotcon_OBJECTS = $(am_plotcon_OBJECTS)
 plotcon_LDADD = $(LDADD)
 plotcon_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_plotorf_OBJECTS = plotorf.$(OBJEXT)
 plotorf_OBJECTS = $(am_plotorf_OBJECTS)
@@ -1290,7 +1291,7 @@ plotorf_LDADD = $(LDADD)
 plotorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_polydot_OBJECTS = polydot.$(OBJEXT)
 polydot_OBJECTS = $(am_polydot_OBJECTS)
@@ -1298,7 +1299,7 @@ polydot_LDADD = $(LDADD)
 polydot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_preg_OBJECTS = preg.$(OBJEXT)
 preg_OBJECTS = $(am_preg_OBJECTS)
@@ -1306,7 +1307,7 @@ preg_LDADD = $(LDADD)
 preg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_prettyplot_OBJECTS = prettyplot.$(OBJEXT)
 prettyplot_OBJECTS = $(am_prettyplot_OBJECTS)
@@ -1315,7 +1316,7 @@ prettyplot_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_prettyseq_OBJECTS = prettyseq.$(OBJEXT)
 prettyseq_OBJECTS = $(am_prettyseq_OBJECTS)
 prettyseq_LDADD = $(LDADD)
@@ -1323,14 +1324,14 @@ prettyseq_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_prima_OBJECTS = prima.$(OBJEXT)
 prima_OBJECTS = $(am_prima_OBJECTS)
 prima_LDADD = $(LDADD)
 prima_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_primers_OBJECTS = primers.$(OBJEXT)
 primers_OBJECTS = $(am_primers_OBJECTS)
@@ -1338,7 +1339,7 @@ primers_LDADD = $(LDADD)
 primers_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_primersearch_OBJECTS = primersearch.$(OBJEXT)
 primersearch_OBJECTS = $(am_primersearch_OBJECTS)
@@ -1347,7 +1348,7 @@ primersearch_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_printsextract_OBJECTS = printsextract.$(OBJEXT)
 printsextract_OBJECTS = $(am_printsextract_OBJECTS)
 printsextract_LDADD = $(LDADD)
@@ -1355,14 +1356,14 @@ printsextract_DEPENDENCIES = ../nucleus/
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_profit_OBJECTS = profit.$(OBJEXT)
 profit_OBJECTS = $(am_profit_OBJECTS)
 profit_LDADD = $(LDADD)
 profit_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_prophecy_OBJECTS = prophecy.$(OBJEXT)
 prophecy_OBJECTS = $(am_prophecy_OBJECTS)
@@ -1370,7 +1371,7 @@ prophecy_LDADD = $(LDADD)
 prophecy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_prophet_OBJECTS = prophet.$(OBJEXT)
 prophet_OBJECTS = $(am_prophet_OBJECTS)
@@ -1378,7 +1379,7 @@ prophet_LDADD = $(LDADD)
 prophet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_prosextract_OBJECTS = prosextract.$(OBJEXT)
 prosextract_OBJECTS = $(am_prosextract_OBJECTS)
@@ -1387,14 +1388,14 @@ prosextract_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_pscan_OBJECTS = pscan.$(OBJEXT)
 pscan_OBJECTS = $(am_pscan_OBJECTS)
 pscan_LDADD = $(LDADD)
 pscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_psiphi_OBJECTS = psiphi.$(OBJEXT)
 psiphi_OBJECTS = $(am_psiphi_OBJECTS)
@@ -1402,7 +1403,7 @@ psiphi_LDADD = $(LDADD)
 psiphi_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_rebaseextract_OBJECTS = rebaseextract.$(OBJEXT)
 rebaseextract_OBJECTS = $(am_rebaseextract_OBJECTS)
@@ -1411,14 +1412,14 @@ rebaseextract_DEPENDENCIES = ../nucleus/
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_recoder_OBJECTS = recoder.$(OBJEXT)
 recoder_OBJECTS = $(am_recoder_OBJECTS)
 recoder_LDADD = $(LDADD)
 recoder_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_redata_OBJECTS = redata.$(OBJEXT)
 redata_OBJECTS = $(am_redata_OBJECTS)
@@ -1426,7 +1427,7 @@ redata_LDADD = $(LDADD)
 redata_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_remap_OBJECTS = remap.$(OBJEXT)
 remap_OBJECTS = $(am_remap_OBJECTS)
@@ -1434,7 +1435,7 @@ remap_LDADD = $(LDADD)
 remap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_restover_OBJECTS = restover.$(OBJEXT)
 restover_OBJECTS = $(am_restover_OBJECTS)
@@ -1442,7 +1443,7 @@ restover_LDADD = $(LDADD)
 restover_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_restrict_OBJECTS = restrict.$(OBJEXT)
 restrict_OBJECTS = $(am_restrict_OBJECTS)
@@ -1450,7 +1451,7 @@ restrict_LDADD = $(LDADD)
 restrict_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_revseq_OBJECTS = revseq.$(OBJEXT)
 revseq_OBJECTS = $(am_revseq_OBJECTS)
@@ -1458,7 +1459,7 @@ revseq_LDADD = $(LDADD)
 revseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_seealso_OBJECTS = seealso.$(OBJEXT)
 seealso_OBJECTS = $(am_seealso_OBJECTS)
@@ -1466,7 +1467,7 @@ seealso_LDADD = $(LDADD)
 seealso_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_seqinfo_OBJECTS = seqinfo.$(OBJEXT)
 seqinfo_OBJECTS = $(am_seqinfo_OBJECTS)
@@ -1474,7 +1475,7 @@ seqinfo_LDADD = $(LDADD)
 seqinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_seqmatchall_OBJECTS = seqmatchall.$(OBJEXT)
 seqmatchall_OBJECTS = $(am_seqmatchall_OBJECTS)
