diff -up EMBOSS-6.3.1/aclocal.m4.system-plplot EMBOSS-6.3.1/aclocal.m4 --- EMBOSS-6.3.1/aclocal.m4.system-plplot 2010-07-19 07:55:32.000000000 -0400 +++ EMBOSS-6.3.1/aclocal.m4 2010-08-03 08:01:37.975129562 -0400 @@ -8904,6 +8904,7 @@ m4_include([m4/hpdf.m4]) m4_include([m4/java.m4]) m4_include([m4/lf_x11.m4]) m4_include([m4/mysql.m4]) +m4_include([m4/plplot.m4]) m4_include([m4/pngdriver.m4]) m4_include([m4/postgresql.m4]) m4_include([m4/sgi.m4]) diff -up EMBOSS-6.3.1/ajax/acd/Makefile.am.system-plplot EMBOSS-6.3.1/ajax/acd/Makefile.am --- EMBOSS-6.3.1/ajax/acd/Makefile.am.system-plplot 2010-08-03 08:01:37.953240192 -0400 +++ EMBOSS-6.3.1/ajax/acd/Makefile.am 2010-08-03 08:01:37.976128933 -0400 @@ -13,10 +13,10 @@ CYGWIN_LDACD = -L../../plplot -L../pcre endif if !ESYSTEMLIBS -EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre +EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot endif -INCLUDES = -I$(top_srcdir)/plplot \ +INCLUDES = $(PLPLOT_CFLAGS) \ $(EXTRA_INCLUDES) \ -I$(top_srcdir)/ajax/core \ -I$(top_srcdir)/ajax/graphics \ diff -up EMBOSS-6.3.1/ajax/acd/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/acd/Makefile.in --- EMBOSS-6.3.1/ajax/acd/Makefile.in.system-plplot 2010-08-03 08:01:37.953240192 -0400 +++ EMBOSS-6.3.1/ajax/acd/Makefile.in 2010-08-03 08:01:37.976128933 -0400 @@ -42,9 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ - $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ - $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ - $(top_srcdir)/configure.in + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ + $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ + $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -174,6 +174,8 @@ PCRE_MINOR = @PCRE_MINOR@ PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ PCRE_VERSION = @PCRE_VERSION@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ @@ -256,8 +258,8 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL @ISCYGWIN_TRUE@-L../graphics -L../ensembl -L../ajaxdb -lajaxdb -lensembl -lajaxg -lajax \ @ISCYGWIN_TRUE@-leplplot -leexpat -lepcre -lezlib -@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -INCLUDES = -I$(top_srcdir)/plplot \ +@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot +INCLUDES = $(PLPLOT_CFLAGS) \ $(EXTRA_INCLUDES) \ -I$(top_srcdir)/ajax/core \ -I$(top_srcdir)/ajax/graphics \ diff -up EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am.system-plplot EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am --- EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am.system-plplot 2010-08-03 08:01:37.953240192 -0400 +++ EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am 2010-08-03 08:01:37.977129283 -0400 @@ -13,11 +13,11 @@ CYGWIN_LDAJAXDB = -L../../plplot -L../pc endif if !ESYSTEMLIBS -EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre +EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot endif -INCLUDES = -I$(top_srcdir)/plplot \ +INCLUDES = $(PLPLOT_CFLAGS) \ $(EXTRA_INCLUDES) \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl diff -up EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in --- EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in.system-plplot 2010-08-03 08:01:37.954253392 -0400 +++ EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in 2010-08-03 08:01:37.977129283 -0400 @@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ - $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ + $(top_srcdir)/m4/pngdriver.m4 \ $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ @@ -174,6 +175,8 @@ PCRE_MINOR = @PCRE_MINOR@ PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ PCRE_VERSION = @PCRE_VERSION@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ @@ -255,8 +258,8 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL @ISCYGWIN_TRUE@CYGWIN_LDAJAXDB = -L../../plplot -L../pcre -L../expat -L../zlib -L../core \ @ISCYGWIN_TRUE@-L../ensembl -lensembl lajax -leplplot -leexpat -lepcre -lezlib -@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -INCLUDES = -I$(top_srcdir)/plplot \ +@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot +INCLUDES = $(PLPLOT_CFLAGS) \ $(EXTRA_INCLUDES) \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl diff -up EMBOSS-6.3.1/ajax/core/Makefile.am.system-plplot EMBOSS-6.3.1/ajax/core/Makefile.am --- EMBOSS-6.3.1/ajax/core/Makefile.am.system-plplot 2010-08-03 08:01:37.954253392 -0400 +++ EMBOSS-6.3.1/ajax/core/Makefile.am 2010-08-03 08:01:37.978128794 -0400 @@ -12,13 +12,13 @@ CYGWIN_LDAJAX = -L../../plplot -L../expa endif if !ESYSTEMLIBS -EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre +EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot endif INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \ -DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \ --I$(top_srcdir)/plplot $(EXTRA_INCLUDES) +$(PLPLOT_CFLAGS) $(EXTRA_INCLUDES) AJAXSRC = ajalign.c ajarr.c ajassert.c \ ajbase.c ajcall.c ajcod.c \ diff -up