From ac057cad5ee359eeb3f5abb92e36e14b9c79a8c4 Mon Sep 17 00:00:00 2001
From: Sandro Mani <manisandro@gmail.com>
Date: Jan 15 2019 10:39:57 +0000
Subject: Update to 4.1.0


---

diff --git a/.gitignore b/.gitignore
index 2bf2730..b6fb024 100644
--- a/.gitignore
+++ b/.gitignore
@@ -28,3 +28,4 @@
 /gmsh-4.0.5-source-fedora.tar.xz
 /gmsh-4.0.6-source-fedora.tar.xz
 /gmsh-4.0.7-source-fedora.tar.xz
+/gmsh-4.1.0-source-fedora.tar.xz
diff --git a/gmsh.spec b/gmsh.spec
index fe9b480..75fbaee 100644
--- a/gmsh.spec
+++ b/gmsh.spec
@@ -3,7 +3,7 @@
 
 Name:       gmsh
 Summary:    A three-dimensional finite element mesh generator
-Version:    4.0.7
+Version:    4.1.0
 Release:    1%{?dist}
 
 License:    GPLv2+
@@ -381,7 +381,7 @@ rm -f %{buildroot}%{_defaultdocdir}/%{name}/LICENSE.txt
 
 %files libs
 %license LICENSE.txt
-%{_libdir}/libgmsh.so.4.0*
+%{_libdir}/libgmsh.so.4.1*
 
 %files -n python3-%{name}
 %{python3_sitelib}/gmsh.py
@@ -405,7 +405,7 @@ rm -f %{buildroot}%{_defaultdocdir}/%{name}/LICENSE.txt
 
 %files openmpi-libs
 %license LICENSE.txt
-%{_libdir}/openmpi/lib/libgmsh.so.4.0*
+%{_libdir}/openmpi/lib/libgmsh.so.4.1*
 %endif
 
 %if %{with mpich}
@@ -423,11 +423,14 @@ rm -f %{buildroot}%{_defaultdocdir}/%{name}/LICENSE.txt
 
 %files mpich-libs
 %license LICENSE.txt
-%{_libdir}/mpich/lib/libgmsh.so.4.0*
+%{_libdir}/mpich/lib/libgmsh.so.4.1*
 %endif
 
 
 %changelog
+* Mon Jan 14 2019 Sandro Mani <manisandro@gmail.com> - 4.1.0-1
+- Update to 4.1.0
+
 * Mon Dec 10 2018 Sandro Mani <manisandro@gmail.com> - 4.0.7-1
 - Update to 4.0.7
 
diff --git a/gmsh_alglib.patch b/gmsh_alglib.patch
index 9b823d6..3075a40 100644
--- a/gmsh_alglib.patch
+++ b/gmsh_alglib.patch
@@ -1,6 +1,6 @@
-diff -rupN gmsh-4.0.7-source/contrib/HighOrderMeshOptimizer/OptHOM.cpp gmsh-4.0.7-source-new/contrib/HighOrderMeshOptimizer/OptHOM.cpp
---- gmsh-4.0.7-source/contrib/HighOrderMeshOptimizer/OptHOM.cpp	2018-10-21 12:15:16.000000000 +0200
-+++ gmsh-4.0.7-source-new/contrib/HighOrderMeshOptimizer/OptHOM.cpp	2018-12-10 16:42:02.619728663 +0100
+diff -rupN gmsh-4.1.0-source/contrib/HighOrderMeshOptimizer/OptHOM.cpp gmsh-4.1.0-source-new/contrib/HighOrderMeshOptimizer/OptHOM.cpp
+--- gmsh-4.1.0-source/contrib/HighOrderMeshOptimizer/OptHOM.cpp	2018-10-21 12:15:16.000000000 +0200
++++ gmsh-4.1.0-source-new/contrib/HighOrderMeshOptimizer/OptHOM.cpp	2019-01-14 23:36:00.034389836 +0100
 @@ -41,11 +41,11 @@ static int NEVAL = 0;
  
  #if defined(HAVE_BFGS)
@@ -18,9 +18,9 @@ diff -rupN gmsh-4.0.7-source/contrib/HighOrderMeshOptimizer/OptHOM.cpp gmsh-4.0.
  