@@ -1483,14 +1484,14 @@ seqmatchall_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_seqret_OBJECTS = seqret.$(OBJEXT)
 seqret_OBJECTS = $(am_seqret_OBJECTS)
 seqret_LDADD = $(LDADD)
 seqret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_seqretall_OBJECTS = seqretall.$(OBJEXT)
 seqretall_OBJECTS = $(am_seqretall_OBJECTS)
@@ -1499,7 +1500,7 @@ seqretall_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_seqretallfeat_OBJECTS = seqretallfeat.$(OBJEXT)
 seqretallfeat_OBJECTS = $(am_seqretallfeat_OBJECTS)
 seqretallfeat_LDADD = $(LDADD)
@@ -1507,7 +1508,7 @@ seqretallfeat_DEPENDENCIES = ../nucleus/
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_seqretset_OBJECTS = seqretset.$(OBJEXT)
 seqretset_OBJECTS = $(am_seqretset_OBJECTS)
 seqretset_LDADD = $(LDADD)
@@ -1515,7 +1516,7 @@ seqretset_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_seqretsetall_OBJECTS = seqretsetall.$(OBJEXT)
 seqretsetall_OBJECTS = $(am_seqretsetall_OBJECTS)
 seqretsetall_LDADD = $(LDADD)
@@ -1523,7 +1524,7 @@ seqretsetall_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_seqretsingle_OBJECTS = seqretsingle.$(OBJEXT)
 seqretsingle_OBJECTS = $(am_seqretsingle_OBJECTS)
 seqretsingle_LDADD = $(LDADD)
@@ -1531,7 +1532,7 @@ seqretsingle_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_seqretsplit_OBJECTS = seqretsplit.$(OBJEXT)
 seqretsplit_OBJECTS = $(am_seqretsplit_OBJECTS)
 seqretsplit_LDADD = $(LDADD)
@@ -1539,7 +1540,7 @@ seqretsplit_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_seqrettype_OBJECTS = seqrettype.$(OBJEXT)
 seqrettype_OBJECTS = $(am_seqrettype_OBJECTS)
 seqrettype_LDADD = $(LDADD)
@@ -1547,7 +1548,7 @@ seqrettype_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_showalign_OBJECTS = showalign.$(OBJEXT)
 showalign_OBJECTS = $(am_showalign_OBJECTS)
 showalign_LDADD = $(LDADD)
@@ -1555,14 +1556,14 @@ showalign_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_showdb_OBJECTS = showdb.$(OBJEXT)
 showdb_OBJECTS = $(am_showdb_OBJECTS)
 showdb_LDADD = $(LDADD)
 showdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_showfeat_OBJECTS = showfeat.$(OBJEXT)
 showfeat_OBJECTS = $(am_showfeat_OBJECTS)
@@ -1570,7 +1571,7 @@ showfeat_LDADD = $(LDADD)
 showfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_showorf_OBJECTS = showorf.$(OBJEXT)
 showorf_OBJECTS = $(am_showorf_OBJECTS)
@@ -1578,7 +1579,7 @@ showorf_LDADD = $(LDADD)
 showorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_showpep_OBJECTS = showpep.$(OBJEXT)
 showpep_OBJECTS = $(am_showpep_OBJECTS)
@@ -1586,7 +1587,7 @@ showpep_LDADD = $(LDADD)
 showpep_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_showseq_OBJECTS = showseq.$(OBJEXT)
 showseq_OBJECTS = $(am_showseq_OBJECTS)
@@ -1594,7 +1595,7 @@ showseq_LDADD = $(LDADD)
 showseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_shuffleseq_OBJECTS = shuffleseq.$(OBJEXT)
 shuffleseq_OBJECTS = $(am_shuffleseq_OBJECTS)
@@ -1603,7 +1604,7 @@ shuffleseq_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_sigcleave_OBJECTS = sigcleave.$(OBJEXT)
 sigcleave_OBJECTS = $(am_sigcleave_OBJECTS)
 sigcleave_LDADD = $(LDADD)
@@ -1611,14 +1612,14 @@ sigcleave_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_silent_OBJECTS = silent.$(OBJEXT)
 silent_OBJECTS = $(am_silent_OBJECTS)
 silent_LDADD = $(LDADD)
 silent_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_sirna_OBJECTS = sirna.$(OBJEXT)
 sirna_OBJECTS = $(am_sirna_OBJECTS)
@@ -1626,7 +1627,7 @@ sirna_LDADD = $(LDADD)
 sirna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_sixpack_OBJECTS = sixpack.$(OBJEXT)
 sixpack_OBJECTS = $(am_sixpack_OBJECTS)
@@ -1634,7 +1635,7 @@ sixpack_LDADD = $(LDADD)
 sixpack_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_sizeseq_OBJECTS = sizeseq.$(OBJEXT)
 sizeseq_OBJECTS = $(am_sizeseq_OBJECTS)
@@ -1642,7 +1643,7 @@ sizeseq_LDADD = $(LDADD)
 sizeseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_skipredundant_OBJECTS = skipredundant.$(OBJEXT)
 skipredundant_OBJECTS = $(am_skipredundant_OBJECTS)
@@ -1651,14 +1652,14 @@ skipredundant_DEPENDENCIES = ../nucleus/
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_skipseq_OBJECTS = skipseq.$(OBJEXT)
 skipseq_OBJECTS = $(am_skipseq_OBJECTS)
 skipseq_LDADD = $(LDADD)
 skipseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 splitsource_SOURCES = splitsource.c
 splitsource_OBJECTS = splitsource.$(OBJEXT)
@@ -1667,14 +1668,14 @@ splitsource_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_splitter_OBJECTS = splitter.$(OBJEXT)
 splitter_OBJECTS = $(am_splitter_OBJECTS)
 splitter_LDADD = $(LDADD)
 splitter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_sqltest_OBJECTS = sqltest.$(OBJEXT)