EMBOSS-6.3.1/ajax/core/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/core/Makefile.in --- EMBOSS-6.3.1/ajax/core/Makefile.in.system-plplot 2010-08-03 08:01:37.955251716 -0400 +++ EMBOSS-6.3.1/ajax/core/Makefile.in 2010-08-03 08:01:37.978128794 -0400 @@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ - $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ + $(top_srcdir)/m4/pngdriver.m4 \ $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ @@ -183,6 +184,8 @@ PCRE_MINOR = @PCRE_MINOR@ PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ PCRE_VERSION = @PCRE_VERSION@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ @@ -264,10 +267,10 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL @ISCYGWIN_TRUE@CYGWIN_LDAJAX = -L../../plplot -L../expat -L../pcre -L../zlib \ @ISCYGWIN_TRUE@-leplplot -leexpat -lepcre -lezlib -@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre +@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \ -DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \ --I$(top_srcdir)/plplot $(EXTRA_INCLUDES) +$(PLPLOT_CFLAGS) $(EXTRA_INCLUDES) AJAXSRC = ajalign.c ajarr.c ajassert.c \ ajbase.c ajcall.c ajcod.c \ diff -up EMBOSS-6.3.1/ajax/ensembl/Makefile.am.system-plplot EMBOSS-6.3.1/ajax/ensembl/Makefile.am --- EMBOSS-6.3.1/ajax/ensembl/Makefile.am.system-plplot 2010-08-03 08:01:37.955251716 -0400 +++ EMBOSS-6.3.1/ajax/ensembl/Makefile.am 2010-08-03 08:01:37.978128794 -0400 @@ -10,11 +10,11 @@ CYGWIN_LDENSEMBL = -L../../plplot -L../e endif if !ESYSTEMLIBS -EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre +EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot endif -INCLUDES = -I$(top_srcdir)/plplot $(EXTRA_INCLUDES) \ +INCLUDES = $(PLPLOT_CFLAGS) $(EXTRA_INCLUDES) \ -I$(top_srcdir)/ajax/core ENSEMBLSRC = ensanalysis.c ensassembly.c ensassemblyexception.c \ diff -up EMBOSS-6.3.1/ajax/ensembl/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/ensembl/Makefile.in --- EMBOSS-6.3.1/ajax/ensembl/Makefile.in.system-plplot 2010-08-03 08:01:37.956253741 -0400 +++ EMBOSS-6.3.1/ajax/ensembl/Makefile.in 2010-08-03 08:01:37.979128584 -0400 @@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ - $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ + $(top_srcdir)/m4/pngdriver.m4 \ $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ @@ -187,6 +188,8 @@ PCRE_MINOR = @PCRE_MINOR@ PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ PCRE_VERSION = @PCRE_VERSION@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ @@ -264,8 +267,8 @@ lib_LTLIBRARIES = libensembl.la AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFLAGS) @ISCYGWIN_TRUE@CYGWIN_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import @ISCYGWIN_TRUE@CYGWIN_LDENSEMBL = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre -@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre -INCLUDES = -I$(top_srcdir)/plplot $(EXTRA_INCLUDES) \ +@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot +INCLUDES = $(PLPLOT_CFLAGS) $(EXTRA_INCLUDES) \ -I$(top_srcdir)/ajax/core ENSEMBLSRC = ensanalysis.c ensassembly.c ensassemblyexception.c \ diff -up EMBOSS-6.3.1/ajax/expat/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/expat/Makefile.in --- EMBOSS-6.3.1/ajax/expat/Makefile.in.system-plplot 2010-07-19 07:55:40.000000000 -0400 +++ EMBOSS-6.3.1/ajax/expat/Makefile.in 2010-08-03 08:01:37.979128584 -0400 @@ -41,7 +41,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ - $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ + $(top_srcdir)/m4/pngdriver.m4 \ $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ @@ -177,6 +178,8 @@ PCRE_MINOR = @PCRE_MINOR@ PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ PCRE_VERSION = @PCRE_VERSION@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ diff -up EMBOSS-6.3.1/ajax/graphics/ajgraph.c.system-plplot EMBOSS-6.3.1/ajax/graphics/ajgraph.c --- EMBOSS-6.3.1/ajax/graphics/ajgraph.c.system-plplot 2010-07-19 07:40:00.000000000 -0400 +++ EMBOSS-6.3.1/ajax/graphics/ajgraph.c 2010-08-03 08:01:37.982131238 -0400 @@ -35,7 +35,7 @@ #define AZ 28 -#include "plplotP.h" +#include static void GraphArray(ajuint numofpoints, @@ -1054,8 +1054,8 @@ static void GraphSetName(const AjPGraph { if(!thys->ready) { - ajDebug("=g= plxsfnam ('%S', '%s')\n", txt, ext); - plxsfnam(ajStrGetPtr(txt), ext); + ajDebug("=g= plsfnam ('%S')\n", txt); + plsfnam(ajStrGetPtr(txt)); ajStrAssignS(&graphBasename, txt); ajStrAssignC(&graphExtension, ext); if(ajStrGetCharFirst(graphExtension) == '.') diff -up EMBOSS-6.3.1/ajax/graphics/ajgraph.h.system-plplot EMBOSS-6.3.1/ajax/graphics/ajgraph.h --- EMBOSS-6.3.1/ajax/graphics/ajgraph.h.system-plplot 2010-04-14 03:39:49.000000000 -0400 +++ EMBOSS-6.3.1/ajax/graphics/ajgraph.h 2010-08-03 08:01:37.982131238 -0400 @@ -29,7 +29,7 @@ extern "C" #ifndef ajgraph_h #define ajgraph_h -#include "plplot.h" +#include #include "ajgraphstruct.h" #include "ajdefine.h" #include "ajstr.h" diff -up EMBOSS-6.3.1/ajax/graphics/Makefile.am.system-plplot EMBOSS-6.3.1/ajax/graphics/Makefile.am --- EMBOSS-6.3.1/ajax/graphics/Makefile.am.system-plplot 2010-08-03 08:01:37.956253741 -0400 +++ EMBOSS-6.3.1/ajax/graphics/Makefile.am 2010-08-03 08:01:37.982131238 -0400 @@ -10,11 +10,11 @@ CYGWIN_LDAJAXG = -L../../plplot -L../exp endif if !ESYSTEMLIBS -EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre +EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot endif -INCLUDES = -I$(top_srcdir)/plplot \ +INCLUDES = $(PLPLOT_CFLAGS) \ $(EXTRA_INCLUDES) -I$(top_srcdir)/ajax/core AJAXGSRC = ajgraph.c ajhist.c diff -up EMBOSS-6.3.1/ajax/graphics/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/graphics/Makefile.in --- EMBOSS-6.3.1/ajax/graphics/Makefile.in.system-plplot 2010-08-03 08:01:37.956253741 -0400 +++ EMBOSS-6.3.1/ajax/graphics/Makefile.in 2010-08-03 08:01:37.983130749 -0400 @@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ - $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ + $(top_srcdir)/m4/pngdriver.m4 \ $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ @@ -174,6 +175,8 @@ PCRE_MINOR = @PCRE_MINOR@ PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ PCRE_VERSION = @PCRE_VERSION@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ @@ -251,8 +254,8 @@ lib_LTLIBRARIES = libajaxg.la AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFLAGS) @ISCYGWIN_TRUE@CYGWIN_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import @ISCYGWIN_TRUE@CYGWIN_LDAJAXG = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre -@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre -INCLUDES = -I$(top_srcdir)/plplot \ +@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot +INCLUDES = $(PLPLOT_CFLAGS) \ $(EXTRA_INCLUDES) -I$(top_srcdir)/ajax/core AJAXGSRC = ajgraph.c ajhist.c diff -up EMBOSS-6.3.1/ajax/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/Makefile.in --- EMBOSS-6.3.1/ajax/Makefile.in.system-plplot 2010-08-03 08:01:37.957253392 -0400 +++ EMBOSS-6.3.1/ajax/Makefile.in 2010-08-03 08:01:37.983130749 -0400 @@ -39,7 +39,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ - $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ + $(top_srcdir)/m4/pngdriver.m4 \ $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ @@ -165,6 +166,8 @@ PCRE_MINOR = @PCRE_MINOR@ PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ PCRE_VERSION = @PCRE_VERSION@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ diff -up EMBOSS-6.3.1/configure.in.system-plplot EMBOSS-6.3.1/configure.in --- EMBOSS-6.3.1/configure.in.system-plplot 2010-08-03 08:01:37.957253392 -0400 +++ EMBOSS-6.3.1/configure.in 2010-08-03 08:01:37.983130749 -0400 @@ -288,6 +288,7 @@ CHECK_GENERAL CHECK_JAVA CHECK_JAVAOS CHECK_HPDF +CHECK_PLPLOT CHECK_PNGDRIVER CHECK_AUTH CHECK_AMD64 @@ -659,8 +660,8 @@ dnl check and set compilation flags for CHECK_THREADS -AC_OUTPUT([plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile -ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile +AC_OUTPUT([nucleus/Makefile ajax/Makefile +ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile diff -up EMBOSS-6.3.1/configure.system-plplot EMBOSS-6.3.1/configure --- EMBOSS-6.3.1/configure.system-plplot 2010-08-03 08:01:37.962261284 -0400 +++ EMBOSS-6.3.1/configure 2010-08-03 08:01:37.986131587 -0400 @@ -792,6 +792,8 @@ MYSQL_LDFLAGS MYSQL_CFLAGS MYSQL_VERSION MYSQL_CONFIG +PLPLOT_LIBS +PLPLOT_CFLAGS JAVA_OK havejavac AMPDF_FALSE @@ -13647,6 +13649,199 @@ $as_echo "no" >&6; } fi +PLPLOT_LIBS="" +OLIBS="$LIBS" +LIBS="" + +check_plplot_ok=yes +check_plplotpkg_ok=no +if test x = x && test x = x; then + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for PLPlot pkg-config info" >&5 +$as_echo_n "checking for PLPlot pkg-config info... " >&6; } + if pkg-config --exists plplotd; then + { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +$as_echo "yes" >&6; } + PLPLOT_CFLAGS=`pkg-config --cflags plplotd` + PLPLOT_LIBS=`pkg-config --libs plplotd` + +$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + check_plplotpkg_ok=yes + else + { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 +$as_echo "no" >&6; } + fi +fi +if test x$check_plplotpkg_ok = xno; then + if test x = x; then + ac_fn_c_check_header_mongrel "$LINENO" "plplot.h" "ac_cv_header_plplot_h" "$ac_includes_default" +if test "x$ac_cv_header_plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + else + ac_fn_c_check_header_mongrel "$LINENO" "plplot/plplot.h" "ac_cv_header_plplot_plplot_h" "$ac_includes_default" +if test "x$ac_cv_header_plplot_plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "#define PLPLOT_H \"plplot/plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplot/plplotP.h\"" >>confdefs.h + + else + check_plplot_ok=no + fi + fi + else + ac_fn_c_check_header_mongrel "$LINENO" "/plplot.h" "ac_cv_header__plplot_h" "$ac_includes_default" +if test "x$ac_cv_header__plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + PLPLOT_CFLAGS="-I" + else + check_plplot_ok=no + fi + fi + if test x = x; then + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 +$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } +if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lplplotd $LIBS" +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char c_plinit (); +int +main () +{ +return c_plinit (); + ; + return 0; +} +_ACEOF +if ac_fn_c_try_link "$LINENO"; then : + ac_cv_lib_plplotd_c_plinit=yes +else + ac_cv_lib_plplotd_c_plinit=no +fi +rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 +$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } +if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : + cat >>confdefs.h <<_ACEOF +#define HAVE_LIBPLPLOTD 1 +_ACEOF + + LIBS="-lplplotd $LIBS" + +else + check_plplot_ok=no +fi + + PLPLOT_LIBS="-lplplotd" + else + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 +$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } +if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lplplotd -L $LIBS" +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char c_plinit (); +int +main () +{ +return c_plinit (); + ; + return 0; +} +_ACEOF +if ac_fn_c_try_link "$LINENO"; then : + ac_cv_lib_plplotd_c_plinit=yes +else + ac_cv_lib_plplotd_c_plinit=no +fi +rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 +$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } +if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : + cat >>confdefs.h <<_ACEOF +#define HAVE_LIBPLPLOTD 1 +_ACEOF + + LIBS="-lplplotd $LIBS" + +else + check_plplot_ok=no +fi + + PLPLOT_LIBS="-L -lplplotd" + fi +fi + +LIBS="$OLIBS" +if test x$check_plplot_ok = xyes; then + + + +$as_echo "#define HAVE_PLPLOT 1" >>confdefs.h + +fi # @@ -13780,6 +13975,204 @@ fi + + + +PLPLOT_LIBS="" +OLIBS="$LIBS" +LIBS="" + +check_plplot_ok=yes +check_plplotpkg_ok=no +if test x = x && test x = x; then + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for PLPlot pkg-config info" >&5 +$as_echo_n "checking for PLPlot pkg-config info... " >&6; } + if pkg-config --exists plplotd; then + { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +$as_echo "yes" >&6; } + PLPLOT_CFLAGS=`pkg-config --cflags plplotd` + PLPLOT_LIBS=`pkg-config --libs plplotd` + +$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + check_plplotpkg_ok=yes + else + { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 +$as_echo "no" >&6; } + fi +fi +if test x$check_plplotpkg_ok = xno; then + if test x = x; then + ac_fn_c_check_header_mongrel "$LINENO" "plplot.h" "ac_cv_header_plplot_h" "$ac_includes_default" +if test "x$ac_cv_header_plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + else + ac_fn_c_check_header_mongrel "$LINENO" "plplot/plplot.h" "ac_cv_header_plplot_plplot_h" "$ac_includes_default" +if test "x$ac_cv_header_plplot_plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "#define PLPLOT_H \"plplot/plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplot/plplotP.h\"" >>confdefs.h + + else + check_plplot_ok=no + fi + fi + else + ac_fn_c_check_header_mongrel "$LINENO" "/plplot.h" "ac_cv_header__plplot_h" "$ac_includes_default" +if test "x$ac_cv_header__plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + PLPLOT_CFLAGS="-I" + else + check_plplot_ok=no + fi + fi + if test x = x; then + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 +$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } +if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lplplotd $LIBS" +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char c_plinit (); +int +main () +{ +return c_plinit (); + ; + return 0; +} +_ACEOF +if ac_fn_c_try_link "$LINENO"; then : + ac_cv_lib_plplotd_c_plinit=yes +else + ac_cv_lib_plplotd_c_plinit=no +fi +rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 +$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } +if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : + cat >>confdefs.h <<_ACEOF +#define HAVE_LIBPLPLOTD 1 +_ACEOF + + LIBS="-lplplotd $LIBS" + +else + check_plplot_ok=no +fi + + PLPLOT_LIBS="-lplplotd" + else + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 +$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } +if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lplplotd -L $LIBS" +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char c_plinit (); +int +main () +{ +return c_plinit (); + ; + return 0; +} +_ACEOF +if ac_fn_c_try_link "$LINENO"; then : + ac_cv_lib_plplotd_c_plinit=yes +else + ac_cv_lib_plplotd_c_plinit=no +fi +rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 +$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } +if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : + cat >>confdefs.h <<_ACEOF +#define HAVE_LIBPLPLOTD 1 +_ACEOF + + LIBS="-lplplotd $LIBS" + +else + check_plplot_ok=no +fi + + PLPLOT_LIBS="-L -lplplotd" + fi +fi + +LIBS="$OLIBS" +if test x$check_plplot_ok = xyes; then + + + +$as_echo "#define HAVE_PLPLOT 1" >>confdefs.h + +fi + + # # Handle user hints # @@ -15299,7 +15692,7 @@ fi -ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/JASPAR_PBM/Makefile