  static inline double compute_f(double v, double barrier)
  {
-diff -rupN gmsh-4.0.7-source/contrib/HighOrderMeshOptimizer/OptHOM.h gmsh-4.0.7-source-new/contrib/HighOrderMeshOptimizer/OptHOM.h
---- gmsh-4.0.7-source/contrib/HighOrderMeshOptimizer/OptHOM.h	2018-10-21 12:15:16.000000000 +0200
-+++ gmsh-4.0.7-source-new/contrib/HighOrderMeshOptimizer/OptHOM.h	2018-12-10 16:42:02.619728663 +0100
+diff -rupN gmsh-4.1.0-source/contrib/HighOrderMeshOptimizer/OptHOM.h gmsh-4.1.0-source-new/contrib/HighOrderMeshOptimizer/OptHOM.h
+--- gmsh-4.1.0-source/contrib/HighOrderMeshOptimizer/OptHOM.h	2018-10-21 12:15:16.000000000 +0200
++++ gmsh-4.1.0-source-new/contrib/HighOrderMeshOptimizer/OptHOM.h	2019-01-14 23:36:00.035389837 +0100
 @@ -35,7 +35,7 @@
  
  #if defined(HAVE_BFGS)
@@ -30,9 +30,9 @@ diff -rupN gmsh-4.0.7-source/contrib/HighOrderMeshOptimizer/OptHOM.h gmsh-4.0.7-
  
  class OptHOM
  {
-diff -rupN gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOpt.cpp gmsh-4.0.7-source-new/contrib/MeshOptimizer/MeshOpt.cpp
---- gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOpt.cpp	2018-10-21 12:15:16.000000000 +0200
-+++ gmsh-4.0.7-source-new/contrib/MeshOptimizer/MeshOpt.cpp	2018-12-10 16:42:02.619728663 +0100
+diff -rupN gmsh-4.1.0-source/contrib/MeshOptimizer/MeshOpt.cpp gmsh-4.1.0-source-new/contrib/MeshOptimizer/MeshOpt.cpp
+--- gmsh-4.1.0-source/contrib/MeshOptimizer/MeshOpt.cpp	2018-10-21 12:15:16.000000000 +0200
++++ gmsh-4.1.0-source-new/contrib/MeshOptimizer/MeshOpt.cpp	2019-01-14 23:36:00.035389837 +0100
 @@ -35,11 +35,11 @@
  
  #if defined(HAVE_BFGS)
@@ -50,9 +50,9 @@ diff -rupN gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOpt.cpp gmsh-4.0.7-source
  
  namespace {
  
-diff -rupN gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOpt.h gmsh-4.0.7-source-new/contrib/MeshOptimizer/MeshOpt.h
---- gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOpt.h	2018-10-21 12:15:16.000000000 +0200
-+++ gmsh-4.0.7-source-new/contrib/MeshOptimizer/MeshOpt.h	2018-12-10 16:42:02.619728663 +0100
+diff -rupN gmsh-4.1.0-source/contrib/MeshOptimizer/MeshOpt.h gmsh-4.1.0-source-new/contrib/MeshOptimizer/MeshOpt.h
+--- gmsh-4.1.0-source/contrib/MeshOptimizer/MeshOpt.h	2018-10-21 12:15:16.000000000 +0200
++++ gmsh-4.1.0-source-new/contrib/MeshOptimizer/MeshOpt.h	2019-01-14 23:36:00.035389837 +0100
 @@ -39,7 +39,7 @@
  
  #if defined(HAVE_BFGS)
@@ -62,9 +62,9 @@ diff -rupN gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOpt.h gmsh-4.0.7-source-n
  
  class MeshOptParameters;
  
-diff -rupN gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOptObjContrib.h gmsh-4.0.7-source-new/contrib/MeshOptimizer/MeshOptObjContrib.h
---- gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOptObjContrib.h	2017-10-03 22:01:51.000000000 +0200
-+++ gmsh-4.0.7-source-new/contrib/MeshOptimizer/MeshOptObjContrib.h	2018-12-10 16:42:02.620728662 +0100
+diff -rupN gmsh-4.1.0-source/contrib/MeshOptimizer/MeshOptObjContrib.h gmsh-4.1.0-source-new/contrib/MeshOptimizer/MeshOptObjContrib.h
+--- gmsh-4.1.0-source/contrib/MeshOptimizer/MeshOptObjContrib.h	2017-10-03 22:01:51.000000000 +0200
++++ gmsh-4.1.0-source-new/contrib/MeshOptimizer/MeshOptObjContrib.h	2019-01-14 23:36:00.035389837 +0100
 @@ -4,7 +4,7 @@
  #define _MESHOPTOBJCONTRIB_H_
  
@@ -74,9 +74,9 @@ diff -rupN gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOptObjContrib.h gmsh-4.0.
  #include "MeshOptCommon.h"
  