 sqltest_OBJECTS = $(am_sqltest_OBJECTS)
@@ -1682,7 +1683,7 @@ sqltest_LDADD = $(LDADD)
 sqltest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_stretcher_OBJECTS = stretcher.$(OBJEXT)
 stretcher_OBJECTS = $(am_stretcher_OBJECTS)
@@ -1691,7 +1692,7 @@ stretcher_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_stssearch_OBJECTS = stssearch.$(OBJEXT)
 stssearch_OBJECTS = $(am_stssearch_OBJECTS)
 stssearch_LDADD = $(LDADD)
@@ -1699,7 +1700,7 @@ stssearch_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_supermatcher_OBJECTS = supermatcher.$(OBJEXT)
 supermatcher_OBJECTS = $(am_supermatcher_OBJECTS)
 supermatcher_LDADD = $(LDADD)
@@ -1707,14 +1708,14 @@ supermatcher_DEPENDENCIES = ../nucleus/l
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_syco_OBJECTS = syco.$(OBJEXT)
 syco_OBJECTS = $(am_syco_OBJECTS)
 syco_LDADD = $(LDADD)
 syco_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_tcode_OBJECTS = tcode.$(OBJEXT)
 tcode_OBJECTS = $(am_tcode_OBJECTS)
@@ -1722,7 +1723,7 @@ tcode_LDADD = $(LDADD)
 tcode_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_testplot_OBJECTS = testplot.$(OBJEXT)
 testplot_OBJECTS = $(am_testplot_OBJECTS)
@@ -1730,7 +1731,7 @@ testplot_LDADD = $(LDADD)
 testplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_textsearch_OBJECTS = textsearch.$(OBJEXT)
 textsearch_OBJECTS = $(am_textsearch_OBJECTS)
@@ -1739,7 +1740,7 @@ textsearch_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_tfextract_OBJECTS = tfextract.$(OBJEXT)
 tfextract_OBJECTS = $(am_tfextract_OBJECTS)
 tfextract_LDADD = $(LDADD)
@@ -1747,14 +1748,14 @@ tfextract_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_tfm_OBJECTS = tfm.$(OBJEXT)
 tfm_OBJECTS = $(am_tfm_OBJECTS)
 tfm_LDADD = $(LDADD)
 tfm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_tfscan_OBJECTS = tfscan.$(OBJEXT)
 tfscan_OBJECTS = $(am_tfscan_OBJECTS)
@@ -1762,7 +1763,7 @@ tfscan_LDADD = $(LDADD)
 tfscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_tmap_OBJECTS = tmap.$(OBJEXT)
 tmap_OBJECTS = $(am_tmap_OBJECTS)
@@ -1770,7 +1771,7 @@ tmap_LDADD = $(LDADD)
 tmap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_tranalign_OBJECTS = tranalign.$(OBJEXT)
 tranalign_OBJECTS = $(am_tranalign_OBJECTS)
@@ -1779,14 +1780,14 @@ tranalign_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_transeq_OBJECTS = transeq.$(OBJEXT)
 transeq_OBJECTS = $(am_transeq_OBJECTS)
 transeq_LDADD = $(LDADD)
 transeq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_treetypedisplay_OBJECTS = treetypedisplay.$(OBJEXT)
 treetypedisplay_OBJECTS = $(am_treetypedisplay_OBJECTS)
@@ -1795,14 +1796,14 @@ treetypedisplay_DEPENDENCIES = ../nucleu
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_trimest_OBJECTS = trimest.$(OBJEXT)
 trimest_OBJECTS = $(am_trimest_OBJECTS)
 trimest_LDADD = $(LDADD)
 trimest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_trimseq_OBJECTS = trimseq.$(OBJEXT)
 trimseq_OBJECTS = $(am_trimseq_OBJECTS)
@@ -1810,7 +1811,7 @@ trimseq_LDADD = $(LDADD)
 trimseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_trimspace_OBJECTS = trimspace.$(OBJEXT)
 trimspace_OBJECTS = $(am_trimspace_OBJECTS)
@@ -1819,14 +1820,14 @@ trimspace_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_twofeat_OBJECTS = twofeat.$(OBJEXT)
 twofeat_OBJECTS = $(am_twofeat_OBJECTS)
 twofeat_LDADD = $(LDADD)
 twofeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_union_OBJECTS = union.$(OBJEXT)
 union_OBJECTS = $(am_union_OBJECTS)
@@ -1834,7 +1835,7 @@ union_LDADD = $(LDADD)
 union_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_vectorstrip_OBJECTS = vectorstrip.$(OBJEXT)
 vectorstrip_OBJECTS = $(am_vectorstrip_OBJECTS)
@@ -1843,14 +1844,14 @@ vectorstrip_DEPENDENCIES = ../nucleus/li
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_water_OBJECTS = water.$(OBJEXT)
 water_OBJECTS = $(am_water_OBJECTS)
 water_LDADD = $(LDADD)
 water_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_whichdb_OBJECTS = whichdb.$(OBJEXT)
 whichdb_OBJECTS = $(am_whichdb_OBJECTS)
@@ -1858,7 +1859,7 @@ whichdb_LDADD = $(LDADD)
 whichdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_wobble_OBJECTS = wobble.$(OBJEXT)
 wobble_OBJECTS = $(am_wobble_OBJECTS)
@@ -1866,7 +1867,7 @@ wobble_LDADD = $(LDADD)
 wobble_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_wordcount_OBJECTS = wordcount.$(OBJEXT)
 wordcount_OBJECTS = $(am_wordcount_OBJECTS)
@@ -1875,7 +1876,7 @@ wordcount_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_wordfinder_OBJECTS = wordfinder.$(OBJEXT)
 wordfinder_OBJECTS = $(am_wordfinder_OBJECTS)
 wordfinder_LDADD = $(LDADD)
@@ -1883,7 +1884,7 @@ wordfinder_DEPENDENCIES = ../nucleus/lib
