# setup.py does not list all requirements, and we also unbundle quite a few # from the externals folder, so we can't only rely on the automatic generator # here. # Additionally, requirements.txt seems to be dev requirements, and is not used # in setup.py for install_requires. %global modname mne Name: python-%{modname} Version: 0.22.0 Release: 1%{?dist} Summary: Magnetoencephalography (MEG) and Electroencephalography (EEG) data analysis # Bundled FieldTrip # https://github.com/fieldtrip/fieldtrip/blob/master/realtime/src/buffer/python/FieldTrip.py # Not possible to package because it is matlab package with some plugins License: BSD URL: http://martinos.org/mne/ Source0: https://github.com/mne-tools/mne-python/archive/v%{version}/%{name}-%{version}.tar.gz #Source1: https://s3.amazonaws.com/mne-python/datasets/MNE-sample-data-processed.tar.gz BuildArch: noarch %description This package is designed for sensor- and source-space analysis of M-EEG data, including frequency-domain and time-frequency analyses and non-parametric statistics. %{?python_enable_dependency_generator} %package -n python3-%{modname} Summary: %{summary} %{?python_provide:%python_provide python3-%{modname}} Provides: bundled(bootstrap) Provides: bundled(js-jquery) Provides: bundled(js-jquery-ui) Provides: bundled(js-d3) Provides: bundled(js-mpld3) Provides: bundled(python3-FieldTrip) BuildRequires: python3-devel BuildRequires: python3-setuptools BuildRequires: python3-numpy BuildRequires: python3-scipy # Test deps BuildRequires: python3-pytest BuildRequires: python3-pytest-cov BuildRequires: python3-pytest-mock BuildRequires: python3-pytest-xdist BuildRequires: python3-pytest-timeout BuildRequires: python3-matplotlib BuildRequires: python3-pandas BuildRequires: python3-h5py BuildRequires: python3-decorator BuildRequires: python3-pymatreader BuildRequires: python3-h5io BuildRequires: python3-tempita BuildRequires: python3-scikit-learn BuildRequires: python3-Traits BuildRequires: python3-tqdm BuildRequires: python3-nibabel BuildRequires: python3-nilearn BuildRequires: python3-qt5 BuildRequires: python3-dipy BuildRequires: python3-xlrd Requires: python3-matplotlib Requires: python3-decorator Requires: python3-h5io Requires: python3-six Requires: python3-tempita Requires: python3-funcsigs Requires: python3-pymatreader Recommends: python3-scikit-learn Recommends: python3-pandas Recommends: python3-patsy Recommends: python3-pillow Recommends: python3-h5py Recommends: python3-statsmodels Recommends: python3-Traits # Should be included by the dep generator as they're mentioned in setup.py # Requires: python3-numpy # Requires: python3-scipy %description -n python3-%{modname} This package is designed for sensor- and source-space analysis of M-EEG data, including frequency-domain and time-frequency analyses and non-parametric statistics. Python 3 version. %prep %autosetup -n %{modname}-python-%{version} pushd %{modname}/externals/ # Remove bundled six, tqdm, decorator, tempita, h5io # Save bundled FieldTrip (can't find upstream) rm -rf decorator.py doccer.py pymatreader/ tempita/ h5io/ tqdm/ # Check that only {FieldTrip,__init__}.py remain [ $(find -maxdepth 1 -mindepth 1 | grep -v FieldTrip.py | grep -v __init__.py | wc -l) -eq 0 ] || exit 1 popd # use all six/tqdm/decorator/h5io/funcsigs/pymatreader from system # fix API change for jdjcal/jcal2jd find -type f -name '*.py' -exec sed -i \ -e "s/from mne.externals.six/from six/" \ -e "s/from \.*externals.six/from six/" \ -e "s/from mne.externals import six/import six/" \ -e "s/from \.*externals import six/import six/" \ -e "s/from \.*externals.decorator/from decorator/" \ -e "s/from mne.externals.h5io/from h5io/" \ -e "s/from \.*externals.h5io/from h5io/" \ -e "s/from \.*externals.tempita/from tempita/" \ -e "s/from \.*externals.funcsigs/from funcsigs/" \ -e "s/from \.*externals.pymatreader/from pymatreader/" \ -e "s/from mne.externals.pymatreader/from pymatreader/" \ -e "s/from \.*.externals.tqdm/from tqdm/" \ -e "s/from mne.externals.tqdm/from tqdm/" \ -e "s/from \.*externals import tqdm/import tqdm\n from tqdm import auto/"\ -e "s/from \.*externals.doccer/from scipy.misc.doccer/" \ -e "s/jd2jcal(\(.*\))/jd2jcal(\1, 0)[:-1]/" \ -e "s/(jcal2jd(\(.*\)))/(jcal2jd(\1)[-1])/" \ {} ';' sed -i -e "/mne\.externals\.[^']*/d" setup.py sed -i -e '1{\@^#!