  
-diff -rupN gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOptObjectiveFunction.h gmsh-4.0.7-source-new/contrib/MeshOptimizer/MeshOptObjectiveFunction.h
---- gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOptObjectiveFunction.h	2017-10-03 22:01:51.000000000 +0200
-+++ gmsh-4.0.7-source-new/contrib/MeshOptimizer/MeshOptObjectiveFunction.h	2018-12-10 16:42:02.620728662 +0100
+diff -rupN gmsh-4.1.0-source/contrib/MeshOptimizer/MeshOptObjectiveFunction.h gmsh-4.1.0-source-new/contrib/MeshOptimizer/MeshOptObjectiveFunction.h
+--- gmsh-4.1.0-source/contrib/MeshOptimizer/MeshOptObjectiveFunction.h	2017-10-03 22:01:51.000000000 +0200
++++ gmsh-4.1.0-source-new/contrib/MeshOptimizer/MeshOptObjectiveFunction.h	2019-01-14 23:36:00.035389837 +0100
 @@ -5,7 +5,7 @@
  
  #include <string>
@@ -86,9 +86,9 @@ diff -rupN gmsh-4.0.7-source/contrib/MeshOptimizer/MeshOptObjectiveFunction.h gm
  
  class ObjContrib;
  class Patch;
-diff -rupN gmsh-4.0.7-source/Geo/GFace.cpp gmsh-4.0.7-source-new/Geo/GFace.cpp
---- gmsh-4.0.7-source/Geo/GFace.cpp	2018-12-09 14:02:39.000000000 +0100
-+++ gmsh-4.0.7-source-new/Geo/GFace.cpp	2018-12-10 16:42:02.620728662 +0100
+diff -rupN gmsh-4.1.0-source/Geo/GFace.cpp gmsh-4.1.0-source-new/Geo/GFace.cpp
+--- gmsh-4.1.0-source/Geo/GFace.cpp	2018-12-29 15:02:14.000000000 +0100
++++ gmsh-4.1.0-source-new/Geo/GFace.cpp	2019-01-14 23:36:00.036389839 +0100
 @@ -27,8 +27,8 @@
  #endif
  
diff --git a/gmsh_build.patch b/gmsh_build.patch
index 50caa1d..8c55f30 100644
--- a/gmsh_build.patch
+++ b/gmsh_build.patch
@@ -1,6 +1,6 @@
-diff -rupN gmsh-4.0.7-source/Common/CommandLine.cpp gmsh-4.0.7-source-new/Common/CommandLine.cpp
---- gmsh-4.0.7-source/Common/CommandLine.cpp	2018-12-10 16:42:03.093728156 +0100
-+++ gmsh-4.0.7-source-new/Common/CommandLine.cpp	2018-12-10 16:42:03.096728153 +0100
+diff -rupN gmsh-4.1.0-source/Common/CommandLine.cpp gmsh-4.1.0-source-new/Common/CommandLine.cpp
+--- gmsh-4.1.0-source/Common/CommandLine.cpp	2019-01-14 23:36:00.651390922 +0100
++++ gmsh-4.1.0-source-new/Common/CommandLine.cpp	2019-01-14 23:36:00.655390929 +0100
 @@ -22,15 +22,6 @@
  #include "GmshGlobal.h"
  #include "StringUtils.h"
@@ -33,12 +33,12 @@ diff -rupN gmsh-4.0.7-source/Common/CommandLine.cpp gmsh-4.0.7-source-new/Common
  int GetGmshMajorVersion(){ return GMSH_MAJOR_VERSION; }
  int GetGmshMinorVersion(){ return GMSH_MINOR_VERSION; }
  int GetGmshPatchVersion(){ return GMSH_PATCH_VERSION; }
-diff -rupN gmsh-4.0.7-source/Fltk/helpWindow.cpp gmsh-4.0.7-source-new/Fltk/helpWindow.cpp
---- gmsh-4.0.7-source/Fltk/helpWindow.cpp	2018-12-10 16:42:03.093728156 +0100
-+++ gmsh-4.0.7-source-new/Fltk/helpWindow.cpp	2018-12-10 16:42:03.096728153 +0100
+diff -rupN gmsh-4.1.0-source/Fltk/helpWindow.cpp gmsh-4.1.0-source-new/Fltk/helpWindow.cpp
+--- gmsh-4.1.0-source/Fltk/helpWindow.cpp	2019-01-14 23:36:00.651390922 +0100
++++ gmsh-4.1.0-source-new/Fltk/helpWindow.cpp	2019-01-14 23:36:00.656390930 +0100
 @@ -3,13 +3,18 @@
  // See the LICENSE.txt file for license information. Please report all
- // issues on https://gitlab.onelab.info/gmsh/gmsh/issues
+ // issues on https://gitlab.onelab.info/gmsh/gmsh/issues.
  