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_wordmatch_OBJECTS = wordmatch.$(OBJEXT)
 wordmatch_OBJECTS = $(am_wordmatch_OBJECTS)
 wordmatch_LDADD = $(LDADD)
@@ -1891,14 +1892,14 @@ wordmatch_DEPENDENCIES = ../nucleus/libn
 	../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
 	../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
 	../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+	$(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
 am_wossname_OBJECTS = wossname.$(OBJEXT)
 wossname_OBJECTS = $(am_wossname_OBJECTS)
 wossname_LDADD = $(LDADD)
 wossname_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 am_yank_OBJECTS = yank.$(OBJEXT)
 yank_OBJECTS = $(am_yank_OBJECTS)
@@ -1906,7 +1907,7 @@ yank_LDADD = $(LDADD)
 yank_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
-	../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+	../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \
 	$(am__DEPENDENCIES_1)
 DEFAULT_INCLUDES = -I.@am__isrc@
 depcomp = $(SHELL) $(top_srcdir)/depcomp
@@ -2218,6 +2219,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
@@ -2303,7 +2306,7 @@ INCLUDES = -I$(top_srcdir)/nucleus \
 	-I$(top_srcdir)/ajax/expat \
 	-I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \
 	-I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \
-	-I$(top_srcdir)/ajax/acd -I$(top_srcdir)/plplot
+	-I$(top_srcdir)/ajax/acd $(PLPLOT_CFLAGS)
 
 aaindexextract_SOURCES = aaindexextract.c
 abiview_SOURCES = abiview.c
@@ -2528,7 +2531,7 @@ LDADD = ../nucleus/libnucleus.la ../ajax
 	../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
 	../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
 	../ajax/expat/libeexpat.la \
-	../plplot/libeplplot.la \
+	$(PLPLOT_LIBS) \
 	$(XLIB)
 
 pkgdata_DATA = emboss.default.template
diff -up EMBOSS-6.2.0/jemboss/api/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/Makefile.in.system-plplot	2010-04-07 12:06:27.573735436 -0400
+++ EMBOSS-6.2.0/jemboss/api/Makefile.in	2010-04-07 12:10:24.650735016 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/filetree/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/filetree/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/filetree/Makefile.in.system-plplot	2010-04-07 12:06:27.574735506 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/filetree/Makefile.in	2010-04-07 12:10:25.185735715 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/form/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/form/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/form/Makefile.in.system-plplot	2010-04-07 12:06:27.576736973 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/form/Makefile.in	2010-04-07 12:10:25.285734737 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/Makefile.in.system-plplot	2010-04-07 12:06:27.577738440 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/Makefile.in	2010-04-07 12:10:25.111734737 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile.in.system-plplot	2010-04-07 12:06:27.579735436 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile.in	2010-04-07 12:10:25.429735436 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/startup/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/startup/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/startup/Makefile.in.system-plplot	2010-04-07 12:06:27.580735436 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/startup/Makefile.in	2010-04-07 12:10:25.544736483 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/Makefile.in.system-plplot	2010-04-07 12:06:27.582738230 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/Makefile.in	2010-04-07 12:10:25.033735226 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/acd/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/acd/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/acd/Makefile.in.system-plplot	2010-04-07 12:06:27.584736205 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/acd/Makefile.in	2010-04-07 12:10:25.786735715 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/Makefile.in.system-plplot	2010-04-07 12:06:27.586736554 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/Makefile.in	2010-04-07 12:10:25.676735785 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/programs/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/programs/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/programs/Makefile.in.system-plplot	2010-04-07 12:06:27.587735436 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/programs/Makefile.in	2010-04-07 12:10:25.899736204 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/soap/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/soap/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/soap/Makefile.in.system-plplot	2010-04-07 12:06:27.588734878 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/soap/Makefile.in	2010-04-07 12:10:26.074735785 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/emboss/Makefile.in.system-plplot	2010-04-07 12:06:27.590735506 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/emboss/Makefile.in	2010-04-07 12:10:24.858735156 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/api/org/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/Makefile.in