emboss/data/JASPAR_PBM_HLH/Makefile emboss/data/JASPAR_PBM_HOMEO/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile" +ac_config_files="$ac_config_files nucleus/Makefile ajax/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/JASPAR_PBM/Makefile emboss/data/JASPAR_PBM_HLH/Makefile emboss/data/JASPAR_PBM_HOMEO/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile" cat >confcache <<\_ACEOF # This file is a shell script that caches the results of configure @@ -16353,12 +16746,8 @@ do case $ac_config_target in "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;; "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;; - "plplot/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/Makefile" ;; - "plplot/lib/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/lib/Makefile" ;; "nucleus/Makefile") CONFIG_FILES="$CONFIG_FILES nucleus/Makefile" ;; "ajax/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/Makefile" ;; - "ajax/expat/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/expat/Makefile" ;; - "ajax/zlib/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/zlib/Makefile" ;; "ajax/core/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/core/Makefile" ;; "ajax/graphics/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/graphics/Makefile" ;; "ajax/ensembl/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/ensembl/Makefile" ;; diff -up EMBOSS-6.3.1/emboss/Makefile.am.system-plplot EMBOSS-6.3.1/emboss/Makefile.am --- EMBOSS-6.3.1/emboss/Makefile.am.system-plplot 2010-08-03 08:01:37.963254649 -0400 +++ EMBOSS-6.3.1/emboss/Makefile.am 2010-08-03 08:02:04.639273502 -0400 @@ -79,14 +79,14 @@ wordcount wordfinder wordmatch wossname yank if !ESYSTEMLIBS -EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre +EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot endif INCLUDES = -I$(top_srcdir)/nucleus \ - $(EXTRA_INCLUDES) \ + $(EXTRA_INCLUDES) $(PLPLOT_CFLAGS) \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ -I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \ - -I$(top_srcdir)/ajax/acd -I$(top_srcdir)/plplot + -I$(top_srcdir)/ajax/acd aaindexextract_SOURCES = aaindexextract.c @@ -319,7 +319,7 @@ testplot_SOURCES = testplot.c treetypedisplay_SOURCES = treetypedisplay.c if !ESYSTEMLIBS -EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la +EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la endif @@ -327,7 +327,7 @@ LDADD = ../nucleus/libnucleus.la ../ajax ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ $(EXTRA_LDS) \ - ../plplot/libeplplot.la \ + $(PLPLOT_LIBS) \ $(XLIB) pkgdata_DATA = emboss.default.template diff -up EMBOSS-6.3.1/emboss/Makefile.in.system-plplot EMBOSS-6.3.1/emboss/Makefile.in --- EMBOSS-6.3.1/emboss/Makefile.in.system-plplot 2010-08-03 08:01:37.968108260 -0400 +++ EMBOSS-6.3.1/emboss/Makefile.in 2010-08-03 08:02:28.757235378 -0400 @@ -119,7 +119,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ - $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ + $(top_srcdir)/m4/pngdriver.m4 \ $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ @@ -137,14 +138,14 @@ aaindexextract_DEPENDENCIES = ../nucleus ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_abiview_OBJECTS = abiview.$(OBJEXT) abiview_OBJECTS = $(am_abiview_OBJECTS) abiview_LDADD = $(LDADD) abiview_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_acdc_OBJECTS = acdc.$(OBJEXT) acdc_OBJECTS = $(am_acdc_OBJECTS) @@ -152,7 +153,7 @@ acdc_LDADD = $(LDADD) acdc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_acdgalaxy_OBJECTS = acdgalaxy.$(OBJEXT) acdgalaxy_OBJECTS = $(am_acdgalaxy_OBJECTS) @@ -161,14 +162,14 @@ acdgalaxy_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_acdlog_OBJECTS = acdlog.$(OBJEXT) acdlog_OBJECTS = $(am_acdlog_OBJECTS) acdlog_LDADD = $(LDADD) acdlog_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_acdpretty_OBJECTS = acdpretty.$(OBJEXT) acdpretty_OBJECTS = $(am_acdpretty_OBJECTS) @@ -177,7 +178,7 @@ acdpretty_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_acdrelations_OBJECTS = acdrelations.$(OBJEXT) acdrelations_OBJECTS = $(am_acdrelations_OBJECTS) acdrelations_LDADD = $(LDADD) @@ -185,14 +186,14 @@ acdrelations_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_acdtable_OBJECTS = acdtable.$(OBJEXT) acdtable_OBJECTS = $(am_acdtable_OBJECTS) acdtable_LDADD = $(LDADD) acdtable_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_acdtrace_OBJECTS = acdtrace.$(OBJEXT) acdtrace_OBJECTS = $(am_acdtrace_OBJECTS) @@ -200,7 +201,7 @@ acdtrace_LDADD = $(LDADD) acdtrace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_acdvalid_OBJECTS = acdvalid.$(OBJEXT) acdvalid_OBJECTS = $(am_acdvalid_OBJECTS) @@ -208,7 +209,7 @@ acdvalid_LDADD = $(LDADD) acdvalid_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_acdxsd_OBJECTS = acdxsd.$(OBJEXT) acdxsd_OBJECTS = $(am_acdxsd_OBJECTS) @@ -216,7 +217,7 @@ acdxsd_LDADD = $(LDADD) acdxsd_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_ajtest_OBJECTS = ajtest.