diff -up EMBOSS-6.2.0/ajax/acd/Makefile.am.system-zlib EMBOSS-6.2.0/ajax/acd/Makefile.am
--- EMBOSS-6.2.0/ajax/acd/Makefile.am.system-zlib 2010-04-07 11:07:01.396623546 -0400
+++ EMBOSS-6.2.0/ajax/acd/Makefile.am 2010-04-07 11:07:07.927610627 -0400
@@ -14,7 +14,6 @@ endif
INCLUDES = -I$(top_srcdir)/plplot \
-I$(top_srcdir)/ajax/expat \
--I$(top_srcdir)/ajax/zlib \
-I$(top_srcdir)/ajax/core \
-I$(top_srcdir)/ajax/graphics \
-I$(top_srcdir)/ajax/ensembl \
diff -up EMBOSS-6.2.0/ajax/acd/Makefile.in.system-zlib EMBOSS-6.2.0/ajax/acd/Makefile.in
--- EMBOSS-6.2.0/ajax/acd/Makefile.in.system-zlib 2010-04-07 11:07:29.414735784 -0400
+++ EMBOSS-6.2.0/ajax/acd/Makefile.in 2010-04-07 11:07:36.731626479 -0400
@@ -249,7 +249,6 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL
INCLUDES = -I$(top_srcdir)/plplot \
-I$(top_srcdir)/ajax/expat \
--I$(top_srcdir)/ajax/zlib \
-I$(top_srcdir)/ajax/core \
-I$(top_srcdir)/ajax/graphics \
-I$(top_srcdir)/ajax/ensembl \
diff -up EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am.system-zlib EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am
--- EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am.system-zlib 2010-04-07 11:06:20.851737757 -0400
+++ EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am 2010-04-07 11:06:29.801611985 -0400
@@ -12,7 +12,7 @@ CYGWIN_LDAJAXDB = -L../../plplot -L../pc
endif
INCLUDES = -I$(top_srcdir)/plplot \
--I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib \
+-I$(top_srcdir)/ajax/expat \
-I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl
AJAXDBSRC = ajseqdb.c
diff -up EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in.system-zlib EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in
--- EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in.system-zlib 2010-04-07 11:06:38.783614724 -0400
+++ EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in 2010-04-07 11:06:49.945628759 -0400
@@ -247,7 +247,7 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL
@ISCYGWIN_TRUE@-L../ensembl -lensembl lajax -leplplot -leexpat -lepcre -lezlib
INCLUDES = -I$(top_srcdir)/plplot \
--I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib \
+-I$(top_srcdir)/ajax/expat \
-I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl
AJAXDBSRC = ajseqdb.c
diff -up EMBOSS-6.2.0/ajax/core/Makefile.am.system-zlib EMBOSS-6.2.0/ajax/core/Makefile.am
--- EMBOSS-6.2.0/ajax/core/Makefile.am.system-zlib 2010-04-07 11:06:00.841615447 -0400
+++ EMBOSS-6.2.0/ajax/core/Makefile.am 2010-04-07 11:06:01.026610069 -0400
@@ -13,8 +13,7 @@ endif
INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \
-DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \
--I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat \
--I$(top_srcdir)/ajax/zlib
+-I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat
AJAXSRC = ajalign.c ajarr.c ajassert.c \
ajbase.c ajcall.c ajcod.c \
diff -up EMBOSS-6.2.0/ajax/core/Makefile.in.system-zlib EMBOSS-6.2.0/ajax/core/Makefile.in
--- EMBOSS-6.2.0/ajax/core/Makefile.in.system-zlib 2010-04-07 11:06:00.843616774 -0400
+++ EMBOSS-6.2.0/ajax/core/Makefile.in 2010-04-07 11:06:01.027609999 -0400
@@ -256,8 +256,7 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL
INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \
-DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \
--I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat \
--I$(top_srcdir)/ajax/zlib
+-I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat
AJAXSRC = ajalign.c ajarr.c ajassert.c \
ajbase.c ajcall.c ajcod.c \
diff -up EMBOSS-6.2.0/ajax/Makefile.am.system-zlib EMBOSS-6.2.0/ajax/Makefile.am
--- EMBOSS-6.2.0/ajax/Makefile.am.system-zlib 2010-04-07 11:06:00.852610488 -0400
+++ EMBOSS-6.2.0/ajax/Makefile.am 2010-04-07 11:06:01.028610488 -0400
@@ -1,2 +1,2 @@
## Process this file with automake to produce Makefile.in
-SUBDIRS = expat zlib core graphics ensembl ajaxdb acd