/usr/bin/env python@d}' %{modname}/commands/*.py #cp -p %{SOURCE1} . #python -c "import mne; mne.datasets.sample.data_path(verbose=True, download=False)" %build %py3_build %install %py3_install %check export MNE_SKIP_TESTING_DATASET_TESTS=true export MNE_SKIP_NETWORK_TESTS=1 export MNE_DONTWRITE_HOME=true export MNE_FORCE_SERIAL=true export PYTHONPATH=%{buildroot}%{python3_sitearch} # Deselected tests require additional data or don't work in mock # Two deselected for sklearn warnings: pytest-%{python3_version}\ --deselect mne/utils/tests/test_logging.py\ --deselect mne/tests/test_report.py\ --deselect mne/beamformer/tests/test_lcmv.py\ --deselect mne/io/curry/tests/test_curry.py\ --deselect mne/io/tests/test_meas_info.py\ --deselect mne/tests/test_chpi.py\ --deselect mne/viz/tests/test_topomap.py\ --deselect mne/preprocessing/tests/test_peak_finder.py\ --deselect mne/io/tests/test_constants.py\ --deselect mne/datasets/tests/test_datasets.py %files -n python3-%{modname} %license LICENSE.txt %doc README.rst examples %{_bindir}/%{modname} %{python3_sitelib}/%{modname}/ %{python3_sitelib}/%{modname}-*.egg-info/ %changelog * Wed Dec 30 2020 Aniket Pradhan - 0.22.0-1 - Update to v0.22.0 - Fix tests for s390x arch * Sat Nov 07 2020 Aniket Pradhan - 0.21.2-1 - Update to v0.21.2 - enable test: mne/preprocessing/tests/test_xdawn.py. Fixed upstream * Sat Nov 07 2020 Aniket Pradhan - 0.21.1-1 - Update to v0.21.1 - Fix tqdm imports - Temporarily disable test: mne/preprocessing/tests/test_xdawn.py * Sat Aug 01 2020 Fedora Release Engineering - 0.20.7-3 - Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Wed Jul 29 2020 Fedora Release Engineering - 0.20.7-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild * Sun Jun 21 2020 Ankur Sinha - 0.20.7-1 - Update to 0.20.7 * Tue Jun 02 2020 Ankur Sinha - 0.20.4-2 - Deselect failing tests: test_scalar, test_get_coef - https://github.com/mne-tools/mne-python/issues/7860 * Tue May 26 2020 Miro Hrončok - 0.20.4-2 - Rebuilt for Python 3.9 * Sat Apr 04 2020 Aniket Pradhan - 0.20.4-1 - Update to v0.20.4 - Fix dependencies (removed jdcal, added tqdm and others) - Deselected tests that require additional data * Thu Jan 30 2020 Fedora Release Engineering - 0.19.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild * Mon Nov 11 2019 Aniket Pradhan - 0.19.1-1 - Update to v0.19.1 * Thu Oct 10 2019 Ankur Sinha - 0.19.0-1 - Update to new upstream release * Mon Aug 19 2019 Miro Hrončok - 0.18.1-3 - Rebuilt for Python 3.8 * Fri Jul 26 2019 Fedora Release Engineering - 0.18.1-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild * Tue May 28 2019 Ankur Sinha - 0.18.1-1 - Update to 0.18.1 (rbhz 1695469) - Use dep generator - Remove bundled doccer - Remove missing AUTHORS file * Fri Feb 22 2019 Manas Mangaonkar - 0.17.1-1 - Update to latest release * Sat Feb 02 2019 Fedora Release Engineering - 0.17-2 - Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild * Tue Nov 20 2018 Ankur Sinha - 0.17-1 - Update to latest release - Use system funcsigs and pymatreader * Wed Oct 17 2018 Zbigniew Jędrzejewski-Szmek - 0.13.1-9 - Subpackage python2-mne has been removed See https://fedoraproject.org/wiki/Changes/Mass_Python_2_Package_Removal * Sat Jul 14 2018 Fedora Release Engineering - 0.13.1-8 - Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild * Tue Jun 19 2018 Miro Hrončok - 0.13.1-7 - Rebuilt for Python 3.7 * Fri Feb 09 2018 Fedora Release Engineering - 0.13.1-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild * Thu Jan 25 2018 Iryna Shcherbina - 0.13.1-5 - Update Python 2 dependency declarations to new packaging standards (See https://fedoraproject.org/wiki/FinalizingFedoraSwitchtoPython3) * Thu Jul 27 2017 Fedora Release Engineering - 0.13.1-4 - Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild * Sat Feb 11 2017 Fedora Release Engineering - 0.13.1-3 - Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild * Mon Dec 19 2016 Miro Hrončok - 0.13.1-2 - Rebuild for Python 3.6 * Tue Nov 29 2016 Igor Gnatenko - 0.13.1-1 - Update to 0.13.1 * Mon Sep 26 2016 Dominik Mierzejewski - 0.10-8 - rebuilt for matplotlib-2.0.0 * Tue Jul 19 2016 Fedora Release Engineering - 0.10-7 - https://fedoraproject.org/wiki/Changes/Automatic_Provides_for_Python_RPM_Packages * Thu Feb 04 2016 Fedora Release Engineering - 0.10-6 - Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild * Sun Nov 29 2015 Igor Gnatenko - 0.10-5 - Rebuild for fixed scipy * Wed Nov 11 2015 Igor Gnatenko - 0.10-4 - Fix non-executable-script * Mon Nov 09 2015 Igor Gnatenko - 0.10-3 - Fix unbundling jdcal * Sun Nov 08 2015 Igor Gnatenko - 0.10-2 - /usr/bin/mne uses python3 - fix dependencies around Traits (add py3 version) - unbundle jdcal/six/decorator/tempita/h5io - add Provides: bundled(pythonX-FieldTrip) - More better Summary * Fri Oct 30 2015 Igor Gnatenko - 0.10-1 - Initial package