 +#include "GmshConfig.h"
 +
@@ -67,9 +67,9 @@ diff -rupN gmsh-4.0.7-source/Fltk/helpWindow.cpp gmsh-4.0.7-source-new/Fltk/help
  static const char *help_link(Fl_Widget *w, const char *uri)
  {
    fl_open_uri(uri);
-diff -rupN gmsh-4.0.7-source/Geo/GModelIO_MED.cpp gmsh-4.0.7-source-new/Geo/GModelIO_MED.cpp
---- gmsh-4.0.7-source/Geo/GModelIO_MED.cpp	2018-12-10 16:42:03.094728155 +0100
-+++ gmsh-4.0.7-source-new/Geo/GModelIO_MED.cpp	2018-12-10 16:42:03.096728153 +0100
+diff -rupN gmsh-4.1.0-source/Geo/GModelIO_MED.cpp gmsh-4.1.0-source-new/Geo/GModelIO_MED.cpp
+--- gmsh-4.1.0-source/Geo/GModelIO_MED.cpp	2019-01-14 23:36:00.651390922 +0100
++++ gmsh-4.1.0-source-new/Geo/GModelIO_MED.cpp	2019-01-14 23:36:00.656390930 +0100
 @@ -26,9 +26,7 @@
  #include "discreteVertex.h"
  #include "Context.h"
@@ -78,11 +78,11 @@ diff -rupN gmsh-4.0.7-source/Geo/GModelIO_MED.cpp gmsh-4.0.7-source-new/Geo/GMod
  #include <med/med.h>
 -}
  
- #if(MED_MAJOR_NUM == 3)
+ #if(MED_MAJOR_NUM >= 3)
  // To avoid too many ifdefs below we use defines for the bits of the
-diff -rupN gmsh-4.0.7-source/Post/PViewDataGModelIO.cpp gmsh-4.0.7-source-new/Post/PViewDataGModelIO.cpp
---- gmsh-4.0.7-source/Post/PViewDataGModelIO.cpp	2018-12-10 16:42:03.094728155 +0100
-+++ gmsh-4.0.7-source-new/Post/PViewDataGModelIO.cpp	2018-12-10 16:42:03.097728152 +0100
+diff -rupN gmsh-4.1.0-source/Post/PViewDataGModelIO.cpp gmsh-4.1.0-source-new/Post/PViewDataGModelIO.cpp
+--- gmsh-4.1.0-source/Post/PViewDataGModelIO.cpp	2019-01-14 23:36:00.652390923 +0100
++++ gmsh-4.1.0-source-new/Post/PViewDataGModelIO.cpp	2019-01-14 23:36:00.657390932 +0100
 @@ -469,9 +469,7 @@ void PViewDataGModel::importLists(int N[
  
  #if defined(HAVE_MED)
@@ -91,5 +91,5 @@ diff -rupN gmsh-4.0.7-source/Post/PViewDataGModelIO.cpp gmsh-4.0.7-source-new/Po
  #include <med/med.h>
 -}
  
- #if(MED_MAJOR_NUM == 3)
+ #if(MED_MAJOR_NUM >= 3)
  // To avoid too many ifdefs below we use defines for the bits of the
diff --git a/gmsh_c++14.patch b/gmsh_c++14.patch
index b56d0e6..c4a6742 100644
--- a/gmsh_c++14.patch
+++ b/gmsh_c++14.patch
@@ -1,13 +1,13 @@
-diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
---- gmsh-4.0.7-source/CMakeLists.txt	2018-12-10 16:42:02.856728410 +0100
-+++ gmsh-4.0.7-source-new/CMakeLists.txt	2018-12-10 16:42:02.859728407 +0100
+diff -rupN gmsh-4.1.0-source/CMakeLists.txt gmsh-4.1.0-source-new/CMakeLists.txt
+--- gmsh-4.1.0-source/CMakeLists.txt	2019-01-14 23:36:00.348390388 +0100
++++ gmsh-4.1.0-source-new/CMakeLists.txt	2019-01-14 23:36:00.350390392 +0100
 @@ -43,7 +43,7 @@ opt(BUILD_ANDROID "Enable Android NDK li
  opt(BUILD_IOS "Enable iOS library target (experimental)" OFF)
- opt(CGNS "Enable CGNS mesh import" ${DEFAULT})
+ opt(CGNS "Enable CGNS mesh import (experimental)" ${DEFAULT})
  opt(CAIRO "Enable Cairo to render fonts (experimental)" ${DEFAULT})
--opt(CXX11 "Enable C++11" ${DEFAULT})
-+opt(CXX14 "Enable C++14" ${DEFAULT})
- opt(C99 "Enable C99" ${DEFAULT})
+-opt(CXX11 "Enable C++11" ON)
++opt(CXX14 "Enable C++14" ON)
+ opt(C99 "Enable C99" ON)
  opt(PROFILE "Enable profiling compiler flags" OFF)
  opt(DINTEGRATION "Enable discrete integration (needed for levelsets)" ${DEFAULT})
 @@ -291,13 +291,13 @@ if(ENABLE_OPENMP)
@@ -31,7 +31,7 @@ diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
  
