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e210861 |
The files in this directory are bugfix replacements for files in
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206681a |
the EMBOSS-6.3.1 distribution. Just drop the replacement files in
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e210861 |
the location shown and redo the 'make install.'
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e210861 |
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206681a |
Fix 1. EMBOSS-6.3.1/configure
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206681a |
EMBOSS-6.3.1/m4/mysql.m4
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e210861 |
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21 Jul 2010: Addresses a problem whereby, in some circumstances, inclusion of
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hpdf support prevented inclusion of MySQL support.
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5466a51 |
Using the mysql.m4 from this patch may cause a libtool
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error during compilation if you have a version of libtool
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greater than 2.2.6b on your system. If this happens type
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"autoreconf -fi" after adding the file. Note that you
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do not need to use the mysql.m4 file and it is probably
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5466a51 |
safer not to; just use the configure file.
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Fix 2. EMBOSS-6.3.1/configure
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5466a51 |
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6 Aug 2010: This is exactly the same as Fix 1 above, but the associated
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file in the patches directory does not contain the
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mysql.m4 file - it is unnecessary for the operation of the
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EMBOSS distribution. Using this patch will not cause the
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libtool problem described above.
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5466a51 |
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5466a51 |
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Fix 3. EMBOSS-6.3.1/ajax/graphics/ajgraph.c
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5466a51 |
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9 Aug 2010: Fix potential crash using -debug
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Fix 4. EMBOSS-6.3.1/ajax/ensembl/ensregistry.c
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EMBOSS-6.3.1/ajax/ajaxdb/ajseqdb.c.c
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9 Aug 2010: Allow two Ensembl sequences to be loaded without re-registering.
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5466a51 |
Fix Ensembl Genomes registration.
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5466a51 |
Fix Ensembl Genomes identifiers for species without stable
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identifiers. If the identifier does not obey a stable identifier
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pattern, it is matched against Exons, Transcripts and
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Translations in exactly that order.
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