The files in this directory are bugfix replacements for files in
the EMBOSS-6.1.0 distribution. Just drop the replacement files in
the location shown and redo the 'make install.'

Fix 1. EMBOSS-6.1.0/ajax/ajfeat.c
       EMBOSS-6.1.0/ajax/ajseqread.c
       EMBOSS-6.1.0/ajax/ajseqwrite.c
       EMBOSS-6.1.0/jemboss/org/emboss/jemboss/gui/Browser.java
       EMBOSS-6.1.0/jemboss/org/emboss/jemboss/gui/BuildProgramMenu.java
       EMBOSS-6.1.0/jemboss/org/emboss/jemboss/gui/form/BuildJembossForm.java
       EMBOSS-6.1.0/jemboss/org/emboss/jemboss/gui/sequenceChooser/InputSequenceAttributes.java
       EMBOSS-6.1.0/jemboss/org/emboss/jemboss/soap/GetVersion.java
       EMBOSS-6.1.0/jemboss/org/emboss/jemboss/soap/ShowDB.java
       EMBOSS-6.1.0/jemboss/utils/install-jemboss-server.sh
       EMBOSS-6.1.0/jemboss/lib/client.jar

29 Jul 2009: Fix feature specification problems in Jemboss.
             Use version number to point to documentation URLs
             Remove standalone option from server script.
             Correct FASTQ input searching for '@' to start next sequence
             Standardize FASTQ sequence formats with other OpenBio projects
             Correct issues in igstrict, genpept and refseqp formats

Fix 2. EMBOSS-6.1.0/ajax/ajmem.h
       EMBOSS-6.1.0/ajax/ajstr.c
       EMBOSS-6.1.0/ajax/ajstr.h
       EMBOSS-6.1.0/nucleus/embaln.c

24-Aug-2009: Fix string extension so that pointers in lists remain valid.
             This fixes a bug in processing SwissProt complex descriptions.
             Fix definition of AJRESIZE0 macro.
	     Fix processing of first match in a profile alignment (prophet).