+SUBDIRS = expat core graphics ensembl ajaxdb acd
diff -up EMBOSS-6.2.0/ajax/Makefile.in.system-zlib EMBOSS-6.2.0/ajax/Makefile.in
--- EMBOSS-6.2.0/ajax/Makefile.in.system-zlib 2010-04-07 11:06:00.853610977 -0400
+++ EMBOSS-6.2.0/ajax/Makefile.in 2010-04-07 11:06:01.029609510 -0400
@@ -229,7 +229,7 @@ target_alias = @target_alias@
top_build_prefix = @top_build_prefix@
top_builddir = @top_builddir@
top_srcdir = @top_srcdir@
-SUBDIRS = expat zlib core graphics ensembl ajaxdb acd
+SUBDIRS = expat core graphics ensembl ajaxdb acd
all: all-recursive
.SUFFIXES:
diff -up EMBOSS-6.2.0/configure.in.system-zlib EMBOSS-6.2.0/configure.in
--- EMBOSS-6.2.0/configure.in.system-zlib 2010-04-07 11:06:00.880609720 -0400
+++ EMBOSS-6.2.0/configure.in 2010-04-07 11:06:01.030610488 -0400
@@ -587,7 +587,7 @@ CHECK_THREADS
AC_OUTPUT([plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile
-ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile
+ajax/expat/Makefile ajax/core/Makefile
ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile
ajax/acd/Makefile
emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile
diff -up EMBOSS-6.2.0/configure.system-zlib EMBOSS-6.2.0/configure
--- EMBOSS-6.2.0/configure.system-zlib 2010-04-07 11:06:00.909610069 -0400
+++ EMBOSS-6.2.0/configure 2010-04-07 11:06:01.040611396 -0400
@@ -15042,7 +15042,7 @@ fi
-ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/api/Makefile jemboss/api/org/Makefile jemboss/api/org/emboss/Makefile jemboss/api/org/emboss/jemboss/Makefile jemboss/api/org/emboss/jemboss/gui/Makefile jemboss/api/org/emboss/jemboss/gui/filetree/Makefile jemboss/api/org/emboss/jemboss/gui/form/Makefile jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/api/org/emboss/jemboss/gui/startup/Makefile jemboss/api/org/emboss/jemboss/parser/Makefile jemboss/api/org/emboss/jemboss/parser/acd/Makefile jemboss/api/org/emboss/jemboss/programs/Makefile jemboss/api/org/emboss/jemboss/soap/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/org/Makefile jemboss/org/emboss/Makefile jemboss/org/emboss/jemboss/Makefile jemboss/org/emboss/jemboss/graphics/Makefile jemboss/org/emboss/jemboss/gui/Makefile jemboss/org/emboss/jemboss/gui/filetree/Makefile jemboss/org/emboss/jemboss/gui/form/Makefile jemboss/org/emboss/jemboss/gui/startup/Makefile jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/org/emboss/jemboss/parser/Makefile jemboss/org/emboss/jemboss/parser/acd/Makefile jemboss/org/emboss/jemboss/programs/Makefile jemboss/org/emboss/jemboss/server/Makefile jemboss/org/emboss/jemboss/soap/Makefile jemboss/org/emboss/jemboss/editor/Makefile jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile"
+ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/api/Makefile jemboss/api/org/Makefile jemboss/api/org/emboss/Makefile jemboss/api/org/emboss/jemboss/Makefile jemboss/api/org/emboss/jemboss/gui/Makefile jemboss/api/org/emboss/jemboss/gui/filetree/Makefile jemboss/api/org/emboss/jemboss/gui/form/Makefile jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/api/org/emboss/jemboss/gui/startup/Makefile jemboss/api/org/emboss/jemboss/parser/Makefile jemboss/api/org/emboss/jemboss/parser/acd/Makefile jemboss/api/org/emboss/jemboss/programs/Makefile jemboss/api/org/emboss/jemboss/soap/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/org/Makefile jemboss/org/emboss/Makefile jemboss/org/emboss/jemboss/Makefile jemboss/org/emboss/jemboss/graphics/Makefile jemboss/org/emboss/jemboss/gui/Makefile jemboss/org/emboss/jemboss/gui/filetree/Makefile jemboss/org/emboss/jemboss/gui/form/Makefile jemboss/org/emboss/jemboss/gui/startup/Makefile jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/org/emboss/jemboss/parser/Makefile jemboss/org/emboss/jemboss/parser/acd/Makefile jemboss/org/emboss/jemboss/programs/Makefile jemboss/org/emboss/jemboss/server/Makefile jemboss/org/emboss/jemboss/soap/Makefile jemboss/org/emboss/jemboss/editor/Makefile jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile"