  if(ENABLE_C99)
    # in recent cmake versions we could do e.g. set(CMAKE_C_STANDARD 99)
-@@ -1455,10 +1455,10 @@ if(ENABLE_REVOROPT)
+@@ -1469,10 +1469,10 @@ if(ENABLE_REVOROPT)
      get_source_file_property(PROP Plugin/CVTRemesh.cpp COMPILE_FLAGS)
      if(PROP)
        set_source_files_properties(Plugin/CVTRemesh.cpp PROPERTIES
@@ -44,7 +44,7 @@ diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
      endif()
    else()
      message(WARNING "Revoropt requires Eigen3, Mesh, Plugins, Ann and BFGS")
-@@ -1632,7 +1632,7 @@ if(ENABLE_BUILD_ANDROID)
+@@ -1646,7 +1646,7 @@ if(ENABLE_BUILD_ANDROID)
      message(FATAL_ERROR "Cannot compile Gmsh for android without android-cmake")
    endif()
    add_definitions(-D_GLIBCXX_USE_C99_MATH=1)
diff --git a/gmsh_install.patch b/gmsh_install.patch
index 7e1ba60..b91fa00 100644
--- a/gmsh_install.patch
+++ b/gmsh_install.patch
@@ -1,7 +1,7 @@
-diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
---- gmsh-4.0.7-source/CMakeLists.txt	2018-12-10 16:42:03.335727898 +0100
-+++ gmsh-4.0.7-source-new/CMakeLists.txt	2018-12-10 16:42:03.337727896 +0100
-@@ -1778,7 +1778,7 @@ endif()
+diff -rupN gmsh-4.1.0-source/CMakeLists.txt gmsh-4.1.0-source-new/CMakeLists.txt
+--- gmsh-4.1.0-source/CMakeLists.txt	2019-01-14 23:36:00.949391446 +0100
++++ gmsh-4.1.0-source-new/CMakeLists.txt	2019-01-14 23:36:00.951391449 +0100
+@@ -1792,7 +1792,7 @@ endif()
  if(ENABLE_BUILD_SHARED OR ENABLE_BUILD_DYNAMIC)
    install(TARGETS shared DESTINATION ${GMSH_LIB} OPTIONAL)
    # FIXME once we cleanup the installation of the python module
diff --git a/gmsh_julia.patch b/gmsh_julia.patch
index 8e4c372..be1bd56 100644
--- a/gmsh_julia.patch
+++ b/gmsh_julia.patch
@@ -1,7 +1,7 @@
-diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
---- gmsh-4.0.7-source/CMakeLists.txt	2018-12-10 16:42:03.093728156 +0100
-+++ gmsh-4.0.7-source-new/CMakeLists.txt	2018-12-10 16:42:03.218728023 +0100
-@@ -1787,7 +1787,7 @@ endif()
+diff -rupN gmsh-4.1.0-source/CMakeLists.txt gmsh-4.1.0-source-new/CMakeLists.txt
+--- gmsh-4.1.0-source/CMakeLists.txt	2019-01-14 23:36:00.651390922 +0100
++++ gmsh-4.1.0-source-new/CMakeLists.txt	2019-01-14 23:36:00.805391193 +0100
+@@ -1801,7 +1801,7 @@ endif()
  if(ENABLE_BUILD_LIB OR ENABLE_BUILD_SHARED OR ENABLE_BUILD_DYNAMIC)
    install(FILES ${GMSH_API} DESTINATION ${GMSH_INC})
    install(FILES ${GMSH_PY} DESTINATION ${PYTHON3_SITE_PACKAGES})
diff --git a/gmsh_med.patch b/gmsh_med.patch
index f11b70a..c669d5e 100644
--- a/gmsh_med.patch
+++ b/gmsh_med.patch
@@ -1,7 +1,7 @@
-diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
---- gmsh-4.0.7-source/CMakeLists.txt	2018-12-10 16:42:02.976728281 +0100
-+++ gmsh-4.0.7-source-new/CMakeLists.txt	2018-12-10 16:42:02.978728279 +0100
-@@ -918,7 +918,7 @@ if(ENABLE_MED OR ENABLE_CGNS)
+diff -rupN gmsh-4.1.0-source/CMakeLists.txt gmsh-4.1.0-source-new/CMakeLists.txt
+--- gmsh-4.1.0-source/CMakeLists.txt	2019-01-14 23:36:00.505390665 +0100
++++ gmsh-4.1.0-source-new/CMakeLists.txt	2019-01-14 23:36:00.508390670 +0100
+@@ -932,7 +932,7 @@ if(ENABLE_MED OR ENABLE_CGNS)
      set(HDF5_LIB "${HDF5_C_LIBRARIES}")
      list(APPEND EXTERNAL_INCLUDES ${HDF5_INCLUDE_DIRS})
      if(ENABLE_MED)
@@ -10,9 +10,9 @@ diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
        if(MED_LIB)
          set_config_option(HAVE_MED "Med")
          list(APPEND EXTERNAL_LIBRARIES ${MED_LIB})
-diff -rupN gmsh-4.0.7-source/Common/CommandLine.cpp gmsh-4.0.7-source-new/Common/CommandLine.cpp
---- gmsh-4.0.7-source/Common/CommandLine.cpp	2018-10-21 12:15:16.000000000 +0200
-+++ gmsh-4.0.7-source-new/Common/CommandLine.cpp	2018-12-10 16:42:02.978728279 +0100
+diff -rupN gmsh-4.1.0-source/Common/CommandLine.cpp gmsh-4.1.0-source-new/Common/CommandLine.cpp
+--- gmsh-4.1.0-source/Common/CommandLine.cpp	2018-12-29 15:02:14.000000000 +0100
++++ gmsh-4.1.0-source-new/Common/CommandLine.cpp	2019-01-14 23:36:00.508390670 +0100
 @@ -40,7 +40,7 @@
  #endif
  