--- EMBOSS-6.2.0/jemboss/api/org/Makefile.in.system-plplot	2010-04-07 12:06:27.591735366 -0400
+++ EMBOSS-6.2.0/jemboss/api/org/Makefile.in	2010-04-07 12:10:24.724734877 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/images/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/images/Makefile.in
--- EMBOSS-6.2.0/jemboss/images/Makefile.in.system-plplot	2010-04-07 12:06:27.592736135 -0400
+++ EMBOSS-6.2.0/jemboss/images/Makefile.in	2010-04-07 12:10:26.210735016 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/lib/axis/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/lib/axis/Makefile.in
--- EMBOSS-6.2.0/jemboss/lib/axis/Makefile.in.system-plplot	2010-04-07 12:06:27.594735297 -0400
+++ EMBOSS-6.2.0/jemboss/lib/axis/Makefile.in	2010-04-07 12:10:26.372735924 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/lib/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/lib/Makefile.in
--- EMBOSS-6.2.0/jemboss/lib/Makefile.in.system-plplot	2010-04-07 12:06:27.595735297 -0400
+++ EMBOSS-6.2.0/jemboss/lib/Makefile.in	2010-04-07 12:10:26.298734667 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/Makefile.in
--- EMBOSS-6.2.0/jemboss/Makefile.in.system-plplot	2010-04-07 12:06:27.597735646 -0400
+++ EMBOSS-6.2.0/jemboss/Makefile.in	2010-04-07 12:10:24.573736064 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/draw/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/draw/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/draw/Makefile.in.system-plplot	2010-04-07 12:06:27.598735297 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/draw/Makefile.in	2010-04-07 12:10:26.781735086 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/editor/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/editor/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/editor/Makefile.in.system-plplot	2010-04-07 12:06:27.599735786 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/editor/Makefile.in	2010-04-07 12:10:26.912735785 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/graphics/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/graphics/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/graphics/Makefile.in.system-plplot	2010-04-07 12:06:27.601735506 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/graphics/Makefile.in	2010-04-07 12:10:27.143749963 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/filetree/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/filetree/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/filetree/Makefile.in.system-plplot	2010-04-07 12:06:27.602735297 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/filetree/Makefile.in	2010-04-07 12:10:27.644735575 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/form/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/form/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/form/Makefile.in.system-plplot	2010-04-07 12:06:27.604735297 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/form/Makefile.in	2010-04-07 12:10:27.782735505 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/Makefile.in.system-plplot	2010-04-07 12:06:27.606735506 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/Makefile.in	2010-04-07 12:10:27.405735156 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile.in.system-plplot	2010-04-07 12:06:27.607736274 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile.in	2010-04-07 12:10:27.907735505 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/startup/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/startup/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/startup/Makefile.in.system-plplot	2010-04-07 12:06:27.608736484 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/startup/Makefile.in	2010-04-07 12:10:28.064734947 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/Makefile.in.system-plplot	2010-04-07 12:06:27.610735506 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/Makefile.in	2010-04-07 12:10:26.671734528 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/acd/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/acd/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/acd/Makefile.in.system-plplot	