diff --git a/.gitignore b/.gitignore
index dfcb98a..684e521 100644
--- a/.gitignore
+++ b/.gitignore
@@ -11,3 +11,4 @@ biopython-1.54.tar.gz
/biopython-1.69.tar.gz
/biopython-biopython-170.tar.gz
/biopython-biopython-171.tar.gz
+/biopython-1.72.tar.gz
diff --git a/python-biopython-bug1695.patch b/python-biopython-bug1695.patch
deleted file mode 100644
index a356131..0000000
--- a/python-biopython-bug1695.patch
+++ /dev/null
@@ -1,108 +0,0 @@
-From 1d4c4a16c49d95d3c52e77c1e62c687ec64b284d Mon Sep 17 00:00:00 2001
-From: peterjc
-Date: Thu, 21 Jun 2018 14:29:31 +0100
-Subject: [PATCH 1/3] Avoid leaking StopIteration in Bio/bgzf.py
-
-Still using this as an internal end-of-file, thus
-end-of-iteration signal, which is perhaps not ideal.
-
-See https://www.python.org/dev/peps/pep-0479/
----
- Bio/bgzf.py | 15 +++++++++++----
- 1 file changed, 11 insertions(+), 4 deletions(-)
-
-diff --git a/Bio/bgzf.py b/Bio/bgzf.py
-index efa6262afa..e539ec4905 100755
---- a/Bio/bgzf.py
-+++ b/Bio/bgzf.py
-@@ -391,18 +391,25 @@ def BgzfBlocks(handle):
- data_start = 0
- while True:
- start_offset = handle.tell()
-- # This may raise StopIteration which is perfect here
-- block_length, data = _load_bgzf_block(handle)
-+ try:
-+ block_length, data = _load_bgzf_block(handle)
-+ except StopIteration:
-+ break
- data_len = len(data)
- yield start_offset, block_length, data_start, data_len
- data_start += data_len
-
-
- def _load_bgzf_block(handle, text_mode=False):
-- """Load the next BGZF block of compressed data (PRIVATE)."""
-+ """Load the next BGZF block of compressed data (PRIVATE).
-+
-+ Returns a tuple (block size and data), or at end of file
-+ will raise StopIteration.
-+ """
- magic = handle.read(4)
- if not magic:
-- # End of file
-+ # End of file - should we signal this differently now?
-+ # See https://www.python.org/dev/peps/pep-0479/
- raise StopIteration
- if magic != _bgzf_magic:
- raise ValueError(r"A BGZF (e.g. a BAM file) block should start with "
-
-From 0694c396ef7988e3c032d27e86fb131257812687 Mon Sep 17 00:00:00 2001
-From: peterjc
-Date: Thu, 21 Jun 2018 16:12:14 +0100
-Subject: [PATCH 2/3] Return None in generator functions, not StopIteration
-
-See https://www.python.org/dev/peps/pep-0479/
----
- Bio/TogoWS/__init__.py | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/Bio/TogoWS/__init__.py b/Bio/TogoWS/__init__.py
-index 4018244bcf..3cf5309c8a 100644
---- a/Bio/TogoWS/__init__.py
-+++ b/Bio/TogoWS/__init__.py
-@@ -199,7 +199,7 @@ def search_iter(db, query, limit=None, batch=100):
- """
- count = search_count(db, query)
- if not count:
-- raise StopIteration
-+ return
- # NOTE - We leave it to TogoWS to enforce any upper bound on each
- # batch, they currently return an HTTP 400 Bad Request if above 100.
- remain = count
-
-From 86eb2275448da22aa6976c6c7c46f9779af95cf1 Mon Sep 17 00:00:00 2001
-From: peterjc
-Date: Thu, 21 Jun 2018 16:22:51 +0100
-Subject: [PATCH 3/3] Fix Nexus StopIteration error under Python 3.7.0rc1
-
-Reported as Biopython GitHub issue #1693 via Fedora
-packaging work for Python 3.7.
-
-The StopIteration from the Nexus comment parsing could
-propogate up to AlignIO and cause a failure there too.
-See:
-
-https://github.com/biopython/biopython/issues/1693
-
-This is in some way triggered by the changes for PEP479,
-where inappropriate StopIteration exceptions get turned
-into RuntimeError exceptions instead, see:
-
-https://www.python.org/dev/peps/pep-0479/
----
- Bio/Nexus/Nexus.py | 2 ++
- 1 file changed, 2 insertions(+)
-
-diff --git a/Bio/Nexus/Nexus.py b/Bio/Nexus/Nexus.py
-index 18b0a9f9c7..6faf95e569 100644
---- a/Bio/Nexus/Nexus.py
-+++ b/Bio/Nexus/Nexus.py
-@@ -444,6 +444,8 @@ def _kill_comments_and_break_lines(text):
-
- NOTE: this function is very slow for large files, and obsolete when using C extension cnexus
- """
-+ if not text:
-+ return ""
- contents = iter(text)
- newtext = []
- newline = []
diff --git a/python-biopython.spec b/python-biopython.spec
index 9c26e25..e362c70 100644
--- a/python-biopython.spec
+++ b/python-biopython.spec
@@ -17,14 +17,10 @@
%global module biopython
Name: python-biopython
-Version: 1.71
-Release: 5%{?dist}
+Version: 1.72
+Release: 1%{?dist}
Summary: Python tools for computational molecular biology
-Source0: https://github.com/biopython/biopython/archive/biopython-171.tar.gz#/biopython-biopython-171.tar.gz
-
-# https://github.com/biopython/biopython/issues/1693
-# # https://github.com/biopython/biopython/issues/1695
-Patch0: python-biopython-bug1695.patch
+Source0: https://files.pythonhosted.org/packages/source/b/%{module}/%{module}-%{version}.tar.gz
# Starting from biopython-1.69, BioPython is released under the
# "Biopython License Agreement"; it looks like a MIT variant
@@ -125,7 +121,7 @@ PDF/HTML documentation of %{module}.
%prep
%setup -qc
-mv %{module}-%{module}-171 python2
+mv %{module}-1.72 python2
pushd python2
# remove all execute bits from documentation and fix line endings
@@ -141,9 +137,6 @@ popd
%if 0%{?with_python3}
cp -a python2 python3
-pushd python3
-%patch0 -p1
-popd
%endif # with_python3
%build
@@ -220,6 +213,9 @@ popd
%license python2/LICENSE
%changelog
+* Sat Jun 30 2018 Antonio Trande - 1.72-1
+- Update to 1.72
+
* Fri Jun 22 2018 Antonio Trande - 1.71-5
- Enable additional tests (upstream bug #855)
- Enable DSSP test with Python2
diff --git a/sources b/sources
index 7fcad34..9eee9ff 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-SHA512 (biopython-biopython-171.tar.gz) = 450f7e2aed09b8764b10268c98b9b824d63864c78cdccf4014e64f385850b870890ae915b56310bcb6da06df90728eeb59009ea78e32f221d86d70c043f1dc33
+SHA512 (biopython-1.72.tar.gz) = e2ce74f4533c9c779c8fbafb73ed562c890209a4318fc9d8616ec98670ee5e97649b8c1b0207c91454b923faecf375f20bd6a0aaff52ccc73268fb0b1ea0b44c