cat >confcache <<\_ACEOF
# This file is a shell script that caches the results of configure
@@ -16081,7 +16081,6 @@ do
"nucleus/Makefile") CONFIG_FILES="$CONFIG_FILES nucleus/Makefile" ;;
"ajax/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/Makefile" ;;
"ajax/expat/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/expat/Makefile" ;;
- "ajax/zlib/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/zlib/Makefile" ;;
"ajax/core/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/core/Makefile" ;;
"ajax/graphics/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/graphics/Makefile" ;;
"ajax/ensembl/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/ensembl/Makefile" ;;
diff -up EMBOSS-6.2.0/emboss/Makefile.am.system-zlib EMBOSS-6.2.0/emboss/Makefile.am
--- EMBOSS-6.2.0/emboss/Makefile.am.system-zlib 2010-04-07 11:06:00.938610209 -0400
+++ EMBOSS-6.2.0/emboss/Makefile.am 2010-04-07 11:06:01.041612863 -0400
@@ -77,7 +77,7 @@ yank
INCLUDES = -I$(top_srcdir)/nucleus \
- -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib \
+ -I$(top_srcdir)/ajax/expat \
-I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \
-I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \
-I$(top_srcdir)/ajax/acd -I$(top_srcdir)/plplot
@@ -308,7 +308,7 @@ treetypedisplay_SOURCES = treetypedispla
LDADD = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
+ ../ajax/expat/libeexpat.la \
../plplot/libeplplot.la \
$(XLIB)
diff -up EMBOSS-6.2.0/emboss/Makefile.in.system-zlib EMBOSS-6.2.0/emboss/Makefile.in
--- EMBOSS-6.2.0/emboss/Makefile.in.system-zlib 2010-04-07 11:06:00.946610628 -0400
+++ EMBOSS-6.2.0/emboss/Makefile.in 2010-04-07 11:06:01.048610837 -0400
@@ -130,1866 +130,1784 @@ am__DEPENDENCIES_1 =
aaindexextract_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_abiview_OBJECTS = abiview.$(OBJEXT)
abiview_OBJECTS = $(am_abiview_OBJECTS)
abiview_LDADD = $(LDADD)
abiview_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_acdc_OBJECTS = acdc.$(OBJEXT)
acdc_OBJECTS = $(am_acdc_OBJECTS)
acdc_LDADD = $(LDADD)
acdc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_acdlog_OBJECTS = acdlog.$(OBJEXT)
acdlog_OBJECTS = $(am_acdlog_OBJECTS)
acdlog_LDADD = $(LDADD)
acdlog_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_acdpretty_OBJECTS = acdpretty.$(OBJEXT)
acdpretty_OBJECTS = $(am_acdpretty_OBJECTS)
acdpretty_LDADD = $(LDADD)
acdpretty_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_acdrelations_OBJECTS = acdrelations.$(OBJEXT)
acdrelations_OBJECTS = $(am_acdrelations_OBJECTS)
acdrelations_LDADD = $(LDADD)
acdrelations_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_acdtable_OBJECTS = acdtable.$(OBJEXT)
acdtable_OBJECTS = $(am_acdtable_OBJECTS)
acdtable_LDADD = $(LDADD)
acdtable_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_acdtrace_OBJECTS = acdtrace.$(OBJEXT)
acdtrace_OBJECTS = $(am_acdtrace_OBJECTS)
acdtrace_LDADD = $(LDADD)
acdtrace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_acdvalid_OBJECTS = acdvalid.$(OBJEXT)
acdvalid_OBJECTS = $(am_acdvalid_OBJECTS)
acdvalid_LDADD = $(LDADD)
acdvalid_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_acdxsd_OBJECTS = acdxsd.$(OBJEXT)
acdxsd_OBJECTS = $(am_acdxsd_OBJECTS)
acdxsd_LDADD = $(LDADD)
acdxsd_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_ajtest_OBJECTS = ajtest.$(OBJEXT)
ajtest_OBJECTS = $(am_ajtest_OBJECTS)
ajtest_LDADD = $(LDADD)
ajtest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_aligncopy_OBJECTS = aligncopy.$(OBJEXT)
aligncopy_OBJECTS = $(am_aligncopy_OBJECTS)
aligncopy_LDADD = $(LDADD)
aligncopy_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_aligncopypair_OBJECTS = aligncopypair.$(OBJEXT)