@@ -22,9 +22,9 @@ diff -rupN gmsh-4.0.7-source/Common/CommandLine.cpp gmsh-4.0.7-source-new/Common
  #endif
  
  #if defined(HAVE_POST)
-diff -rupN gmsh-4.0.7-source/Fltk/helpWindow.cpp gmsh-4.0.7-source-new/Fltk/helpWindow.cpp
---- gmsh-4.0.7-source/Fltk/helpWindow.cpp	2018-10-21 12:15:16.000000000 +0200
-+++ gmsh-4.0.7-source-new/Fltk/helpWindow.cpp	2018-12-10 16:42:02.978728279 +0100
+diff -rupN gmsh-4.1.0-source/Fltk/helpWindow.cpp gmsh-4.1.0-source-new/Fltk/helpWindow.cpp
+--- gmsh-4.1.0-source/Fltk/helpWindow.cpp	2018-12-29 15:02:14.000000000 +0100
++++ gmsh-4.1.0-source-new/Fltk/helpWindow.cpp	2019-01-14 23:36:00.508390670 +0100
 @@ -34,7 +34,7 @@
  #endif
  
@@ -34,9 +34,9 @@ diff -rupN gmsh-4.0.7-source/Fltk/helpWindow.cpp gmsh-4.0.7-source-new/Fltk/help
  #endif
  
  static const char *help_link(Fl_Widget *w, const char *uri)
-diff -rupN gmsh-4.0.7-source/Geo/GModelIO_MED.cpp gmsh-4.0.7-source-new/Geo/GModelIO_MED.cpp
---- gmsh-4.0.7-source/Geo/GModelIO_MED.cpp	2018-10-21 12:15:16.000000000 +0200
-+++ gmsh-4.0.7-source-new/Geo/GModelIO_MED.cpp	2018-12-10 16:42:02.979728278 +0100
+diff -rupN gmsh-4.1.0-source/Geo/GModelIO_MED.cpp gmsh-4.1.0-source-new/Geo/GModelIO_MED.cpp
+--- gmsh-4.1.0-source/Geo/GModelIO_MED.cpp	2018-12-29 15:02:14.000000000 +0100
++++ gmsh-4.1.0-source-new/Geo/GModelIO_MED.cpp	2019-01-14 23:36:00.509390672 +0100
 @@ -27,7 +27,7 @@
  #include "Context.h"
  
