The files in this directory are bugfix replacements for files in
the EMBOSS-6.3.1 distribution. Just drop the replacement files in
the location shown and redo the 'make install.'

Fix 1. EMBOSS-6.3.1/configure
       EMBOSS-6.3.1/m4/mysql.m4

21 Jul 2010: Addresses a problem whereby, in some circumstances, inclusion of
             hpdf support prevented inclusion of MySQL support.
             Using the mysql.m4 from this patch may cause a libtool
             error during compilation if you have a version of libtool
             greater than 2.2.6b on your system. If this happens type
             "autoreconf -fi" after adding the file. Note that you
             do not need to use the mysql.m4 file and it is probably
             safer not to; just use the configure file.

Fix 2. EMBOSS-6.3.1/configure

6 Aug 2010: This is exactly the same as Fix 1 above, but the associated
            file in the patches directory does not contain the
            mysql.m4 file - it is unnecessary for the operation of the
            EMBOSS distribution. Using this patch will not cause the
            libtool problem described above.


Fix 3. EMBOSS-6.3.1/ajax/graphics/ajgraph.c

9 Aug 2010: Fix potential crash using -debug


Fix 4. EMBOSS-6.3.1/ajax/ensembl/ensregistry.c
       EMBOSS-6.3.1/ajax/ajaxdb/ajseqdb.c.c

9 Aug 2010: Allow two Ensembl sequences to be loaded without re-registering.
            Fix Ensembl Genomes registration.
            Fix Ensembl Genomes identifiers for species without stable
            identifiers. If the identifier does not obey a stable identifier
            pattern, it is matched against Exons, Transcripts and
            Translations in exactly that order.