$(OBJEXT) ajtest_OBJECTS = $(am_ajtest_OBJECTS) @@ -224,7 +225,7 @@ ajtest_LDADD = $(LDADD) ajtest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_aligncopy_OBJECTS = aligncopy.$(OBJEXT) aligncopy_OBJECTS = $(am_aligncopy_OBJECTS) @@ -233,7 +234,7 @@ aligncopy_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_aligncopypair_OBJECTS = aligncopypair.$(OBJEXT) aligncopypair_OBJECTS = $(am_aligncopypair_OBJECTS) aligncopypair_LDADD = $(LDADD) @@ -241,7 +242,7 @@ aligncopypair_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_antigenic_OBJECTS = antigenic.$(OBJEXT) antigenic_OBJECTS = $(am_antigenic_OBJECTS) antigenic_LDADD = $(LDADD) @@ -249,7 +250,7 @@ antigenic_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_backtranambig_OBJECTS = backtranambig.$(OBJEXT) backtranambig_OBJECTS = $(am_backtranambig_OBJECTS) backtranambig_LDADD = $(LDADD) @@ -257,7 +258,7 @@ backtranambig_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_backtranseq_OBJECTS = backtranseq.$(OBJEXT) backtranseq_OBJECTS = $(am_backtranseq_OBJECTS) backtranseq_LDADD = $(LDADD) @@ -265,14 +266,14 @@ backtranseq_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_banana_OBJECTS = banana.$(OBJEXT) banana_OBJECTS = $(am_banana_OBJECTS) banana_LDADD = $(LDADD) banana_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_biosed_OBJECTS = biosed.$(OBJEXT) biosed_OBJECTS = $(am_biosed_OBJECTS) @@ -280,7 +281,7 @@ biosed_LDADD = $(LDADD) biosed_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_btwisted_OBJECTS = btwisted.$(OBJEXT) btwisted_OBJECTS = $(am_btwisted_OBJECTS) @@ -288,7 +289,7 @@ btwisted_LDADD = $(LDADD) btwisted_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_cai_OBJECTS = cai.$(OBJEXT) cai_OBJECTS = $(am_cai_OBJECTS) @@ -296,7 +297,7 @@ cai_LDADD = $(LDADD) cai_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_chaos_OBJECTS = chaos.$(OBJEXT) chaos_OBJECTS = $(am_chaos_OBJECTS) @@ -304,7 +305,7 @@ chaos_LDADD = $(LDADD) chaos_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_charge_OBJECTS = charge.$(OBJEXT) charge_OBJECTS = $(am_charge_OBJECTS) @@ -312,7 +313,7 @@ charge_LDADD = $(LDADD) charge_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_checktrans_OBJECTS = checktrans.$(OBJEXT) checktrans_OBJECTS = $(am_checktrans_OBJECTS) @@ -321,14 +322,14 @@ checktrans_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_chips_OBJECTS = chips.$(OBJEXT) chips_OBJECTS = $(am_chips_OBJECTS) chips_LDADD = $(LDADD) chips_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_cirdna_OBJECTS = cirdna.$(OBJEXT) cirdna_OBJECTS = $(am_cirdna_OBJECTS) @@ -336,7 +337,7 @@ cirdna_LDADD = $(LDADD) cirdna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_codcmp_OBJECTS = codcmp.$(OBJEXT) codcmp_OBJECTS = $(am_codcmp_OBJECTS) @@ -344,7 +345,7 @@ codcmp_LDADD = $(LDADD) codcmp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) codcopy_SOURCES = codcopy.c codcopy_OBJECTS = codcopy.$(OBJEXT) @@ -352,7 +353,7 @@ codcopy_LDADD = $(LDADD) codcopy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_coderet_OBJECTS = coderet.$(OBJEXT) coderet_OBJECTS = $(am_coderet_OBJECTS) @@ -360,7 +361,7 @@ coderet_LDADD = $(LDADD) coderet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_complex_OBJECTS = complex.$(OBJEXT) complex_OBJECTS = $(am_complex_OBJECTS) @@ -368,7 +369,7 @@ complex_LDADD = $(LDADD) complex_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_compseq_OBJECTS = compseq.$(OBJEXT) compseq_OBJECTS = $(am_compseq_OBJECTS) @@ -376,7 +377,7 @@ compseq_LDADD = $(LDADD) compseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_cons_OBJECTS = cons.$(OBJEXT) cons_OBJECTS = $(am_cons_OBJECTS) @@ -384,7 +385,7 @@ cons_LDADD = $(LDADD) cons_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_consambig_OBJECTS = consambig.$(OBJEXT) consambig_OBJECTS = $(am_consambig_OBJECTS) @@ -393,7 +394,7 @@ consambig_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_corbatest_OBJECTS = corbatest.$(OBJEXT) corbatest_OBJECTS = $(am_corbatest_OBJECTS) corbatest_LDADD = $(LDADD) @@ -401,14 +402,14 @@ corbatest_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_cpgplot_OBJECTS = cpgplot.$(OBJEXT) cpgplot_OBJECTS = $(am_cpgplot_OBJECTS) cpgplot_LDADD = $(LDADD) cpgplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_cpgreport_OBJECTS = cpgreport.$(OBJEXT) cpgreport_OBJECTS = $(am_cpgreport_OBJECTS) @@ -417,14 +418,14 @@ cpgreport_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_cusp_OBJECTS = cusp.$(OBJEXT) cusp_OBJECTS = $(am_cusp_OBJECTS) cusp_LDADD = $(LDADD) cusp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_cutgextract_OBJECTS = cutgextract.$(OBJEXT) cutgextract_OBJECTS = $(am_cutgextract_OBJECTS) @@ -433,14 +434,14 @@ cutgextract_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_cutseq_OBJECTS = cutseq.$(OBJEXT) cutseq_OBJECTS = $(am_cutseq_OBJECTS) cutseq_LDADD = $(LDADD) cutseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_dan_OBJECTS = dan.