2010-04-07 12:06:27.611735576 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/acd/Makefile.in	2010-04-07 12:10:28.224735715 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/Makefile.in.system-plplot	2010-04-07 12:06:27.613735157 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/Makefile.in	2010-04-07 12:10:28.143742280 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/programs/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/programs/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/programs/Makefile.in.system-plplot	2010-04-07 12:06:27.614735087 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/programs/Makefile.in	2010-04-07 12:10:28.298735785 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/server/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/server/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/server/Makefile.in.system-plplot	2010-04-07 12:06:27.615739278 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/server/Makefile.in	2010-04-07 12:10:28.382738229 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/soap/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/soap/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/soap/Makefile.in.system-plplot	2010-04-07 12:06:27.617735436 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/soap/Makefile.in	2010-04-07 12:10:28.514737601 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/emboss/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/emboss/Makefile.in.system-plplot	2010-04-07 12:06:27.618735925 -0400
+++ EMBOSS-6.2.0/jemboss/org/emboss/Makefile.in	2010-04-07 12:10:26.541735226 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/org/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/Makefile.in
--- EMBOSS-6.2.0/jemboss/org/Makefile.in.system-plplot	2010-04-07 12:06:27.620735436 -0400
+++ EMBOSS-6.2.0/jemboss/org/Makefile.in	2010-04-07 12:10:26.450735156 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/resources/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/resources/Makefile.in
--- EMBOSS-6.2.0/jemboss/resources/Makefile.in.system-plplot	2010-04-07 12:06:27.621742979 -0400
+++ EMBOSS-6.2.0/jemboss/resources/Makefile.in	2010-04-07 12:10:28.731735086 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/jemboss/utils/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/utils/Makefile.in
--- EMBOSS-6.2.0/jemboss/utils/Makefile.in.system-plplot	2010-04-07 12:06:27.623736274 -0400
+++ EMBOSS-6.2.0/jemboss/utils/Makefile.in	2010-04-07 12:10:29.021734807 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/m4/plplot.m4.system-plplot EMBOSS-6.2.0/m4/plplot.m4
--- EMBOSS-6.2.0/m4/plplot.m4.system-plplot	2010-04-07 12:06:27.861735297 -0400
+++ EMBOSS-6.2.0/m4/plplot.m4	2010-04-07 12:06:27.861735297 -0400
@@ -0,0 +1,84 @@
+dnl @synopsis CHECK_PLPLOT([PLPLOT_LIBDIR, PLPLOT_INCDIR,
+dnl                      [ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]])
+dnl This macro figures out if the PlPlot library and header files
+dnl are installed.
+dnl You may wish to use these variables in your default LIBS and CFLAGS:
+dnl
+dnl        LIBS="$PLPLOT_LIBS $LIBS"
+dnl        CFLAGS="$CFLAGS $PLPLOT_CFLAGS"
+dnl
+dnl ACTION-IF-FOUND is a list of shell commands to run if PlPlot
+dnl is found (HAVE_PLPLOT is defined first), and ACTION-IF-NOT-FOUND
+dnl is a list of commands to run it if it is not found.
+dnl
+dnl @author Emmanuel Bertin <bertin@iap.fr>
+ 
+AC_DEFUN([CHECK_PLPLOT], [
+AC_REQUIRE([AC_CANONICAL_HOST])
+ 
+PLPLOT_LIBS=""
+OLIBS="$LIBS"
+LIBS=""
+ 
+check_plplot_ok=yes
+check_plplotpkg_ok=no
+if test x$2 = x && test x$1 = x; then
+  AC_MSG_CHECKING([for PLPlot pkg-config info])
+  if pkg-config --exists plplotd; then
+    AC_MSG_RESULT([yes])
+    [PLPLOT_CFLAGS=`pkg-config --cflags plplotd`]
+    [PLPLOT_LIBS=`pkg-config --libs plplotd`]
+    AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.])
+    AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.])
+    check_plplotpkg_ok=yes
+  else
+    AC_MSG_RESULT([no])
+  fi
+fi
+if test x$check_plplotpkg_ok = xno; then
+  if test x$2 = x; then
+    AC_CHECK_HEADER(plplot.h, [check_plplothead_ok=yes], [check_plplothead_ok=no])
+    if test x$check_plplothead_ok = xyes; then
+      AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.])
+      AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.])
+    else
+      AC_CHECK_HEADER(plplot/plplot.h,
+		[check_plplothead_ok=yes], [check_plplothead_ok=no])
+      if test x$check_plplothead_ok = xyes; then
+        AC_DEFINE(PLPLOT_H, "plplot/plplot.h", [PLPlot header filename.])