aligncopypair_OBJECTS = $(am_aligncopypair_OBJECTS)
aligncopypair_LDADD = $(LDADD)
aligncopypair_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_antigenic_OBJECTS = antigenic.$(OBJEXT)
antigenic_OBJECTS = $(am_antigenic_OBJECTS)
antigenic_LDADD = $(LDADD)
antigenic_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
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../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_sqltest_OBJECTS = sqltest.$(OBJEXT)
sqltest_OBJECTS = $(am_sqltest_OBJECTS)
sqltest_LDADD = $(LDADD)
sqltest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_stretcher_OBJECTS = stretcher.$(OBJEXT)
stretcher_OBJECTS = $(am_stretcher_OBJECTS)
stretcher_LDADD = $(LDADD)
stretcher_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_stssearch_OBJECTS = stssearch.$(OBJEXT)
stssearch_OBJECTS = $(am_stssearch_OBJECTS)
stssearch_LDADD = $(LDADD)
stssearch_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_supermatcher_OBJECTS = supermatcher.$(OBJEXT)
supermatcher_OBJECTS = $(am_supermatcher_OBJECTS)
supermatcher_LDADD = $(LDADD)
supermatcher_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_syco_OBJECTS = syco.$(OBJEXT)
syco_OBJECTS = $(am_syco_OBJECTS)
syco_LDADD = $(LDADD)
syco_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_tcode_OBJECTS = tcode.$(OBJEXT)
tcode_OBJECTS = $(am_tcode_OBJECTS)
tcode_LDADD = $(LDADD)
tcode_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_testplot_OBJECTS = testplot.$(OBJEXT)
testplot_OBJECTS = $(am_testplot_OBJECTS)
testplot_LDADD = $(LDADD)
testplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_textsearch_OBJECTS = textsearch.$(OBJEXT)
textsearch_OBJECTS = $(am_textsearch_OBJECTS)
textsearch_LDADD = $(LDADD)
textsearch_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_tfextract_OBJECTS = tfextract.$(OBJEXT)
tfextract_OBJECTS = $(am_tfextract_OBJECTS)
tfextract_LDADD = $(LDADD)
tfextract_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_tfm_OBJECTS = tfm.$(OBJEXT)
tfm_OBJECTS = $(am_tfm_OBJECTS)
tfm_LDADD = $(LDADD)
tfm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_tfscan_OBJECTS = tfscan.$(OBJEXT)
tfscan_OBJECTS = $(am_tfscan_OBJECTS)
tfscan_LDADD = $(LDADD)
tfscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_tmap_OBJECTS = tmap.$(OBJEXT)
tmap_OBJECTS = $(am_tmap_OBJECTS)
tmap_LDADD = $(LDADD)
tmap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_tranalign_OBJECTS = tranalign.$(OBJEXT)
tranalign_OBJECTS = $(am_tranalign_OBJECTS)
tranalign_LDADD = $(LDADD)
tranalign_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_transeq_OBJECTS = transeq.$(OBJEXT)
transeq_OBJECTS = $(am_transeq_OBJECTS)
transeq_LDADD = $(LDADD)
transeq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_treetypedisplay_OBJECTS = treetypedisplay.$(OBJEXT)
treetypedisplay_OBJECTS = $(am_treetypedisplay_OBJECTS)
treetypedisplay_LDADD = $(LDADD)
treetypedisplay_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_trimest_OBJECTS = trimest.$(OBJEXT)
trimest_OBJECTS = $(am_trimest_OBJECTS)
trimest_LDADD = $(LDADD)
trimest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_trimseq_OBJECTS = trimseq.$(OBJEXT)
trimseq_OBJECTS = $(am_trimseq_OBJECTS)
trimseq_LDADD = $(LDADD)
trimseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_trimspace_OBJECTS = trimspace.$(OBJEXT)
trimspace_OBJECTS = $(am_trimspace_OBJECTS)
trimspace_LDADD = $(LDADD)
trimspace_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_twofeat_OBJECTS = twofeat.$(OBJEXT)
twofeat_OBJECTS = $(am_twofeat_OBJECTS)
twofeat_LDADD = $(LDADD)
twofeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_union_OBJECTS = union.$(OBJEXT)
union_OBJECTS = $(am_union_OBJECTS)
union_LDADD = $(LDADD)
union_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_vectorstrip_OBJECTS = vectorstrip.$(OBJEXT)
vectorstrip_OBJECTS = $(am_vectorstrip_OBJECTS)
vectorstrip_LDADD = $(LDADD)