$(OBJEXT) dan_OBJECTS = $(am_dan_OBJECTS) @@ -448,7 +449,7 @@ dan_LDADD = $(LDADD) dan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_dbiblast_OBJECTS = dbiblast.$(OBJEXT) dbiblast_OBJECTS = $(am_dbiblast_OBJECTS) @@ -456,7 +457,7 @@ dbiblast_LDADD = $(LDADD) dbiblast_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_dbifasta_OBJECTS = dbifasta.$(OBJEXT) dbifasta_OBJECTS = $(am_dbifasta_OBJECTS) @@ -464,7 +465,7 @@ dbifasta_LDADD = $(LDADD) dbifasta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_dbiflat_OBJECTS = dbiflat.$(OBJEXT) dbiflat_OBJECTS = $(am_dbiflat_OBJECTS) @@ -472,7 +473,7 @@ dbiflat_LDADD = $(LDADD) dbiflat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_dbigcg_OBJECTS = dbigcg.$(OBJEXT) dbigcg_OBJECTS = $(am_dbigcg_OBJECTS) @@ -480,7 +481,7 @@ dbigcg_LDADD = $(LDADD) dbigcg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_dbxfasta_OBJECTS = dbxfasta.$(OBJEXT) dbxfasta_OBJECTS = $(am_dbxfasta_OBJECTS) @@ -488,7 +489,7 @@ dbxfasta_LDADD = $(LDADD) dbxfasta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_dbxflat_OBJECTS = dbxflat.$(OBJEXT) dbxflat_OBJECTS = $(am_dbxflat_OBJECTS) @@ -496,7 +497,7 @@ dbxflat_LDADD = $(LDADD) dbxflat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_dbxgcg_OBJECTS = dbxgcg.$(OBJEXT) dbxgcg_OBJECTS = $(am_dbxgcg_OBJECTS) @@ -504,7 +505,7 @@ dbxgcg_LDADD = $(LDADD) dbxgcg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_degapseq_OBJECTS = degapseq.$(OBJEXT) degapseq_OBJECTS = $(am_degapseq_OBJECTS) @@ -512,7 +513,7 @@ degapseq_LDADD = $(LDADD) degapseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_density_OBJECTS = density.$(OBJEXT) density_OBJECTS = $(am_density_OBJECTS) @@ -520,7 +521,7 @@ density_LDADD = $(LDADD) density_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_descseq_OBJECTS = descseq.$(OBJEXT) descseq_OBJECTS = $(am_descseq_OBJECTS) @@ -528,7 +529,7 @@ descseq_LDADD = $(LDADD) descseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_diffseq_OBJECTS = diffseq.$(OBJEXT) diffseq_OBJECTS = $(am_diffseq_OBJECTS) @@ -536,7 +537,7 @@ diffseq_LDADD = $(LDADD) diffseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_digest_OBJECTS = digest.$(OBJEXT) digest_OBJECTS = $(am_digest_OBJECTS) @@ -544,7 +545,7 @@ digest_LDADD = $(LDADD) digest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_distmat_OBJECTS = distmat.$(OBJEXT) distmat_OBJECTS = $(am_distmat_OBJECTS) @@ -552,7 +553,7 @@ distmat_LDADD = $(LDADD) distmat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) domtesta_SOURCES = domtesta.c domtesta_OBJECTS = domtesta.$(OBJEXT) @@ -560,7 +561,7 @@ domtesta_LDADD = $(LDADD) domtesta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) domtestb_SOURCES = domtestb.c domtestb_OBJECTS = domtestb.$(OBJEXT) @@ -568,7 +569,7 @@ domtestb_LDADD = $(LDADD) domtestb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) domtestc_SOURCES = domtestc.c domtestc_OBJECTS = domtestc.$(OBJEXT) @@ -576,7 +577,7 @@ domtestc_LDADD = $(LDADD) domtestc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) domtestd_SOURCES = domtestd.c domtestd_OBJECTS = domtestd.$(OBJEXT) @@ -584,7 +585,7 @@ domtestd_LDADD = $(LDADD) domtestd_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_dotmatcher_OBJECTS = dotmatcher.$(OBJEXT) dotmatcher_OBJECTS = $(am_dotmatcher_OBJECTS) @@ -593,14 +594,14 @@ dotmatcher_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_dotpath_OBJECTS = dotpath.$(OBJEXT) dotpath_OBJECTS = $(am_dotpath_OBJECTS) dotpath_LDADD = $(LDADD) dotpath_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_dottup_OBJECTS = dottup.$(OBJEXT) dottup_OBJECTS = $(am_dottup_OBJECTS) @@ -608,7 +609,7 @@ dottup_LDADD = $(LDADD) dottup_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_dreg_OBJECTS = dreg.$(OBJEXT) dreg_OBJECTS = $(am_dreg_OBJECTS) @@ -616,7 +617,7 @@ dreg_LDADD = $(LDADD) dreg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_edamclean_OBJECTS = edamclean.$(OBJEXT) edamclean_OBJECTS = $(am_edamclean_OBJECTS) @@ -625,14 +626,14 @@ edamclean_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_edialign_OBJECTS = edialign.$(OBJEXT) edialign_OBJECTS = $(am_edialign_OBJECTS) edialign_LDADD = $(LDADD) edialign_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_einverted_OBJECTS = einverted.$(OBJEXT) einverted_OBJECTS = $(am_einverted_OBJECTS) @@ -641,7 +642,7 @@ einverted_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_embossdata_OBJECTS = embossdata.$(OBJEXT) embossdata_OBJECTS = $(am_embossdata_OBJECTS) embossdata_LDADD = $(LDADD) @@ -649,7 +650,7 @@ embossdata_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_embossversion_OBJECTS = embossversion.$(OBJEXT) embossversion_OBJECTS = $(am_embossversion_OBJECTS) embossversion_LDADD = $(LDADD) @@ -657,14 +658,14 @@ embossversion_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_emma_OBJECTS = emma.$(OBJEXT) emma_OBJECTS = $(am_emma_OBJECTS) emma_LDADD = $(LDADD) emma_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_emowse_OBJECTS = emowse.