+        AC_DEFINE(PLPLOTP_H, "plplot/plplotP.h",
+		[PLPlot private header filename.])
+      else
+        check_plplot_ok=no
+      fi
+    fi
+  else
+    AC_CHECK_HEADER($2/plplot.h,
+		[check_plplothead_ok=yes], [check_plplothead_ok=no])
+    if test x$check_plplothead_ok = xyes; then
+      AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.])
+      AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.])
+     [PLPLOT_CFLAGS="-I$2"]
+    else
+      check_plplot_ok=no
+    fi
+  fi
+  if test x$1 = x; then
+    AC_CHECK_LIB(plplotd, c_plinit,, [check_plplot_ok=no])
+    [PLPLOT_LIBS="-lplplotd"]
+  else
+    AC_CHECK_LIB(plplotd, c_plinit,, [check_plplot_ok=no], [-L$1])
+    [PLPLOT_LIBS="-L$1 -lplplotd"]
+  fi
+fi
+ 
+LIBS="$OLIBS"
+if test x$check_plplot_ok = xyes; then
+  AC_SUBST(PLPLOT_CFLAGS)
+  AC_SUBST(PLPLOT_LIBS)
+  AC_DEFINE(HAVE_PLPLOT,1,
+	[Define if you have the PLPlot libraries and header files.])
+fi
+ 
+])dnl CHECK_PLPLOT
+
diff -up EMBOSS-6.2.0/Makefile.am.system-plplot EMBOSS-6.2.0/Makefile.am
--- EMBOSS-6.2.0/Makefile.am.system-plplot	2010-01-11 08:15:41.000000000 -0500
+++ EMBOSS-6.2.0/Makefile.am	2010-04-07 12:06:27.862735786 -0400
@@ -5,7 +5,7 @@ ACLOCAL_AMFLAGS = -I m4
 
 AUTOMAKE_OPTIONS = gnits
 
-SUBDIRS = plplot ajax nucleus emboss test doc jemboss
+SUBDIRS = ajax nucleus emboss test doc jemboss
 
 # AJAX_FIXED_ROOT = \"`pwd`/emboss/acd\"
 
@@ -20,6 +20,5 @@ dist-hook:
 	tar cBf - test | ( cd $(distdir); tar xBf - ; rm -rf test/CVS test/*/CVS ) 
 	tar cBf - emboss/acd | ( cd $(distdir); tar xBf - ; cd emboss/acd; rm -rf CVS ) 
 	tar cBf - emboss/data | ( cd $(distdir); tar xBf - ; cd emboss/data; rm -rf CVS */CVS */*/CVS ) 
-	tar cBf - plplot/lib | ( cd $(distdir); tar xBf - ; find plplot -name CVS | xargs rm -rf ) 
 	tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; ) 
 	tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf )
diff -up EMBOSS-6.2.0/Makefile.in.system-plplot EMBOSS-6.2.0/Makefile.in
--- EMBOSS-6.2.0/Makefile.in.system-plplot	2010-04-07 12:06:27.624735366 -0400
+++ EMBOSS-6.2.0/Makefile.in	2010-04-07 12:10:30.089735855 -0400
@@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \
@@ -172,6 +173,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
@@ -246,7 +249,7 @@ top_builddir = @top_builddir@
 top_srcdir = @top_srcdir@
 ACLOCAL_AMFLAGS = -I m4
 AUTOMAKE_OPTIONS = gnits
-SUBDIRS = plplot ajax nucleus emboss test doc jemboss
+SUBDIRS = ajax nucleus emboss test doc jemboss
 
 # AJAX_FIXED_ROOT = \"`pwd`/emboss/acd\"
 
@@ -746,7 +749,6 @@ dist-hook:
 	tar cBf - test | ( cd $(distdir); tar xBf - ; rm -rf test/CVS test/*/CVS ) 
 	tar cBf - emboss/acd | ( cd $(distdir); tar xBf - ; cd emboss/acd; rm -rf CVS ) 
 	tar cBf - emboss/data | ( cd $(distdir); tar xBf - ; cd emboss/data; rm -rf CVS */CVS */*/CVS ) 
-	tar cBf - plplot/lib | ( cd $(distdir); tar xBf - ; find plplot -name CVS | xargs rm -rf ) 
 	tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; ) 
 	tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf )
 
diff -up EMBOSS-6.2.0/nucleus/Makefile.am.system-plplot EMBOSS-6.2.0/nucleus/Makefile.am
--- EMBOSS-6.2.0/nucleus/Makefile.am.system-plplot	2010-04-07 12:06:27.701735646 -0400
+++ EMBOSS-6.2.0/nucleus/Makefile.am	2010-04-07 12:10:12.747737473 -0400
@@ -20,7 +20,7 @@ CYGWIN_LIBS = -L../plplot -L../ajax/pcre
 endif
 
 
-INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \
+INCLUDES = $(PLPLOT_CFLAGS) $(X_CFLAGS) -I$(srcdir)/ \
 	-I$(top_srcdir)/ajax \
 	-I$(top_srcdir)/ajax/expat \
 	-I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \
diff -up EMBOSS-6.2.0/nucleus/Makefile.in.system-plplot EMBOSS-6.2.0/nucleus/Makefile.in
--- EMBOSS-6.2.0/nucleus/Makefile.in.system-plplot	2010-04-07 12:06:27.703735576 -0400
+++ EMBOSS-6.2.0/nucleus/Makefile.in	2010-04-07 12:10:29.286735994 -0400