@@ -45,10 +45,10 @@ diff -rupN gmsh-4.0.7-source/Geo/GModelIO_MED.cpp gmsh-4.0.7-source-new/Geo/GMod
 +#include <med/med.h>
  }
  
- #if(MED_MAJOR_NUM == 3)
-diff -rupN gmsh-4.0.7-source/Post/PViewDataGModelIO.cpp gmsh-4.0.7-source-new/Post/PViewDataGModelIO.cpp
---- gmsh-4.0.7-source/Post/PViewDataGModelIO.cpp	2018-12-08 11:33:53.000000000 +0100
-+++ gmsh-4.0.7-source-new/Post/PViewDataGModelIO.cpp	2018-12-10 16:42:02.979728278 +0100
+ #if(MED_MAJOR_NUM >= 3)
+diff -rupN gmsh-4.1.0-source/Post/PViewDataGModelIO.cpp gmsh-4.1.0-source-new/Post/PViewDataGModelIO.cpp
+--- gmsh-4.1.0-source/Post/PViewDataGModelIO.cpp	2018-12-29 15:02:14.000000000 +0100
++++ gmsh-4.1.0-source-new/Post/PViewDataGModelIO.cpp	2019-01-14 23:36:00.509390672 +0100
 @@ -470,7 +470,7 @@ void PViewDataGModel::importLists(int N[
  #if defined(HAVE_MED)
  
@@ -57,4 +57,4 @@ diff -rupN gmsh-4.0.7-source/Post/PViewDataGModelIO.cpp gmsh-4.0.7-source-new/Po
 +#include <med/med.h>
  }
  
- #if(MED_MAJOR_NUM == 3)
+ #if(MED_MAJOR_NUM >= 3)
diff --git a/gmsh_python.patch b/gmsh_python.patch
index d2cc715..5a2f8c3 100644
--- a/gmsh_python.patch
+++ b/gmsh_python.patch
@@ -1,7 +1,7 @@
-diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
---- gmsh-4.0.7-source/CMakeLists.txt	2018-12-10 16:42:02.609728674 +0100
-+++ gmsh-4.0.7-source-new/CMakeLists.txt	2018-12-10 16:42:02.743728531 +0100
-@@ -1759,6 +1759,8 @@ else()
+diff -rupN gmsh-4.1.0-source/CMakeLists.txt gmsh-4.1.0-source-new/CMakeLists.txt
+--- gmsh-4.1.0-source/CMakeLists.txt	2019-01-14 23:36:00.032389832 +0100
++++ gmsh-4.1.0-source-new/CMakeLists.txt	2019-01-14 23:36:00.201390130 +0100
+@@ -1773,6 +1773,8 @@ else()
    set(GMSH_INC ${CMAKE_INSTALL_INCLUDEDIR})
  endif()
  
@@ -10,7 +10,7 @@ diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
  # FIXME: change this once we understand rpaths
  if(APPLE)
    if(ENABLE_BUILD_DYNAMIC OR ENABLE_BUILD_SHARED)
-@@ -1780,11 +1782,11 @@ if(ENABLE_BUILD_SHARED OR ENABLE_BUILD_D
+@@ -1794,11 +1796,11 @@ if(ENABLE_BUILD_SHARED OR ENABLE_BUILD_D
  endif()
  
