diff --git a/.gitignore b/.gitignore deleted file mode 100644 index b4f710e..0000000 --- a/.gitignore +++ /dev/null @@ -1,11 +0,0 @@ -multtest_2.4.0.tar.gz -/multtest_2.6.0.tar.gz -/multtest_2.8.0.tar.gz -/multtest_2.10.0.tar.gz -/multtest_2.12.0.tar.gz -/multtest_2.14.0.tar.gz -/multtest_2.16.0.tar.gz -/multtest_2.18.0.tar.gz -/multtest_2.20.0.tar.gz -/multtest_2.32.0.tar.gz -/multtest_2.36.0.tar.gz diff --git a/R-multtest.spec b/R-multtest.spec deleted file mode 100644 index 57159af..0000000 --- a/R-multtest.spec +++ /dev/null @@ -1,225 +0,0 @@ -%global packname multtest -%global Rversion 3.4.0 - -Name: R-%{packname} -Version: 2.36.0 -Release: 5%{dist} -Summary: Multiple hypothesis testing library from Bioconductor -Summary(fr): Bibliothe que R de test multi-hypothèses - -License: LGPLv2+ -URL: http://www.bioconductor.org/packages/release/bioc/html/multtest.html -Source0: http://www.bioconductor.org/packages/release/bioc/src/contrib/%{packname}_%{version}.tar.gz - -BuildRequires: R-devel >= %{Rversion} tex(latex) R-methods R-BiocGenerics R-Biobase R-survival R-MASS R-stats4 - -%description -Non-parametric bootstrap and permutation resampling-based multiple testing -procedures for controlling the family-wise error rate (FWER), generalized -family-wise error rate (gFWER), tail probability of the proportion of -false positives (TPPFP), and false discovery rate (FDR). Single-step and -step-wise methods are implemented. Tests based on a variety of t- and -F-statistics (including t-statistics based on regression parameters from -linear and survival models) are included. Results are reported in terms -of adjusted p-values, confindence regions and test statistic cutoffs. -The procedures are directly applicable to identifying differentially -expressed genes in DNA microarray experiments. - -This Library is a part of the Bioconductor (bioconductor.org) proejct. - -%prep -%setup -c -q -n %{packname} - -%build - -%install -chmod -x %{packname}/src/*.c -chmod -x %{packname}/DESCRIPTION - - -mkdir -p %{buildroot}%{_libdir}/R/library -R CMD INSTALL %{packname} -l %{buildroot}%{_libdir}/R/library - -# Clean up in advance of check -test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so) -%{__rm} -rf %{buildroot}%{_libdir}/R/library/R.css - -chmod -x %{buildroot}%{_libdir}/R/library/%{packname}/otherDocs/*Rnw - -%check -# Leads to a FTBFS -# TODO: package the needed dependency to fix this -#%{_bindir}/R CMD check %{packname} - -%files -%dir %{_libdir}/R/library/%{packname} -%doc %{_libdir}/R/library/%{packname}/DESCRIPTION -%doc %{_libdir}/R/library/%{packname}/html -%doc %{_libdir}/R/library/%{packname}/CITATION -%{_libdir}/R/library/%{packname}/INDEX -%{_libdir}/R/library/%{packname}/Meta/ -%{_libdir}/R/library/%{packname}/R/ -%{_libdir}/R/library/%{packname}/help/ -%{_libdir}/R/library/%{packname}/libs/ -%{_libdir}/R/library/%{packname}/NAMESPACE -%{_libdir}/R/library/%{packname}/data -%{_libdir}/R/library/%{packname}/otherDocs - -%changelog -* Mon Aug 12 2019 Elliott Sales de Andrade - 2.36.0-5 -- Remove explicit dependencies provided by automatic dependency generator - -* Wed Jul 24 2019 Fedora Release Engineering - 2.36.0-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_31_Mass_Rebuild - -* Thu Jan 31 2019 Fedora Release Engineering - 2.36.0-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_30_Mass_Rebuild - -* Thu Jul 12 2018 Fedora Release Engineering - 2.36.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_29_Mass_Rebuild - -* Fri May 18 2018 Tom Callaway - 2.36.0-1 -- update to 2.36.0 - -* Wed Feb 07 2018 Fedora Release Engineering - 2.32.0-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_28_Mass_Rebuild - -* Wed Aug 02 2017 Fedora Release Engineering - 2.32.0-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild - -* Wed Jul 26 2017 Fedora Release Engineering - 2.32.