@@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -170,6 +171,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
@@ -253,7 +256,7 @@ AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS)
 @ISCYGWIN_TRUE@-L../ajax/acd -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre \
 @ISCYGWIN_TRUE@-lezlib -leplplot
 
-INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \
+INCLUDES = $(PLPLOT_CFLAGS) $(X_CFLAGS) -I$(srcdir)/ \
 	-I$(top_srcdir)/ajax \
 	-I$(top_srcdir)/ajax/expat \
 	-I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \
diff -up EMBOSS-6.2.0/test/data/Makefile.in.system-plplot EMBOSS-6.2.0/test/data/Makefile.in
--- EMBOSS-6.2.0/test/data/Makefile.in.system-plplot	2010-04-07 12:06:27.631735297 -0400
+++ EMBOSS-6.2.0/test/data/Makefile.in	2010-04-07 12:10:29.488738718 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/test/embl/Makefile.in.system-plplot EMBOSS-6.2.0/test/embl/Makefile.in
--- EMBOSS-6.2.0/test/embl/Makefile.in.system-plplot	2010-04-07 12:06:27.632735855 -0400
+++ EMBOSS-6.2.0/test/embl/Makefile.in	2010-04-07 12:10:29.559736972 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/test/genbank/Makefile.in.system-plplot EMBOSS-6.2.0/test/genbank/Makefile.in
--- EMBOSS-6.2.0/test/genbank/Makefile.in.system-plplot	2010-04-07 12:06:27.634742560 -0400
+++ EMBOSS-6.2.0/test/genbank/Makefile.in	2010-04-07 12:10:29.630735715 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/test/Makefile.in.system-plplot EMBOSS-6.2.0/test/Makefile.in
--- EMBOSS-6.2.0/test/Makefile.in.system-plplot	2010-04-07 12:06:27.635735576 -0400
+++ EMBOSS-6.2.0/test/Makefile.in	2010-04-07 12:10:29.396734528 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/test/pir/Makefile.in.system-plplot EMBOSS-6.2.0/test/pir/Makefile.in
--- EMBOSS-6.2.0/test/pir/Makefile.in.system-plplot	2010-04-07 12:06:27.637735297 -0400
+++ EMBOSS-6.2.0/test/pir/Makefile.in	2010-04-07 12:10:29.702735436 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/test/swiss/Makefile.in.system-plplot EMBOSS-6.2.0/test/swiss/Makefile.in
--- EMBOSS-6.2.0/test/swiss/Makefile.in.system-plplot	2010-04-07 12:06:27.638737881 -0400
+++ EMBOSS-6.2.0/test/swiss/Makefile.in	2010-04-07 12:10:29.775738229 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/test/swnew/Makefile.in.system-plplot EMBOSS-6.2.0/test/swnew/Makefile.in
--- EMBOSS-6.2.0/test/swnew/Makefile.in.system-plplot	2010-04-07 12:06:27.639735716 -0400
+++ EMBOSS-6.2.0/test/swnew/Makefile.in	2010-04-07 12:10:29.847735715 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@
diff -up EMBOSS-6.2.0/test/testdb/Makefile.in.system-plplot EMBOSS-6.2.0/test/testdb/Makefile.in
--- EMBOSS-6.2.0/test/testdb/Makefile.in.system-plplot	2010-04-07 12:06:27.641735436 -0400
+++ EMBOSS-6.2.0/test/testdb/Makefile.in	2010-04-07 12:10:29.964735575 -0400
@@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \
 	$(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \
 	$(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \
-	$(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \
-	$(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in
+	$(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \
+	$(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \
+	$(top_srcdir)/configure.in
 am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
 	$(ACLOCAL_M4)
 mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs
@@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@
 PACKAGE_VERSION = @PACKAGE_VERSION@
 PATH_SEPARATOR = @PATH_SEPARATOR@
 PG_CONFIG = @PG_CONFIG@
+PLPLOT_CFLAGS = @PLPLOT_CFLAGS@
+PLPLOT_LIBS = @PLPLOT_LIBS@
 POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@
 POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@
 POSTGRESQL_VERSION = @POSTGRESQL_VERSION@