  if(ENABLE_ONELAB)
@@ -24,9 +24,9 @@ diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
    install(FILES ${GMSH_JL} DESTINATION ${GMSH_LIB})
    if(ENABLE_PRIVATE_API)
      install(FILES ${GMSH_PRIVATE_API} DESTINATION ${GMSH_INC}/gmsh)
-diff -rupN gmsh-4.0.7-source/Common/GmshMessage.cpp gmsh-4.0.7-source-new/Common/GmshMessage.cpp
---- gmsh-4.0.7-source/Common/GmshMessage.cpp	2018-11-21 23:22:46.000000000 +0100
-+++ gmsh-4.0.7-source-new/Common/GmshMessage.cpp	2018-12-10 16:42:02.743728531 +0100
+diff -rupN gmsh-4.1.0-source/Common/GmshMessage.cpp gmsh-4.1.0-source-new/Common/GmshMessage.cpp
+--- gmsh-4.1.0-source/Common/GmshMessage.cpp	2019-01-08 22:41:13.000000000 +0100
++++ gmsh-4.1.0-source-new/Common/GmshMessage.cpp	2019-01-14 23:36:00.202390131 +0100
 @@ -154,12 +154,6 @@ void Msg::Init(int argc, char **argv)
    if(CTX::instance()->exeFileName.empty() && argc && argv)
      CTX::instance()->exeFileName = argv[0];
diff --git a/gmsh_unbundle.patch b/gmsh_unbundle.patch
index 141fa5e..c86c9da 100644
--- a/gmsh_unbundle.patch
+++ b/gmsh_unbundle.patch
@@ -1,6 +1,6 @@
-diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
---- gmsh-4.0.7-source/CMakeLists.txt	2018-12-09 14:02:39.000000000 +0100
-+++ gmsh-4.0.7-source-new/CMakeLists.txt	2018-12-10 16:42:02.481728810 +0100
+diff -rupN gmsh-4.1.0-source/CMakeLists.txt gmsh-4.1.0-source-new/CMakeLists.txt
+--- gmsh-4.1.0-source/CMakeLists.txt	2019-01-13 10:28:07.000000000 +0100
++++ gmsh-4.1.0-source-new/CMakeLists.txt	2019-01-14 23:35:59.883389570 +0100
 @@ -128,7 +128,7 @@ if(ENABLE_PRIVATE_API)
    file(GLOB_RECURSE HEADERS Common/*.h Numeric/*.h Geo/*.h Mesh/*.h Solver/*.h
      Post/*.h Graphics/*.h contrib/kbipack/*.h contrib/DiscreteIntegration/*.h
@@ -40,7 +40,7 @@ diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
    set_config_option(HAVE_BFGS "Bfgs")
  endif()
  
-@@ -777,9 +785,17 @@ if(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/co
+@@ -791,9 +799,17 @@ if(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/co
    endif()
  endif()
  
@@ -61,7 +61,7 @@ diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
    set_config_option(HAVE_MATHEX "MathEx")
  endif()
  
-@@ -853,10 +869,23 @@ if(HAVE_MESH)
+@@ -867,10 +883,23 @@ if(HAVE_MESH)
      set_config_option(HAVE_BLOSSOM "Blossom")
    endif()
  
@@ -89,7 +89,7 @@ diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
      set_config_option(HAVE_NETGEN "Netgen")
      add_definitions(-DNO_PARALLEL_THREADS -DNOTCL)
    endif()
-@@ -868,7 +897,7 @@ if(HAVE_MESH)
+@@ -882,7 +911,7 @@ if(HAVE_MESH)
    endif()
  
    if(ENABLE_MMG3D)
@@ -98,13 +98,13 @@ diff -rupN gmsh-4.0.7-source/CMakeLists.txt gmsh-4.0.7-source-new/CMakeLists.txt
      find_path(MMG3D_INC "libmmg3d.h" PATH_SUFFIXES src include)
      if(ENABLE_SYSTEM_CONTRIB AND MMG3D_LIB AND MMG3D_INC)
        message(STATUS "Using system version of MMG3D")
-diff -rupN gmsh-4.0.7-source/Mesh/CMakeLists.txt gmsh-4.0.7-source-new/Mesh/CMakeLists.txt
---- gmsh-4.0.7-source/Mesh/CMakeLists.txt	2018-12-09 11:13:06.000000000 +0100
-+++ gmsh-4.0.7-source-new/Mesh/CMakeLists.txt	2018-12-10 16:42:02.481728810 +0100
-@@ -42,6 +42,7 @@ set(SRC
-   yamakawa.cpp
+diff -rupN gmsh-4.1.0-source/Mesh/CMakeLists.txt gmsh-4.1.0-source-new/Mesh/CMakeLists.txt
+--- gmsh-4.1.0-source/Mesh/CMakeLists.txt	2018-12-29 19:32:53.000000000 +0100
++++ gmsh-4.1.0-source-new/Mesh/CMakeLists.txt	2019-01-14 23:35:59.883389570 +0100
+@@ -30,6 +30,7 @@ set(SRC
+   DivideAndConquer.cpp
    Field.cpp
-   surfaceFiller.cpp
+   filterElements.cpp
 +  nglib_gmsh.cpp
  )
  
diff --git a/sources b/sources
index a9874a8..dd3566b 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-SHA512 (gmsh-4.0.7-source-fedora.tar.xz) = bf4dc953e109db73ebd0f5d543a55b6bae692c15774d75d259cd24d767d47c2b95a837d9203d007a43b4829d299797abcc05b450ec810345173206975bd78323
+SHA512 (gmsh-4.1.0-source-fedora.tar.xz) = 3816205f66ad541b5fee545f901c3601eb90c51fe485c13e014826c7d87beb3666eb6d3646a4feeda8528ab7cec0a45d7b1bf968bad4954ba489a49549bbf0ed