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild - -* Wed May 31 2017 Tom Callaway - 2.32.0-1 -- update to 2.32.0 - -* Fri Feb 10 2017 Fedora Release Engineering - 2.20.0-5 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_26_Mass_Rebuild - -* Wed Feb 03 2016 Fedora Release Engineering - 2.20.0-4 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_24_Mass_Rebuild - -* Tue Jun 16 2015 Fedora Release Engineering - 2.20.0-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_23_Mass_Rebuild - -* Fri Aug 15 2014 Fedora Release Engineering - 2.20.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_22_Mass_Rebuild - -* Wed Jul 02 2014 pingou 2.20.0-1 -- Update to version 2.20.0 - -* Fri Jun 06 2014 Fedora Release Engineering - 2.18.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_21_Mass_Rebuild - -* Mon Jan 27 2014 pingou 2.18.0-1 -- Update to version 2.18.0 - -* Fri Aug 02 2013 Fedora Release Engineering - 2.16.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild - -* Sun Apr 07 2013 pingou 2.16.0-1 -- Update to version 2.16.0 - -* Wed Feb 13 2013 Fedora Release Engineering - 2.14.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_19_Mass_Rebuild - -* Tue Nov 27 2012 pingou 2.14.0-1 -- Update to version 2.14.0 - -* Wed Jul 18 2012 Fedora Release Engineering - 2.12.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_18_Mass_Rebuild - -* Thu Apr 26 2012 pingou 2.12.0-1 -- Update to version 2.12.0 - -* Thu Jan 12 2012 Fedora Release Engineering - 2.10.0-3 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_17_Mass_Rebuild - -* Wed Nov 9 2011 Tom Callaway 2.10.0-2 -- rebuild for R 2.14.0 - -* Thu Nov 03 2011 pingou 2.10.0-1 -- Update to version 2.10.0 - -* Wed Jun 22 2011 pingou 2.8.0-1 -- Update to version 2.8.0 - -* Thu Feb 10 2011 pingou 2.6.0-3 -- Remove the check section to test build - -* Mon Feb 07 2011 Fedora Release Engineering - 2.6.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_15_Mass_Rebuild - -* Sat Jan 29 2011 pingou 2.6.0-1 -- Update to version 2.6.0 - -* Tue May 11 2010 pingou 2.4.0-1 -- Update to version 2.4.0 -- Fix url to a more stable form -- Fix R on R-core -- Remove R on post/postun - -* Sat Nov 21 2009 pingou 2.2.0-1 -- Update to 2.2.0 -- Remove %%post and %%postun -- Adapt %%files to R-2.10.0 -- Fix BR tex(latex) - -* Fri Jul 24 2009 Fedora Release Engineering - 2.0.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild - -* Tue Apr 28 2009 pingou 2.0.0-1 -- Update to Bioconductor 2.4 and R-2.9.0 -- Use global instead of define - -* Mon Feb 23 2009 Fedora Release Engineering - 1.22.0-2 -- Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild - -* Mon Oct 27 2008 pingou 1.22.0-1 -- New version 1.22.0 for R >= 2.8.0 - -* Tue Jun 25 2008 pingou 1.20.0-3 -- change the url - -* Tue May 27 2008 pingou 1.20.0-2 -- Rebuild - -* Mon May 26 2008 pingou 1.20.0-1 -- Update to version 1.20.0 - -* Tue Feb 19 2008 Fedora Release Engineering - 1.18.0-4 -- Autorebuild for GCC 4.3 - -* Mon Jan 07 2008 Pingou 1.18.0-3 -- Change on the BR and the description - -* Mon Jan 07 2008 Pingou 1.18.0-2 -- Correct error on the URL - -* Tue Dec 04 2007 Pingou 1.18.0-1 -- Update to bioconductor 2.1 - -* Wed Aug 29 2007 Pingou 1.16.1-1 -- Update to 1.16.1 - -* Wed Aug 29 2007 Pingou 1.14.0-6 -- Change the license tag - -* Fri Jul 13 2007 Pingou 1.14.0-5 -- Change in the R and BR section to fit the guidelines - -* Tue Jul 10 2007 Pingou 1.14.0-4 -- Change in post and postun to fit the packaging guidelines -- Change in the prep section to fir the guidelines - -* Mon Jun 24 2007 Pingou 1.14.0-3 -- Change de %%doc to avoid redundancy - -*Wed May 23 2007 Pingou 1.14.0-2 -- Add the %%check section - -*Thu May 17 2007 Pingou 1.14.0-1 -- Submitting to Fedora Extras - -*Wed Apr 29 2007 Pingou 1.14.0-0.1 --Build of the rpm diff --git a/dead.package b/dead.package new file mode 100644 index 0000000..5204a84 --- /dev/null +++ b/dead.package @@ -0,0 +1 @@ +Orphaned for 6+ weeks diff --git a/sources b/sources deleted file mode 100644 index 6a78dbc..0000000 --- a/sources +++ /dev/null @@ -1 +0,0 @@ -SHA512 (multtest_2.36.0.tar.gz) = fab1a42c6a9b30fac5139a36934453583c446b5555a92779bfbf246733a37ac90ff64eae1a864c42eef2f216b6c953e51c0a84573f88a3efbbd0116b5b193b5b