vectorstrip_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_water_OBJECTS = water.$(OBJEXT)
water_OBJECTS = $(am_water_OBJECTS)
water_LDADD = $(LDADD)
water_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_whichdb_OBJECTS = whichdb.$(OBJEXT)
whichdb_OBJECTS = $(am_whichdb_OBJECTS)
whichdb_LDADD = $(LDADD)
whichdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_wobble_OBJECTS = wobble.$(OBJEXT)
wobble_OBJECTS = $(am_wobble_OBJECTS)
wobble_LDADD = $(LDADD)
wobble_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_wordcount_OBJECTS = wordcount.$(OBJEXT)
wordcount_OBJECTS = $(am_wordcount_OBJECTS)
wordcount_LDADD = $(LDADD)
wordcount_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_wordfinder_OBJECTS = wordfinder.$(OBJEXT)
wordfinder_OBJECTS = $(am_wordfinder_OBJECTS)
wordfinder_LDADD = $(LDADD)
wordfinder_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_wordmatch_OBJECTS = wordmatch.$(OBJEXT)
wordmatch_OBJECTS = $(am_wordmatch_OBJECTS)
wordmatch_LDADD = $(LDADD)
wordmatch_DEPENDENCIES = ../nucleus/libnucleus.la \
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \
- ../ajax/core/libajax.la ../ajax/zlib/libezlib.la \
- ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
- $(am__DEPENDENCIES_1)
+ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \
+ ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
am_wossname_OBJECTS = wossname.$(OBJEXT)
wossname_OBJECTS = $(am_wossname_OBJECTS)
wossname_LDADD = $(LDADD)
wossname_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
am_yank_OBJECTS = yank.$(OBJEXT)
yank_OBJECTS = $(am_yank_OBJECTS)
yank_LDADD = $(LDADD)
yank_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
- ../plplot/libeplplot.la $(am__DEPENDENCIES_1)
+ ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \
+ $(am__DEPENDENCIES_1)
DEFAULT_INCLUDES = -I.@am__isrc@
depcomp = $(SHELL) $(top_srcdir)/depcomp
am__depfiles_maybe = depfiles
@@ -2382,7 +2300,7 @@ EXTRA_DIST = emboss.default.template
AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS) $(DEVWARN_CFLAGS)
INCLUDES = -I$(top_srcdir)/nucleus \
- -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib \
+ -I$(top_srcdir)/ajax/expat \
-I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \
-I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \
-I$(top_srcdir)/ajax/acd -I$(top_srcdir)/plplot
@@ -2609,7 +2527,7 @@ treetypedisplay_SOURCES = treetypedispla
LDADD = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \
../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \
- ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la \
+ ../ajax/expat/libeexpat.la \
../plplot/libeplplot.la \
$(XLIB)
diff -up EMBOSS-6.2.0/nucleus/Makefile.am.system-zlib EMBOSS-6.2.0/nucleus/Makefile.am
--- EMBOSS-6.2.0/nucleus/Makefile.am.system-zlib 2010-04-07 11:09:08.382737742 -0400
+++ EMBOSS-6.2.0/nucleus/Makefile.am 2010-04-07 11:09:17.358612935 -0400
@@ -22,7 +22,7 @@ endif
INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \
-I$(top_srcdir)/ajax \
- -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib \
+ -I$(top_srcdir)/ajax/expat \
-I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \
-I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \
-I$(top_srcdir)/ajax/acd
diff -up EMBOSS-6.2.0/nucleus/Makefile.in.system-zlib EMBOSS-6.2.0/nucleus/Makefile.in
--- EMBOSS-6.2.0/nucleus/Makefile.in.system-zlib 2010-04-07 11:09:27.560737246 -0400
+++ EMBOSS-6.2.0/nucleus/Makefile.in 2010-04-07 11:09:41.715613433 -0400
@@ -255,7 +255,7 @@ AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS)
INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \
-I$(top_srcdir)/ajax \
- -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib \
+ -I$(top_srcdir)/ajax/expat \
-I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \
-I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \
-I$(top_srcdir)/ajax/acd