$(OBJEXT) emowse_OBJECTS = $(am_emowse_OBJECTS) @@ -672,7 +673,7 @@ emowse_LDADD = $(LDADD) emowse_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_ensembltest_OBJECTS = ensembltest.$(OBJEXT) ensembltest_OBJECTS = $(am_ensembltest_OBJECTS) @@ -681,14 +682,14 @@ ensembltest_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_entrails_OBJECTS = entrails.$(OBJEXT) entrails_OBJECTS = $(am_entrails_OBJECTS) entrails_LDADD = $(LDADD) entrails_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_entrailsbook_OBJECTS = entrailsbook.$(OBJEXT) entrailsbook_OBJECTS = $(am_entrailsbook_OBJECTS) @@ -697,7 +698,7 @@ entrailsbook_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_entrailshtml_OBJECTS = entrailshtml.$(OBJEXT) entrailshtml_OBJECTS = $(am_entrailshtml_OBJECTS) entrailshtml_LDADD = $(LDADD) @@ -705,7 +706,7 @@ entrailshtml_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_entrailswiki_OBJECTS = entrailswiki.$(OBJEXT) entrailswiki_OBJECTS = $(am_entrailswiki_OBJECTS) entrailswiki_LDADD = $(LDADD) @@ -713,14 +714,14 @@ entrailswiki_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_entret_OBJECTS = entret.$(OBJEXT) entret_OBJECTS = $(am_entret_OBJECTS) entret_LDADD = $(LDADD) entret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_epestfind_OBJECTS = epestfind.$(OBJEXT) epestfind_OBJECTS = $(am_epestfind_OBJECTS) @@ -729,14 +730,14 @@ epestfind_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_eprimer3_OBJECTS = eprimer3.$(OBJEXT) eprimer3_OBJECTS = $(am_eprimer3_OBJECTS) eprimer3_LDADD = $(LDADD) eprimer3_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_equicktandem_OBJECTS = equicktandem.$(OBJEXT) equicktandem_OBJECTS = $(am_equicktandem_OBJECTS) @@ -745,7 +746,7 @@ equicktandem_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_est2genome_OBJECTS = est2genome.$(OBJEXT) est2genome_OBJECTS = $(am_est2genome_OBJECTS) est2genome_LDADD = $(LDADD) @@ -753,14 +754,14 @@ est2genome_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_etandem_OBJECTS = etandem.$(OBJEXT) etandem_OBJECTS = $(am_etandem_OBJECTS) etandem_LDADD = $(LDADD) etandem_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_extractalign_OBJECTS = extractalign.$(OBJEXT) extractalign_OBJECTS = $(am_extractalign_OBJECTS) @@ -769,7 +770,7 @@ extractalign_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_extractfeat_OBJECTS = extractfeat.$(OBJEXT) extractfeat_OBJECTS = $(am_extractfeat_OBJECTS) extractfeat_LDADD = $(LDADD) @@ -777,7 +778,7 @@ extractfeat_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_extractseq_OBJECTS = extractseq.$(OBJEXT) extractseq_OBJECTS = $(am_extractseq_OBJECTS) extractseq_LDADD = $(LDADD) @@ -785,14 +786,14 @@ extractseq_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_featcopy_OBJECTS = featcopy.$(OBJEXT) featcopy_OBJECTS = $(am_featcopy_OBJECTS) featcopy_LDADD = $(LDADD) featcopy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_featreport_OBJECTS = featreport.$(OBJEXT) featreport_OBJECTS = $(am_featreport_OBJECTS) @@ -801,14 +802,14 @@ featreport_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_findkm_OBJECTS = findkm.$(OBJEXT) findkm_OBJECTS = $(am_findkm_OBJECTS) findkm_LDADD = $(LDADD) findkm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_freak_OBJECTS = freak.$(OBJEXT) freak_OBJECTS = $(am_freak_OBJECTS) @@ -816,7 +817,7 @@ freak_LDADD = $(LDADD) freak_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_fuzznuc_OBJECTS = fuzznuc.$(OBJEXT) fuzznuc_OBJECTS = $(am_fuzznuc_OBJECTS) @@ -824,7 +825,7 @@ fuzznuc_LDADD = $(LDADD) fuzznuc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_fuzzpro_OBJECTS = fuzzpro.$(OBJEXT) fuzzpro_OBJECTS = $(am_fuzzpro_OBJECTS) @@ -832,7 +833,7 @@ fuzzpro_LDADD = $(LDADD) fuzzpro_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_fuzztran_OBJECTS = fuzztran.$(OBJEXT) fuzztran_OBJECTS = $(am_fuzztran_OBJECTS) @@ -840,7 +841,7 @@ fuzztran_LDADD = $(LDADD) fuzztran_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_garnier_OBJECTS = garnier.$(OBJEXT) garnier_OBJECTS = $(am_garnier_OBJECTS) @@ -848,7 +849,7 @@ garnier_LDADD = $(LDADD) garnier_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_geecee_OBJECTS = geecee.$(OBJEXT) geecee_OBJECTS = $(am_geecee_OBJECTS) @@ -856,7 +857,7 @@ geecee_LDADD = $(LDADD) geecee_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_getorf_OBJECTS = getorf.$(OBJEXT) getorf_OBJECTS = $(am_getorf_OBJECTS) @@ -864,7 +865,7 @@ getorf_LDADD = $(LDADD) getorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_helixturnhelix_OBJECTS = helixturnhelix.$(OBJEXT) helixturnhelix_OBJECTS = $(am_helixturnhelix_OBJECTS) @@ -873,7 +874,7 @@ helixturnhelix_DEPENDENCIES = ../nucleus ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_histogramtest_OBJECTS = histogramtest.$(OBJEXT) histogramtest_OBJECTS = $(am_histogramtest_OBJECTS) histogramtest_LDADD = $(LDADD) @@ -881,14 +882,14 @@ histogramtest_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_hmoment_OBJECTS = hmoment.$(OBJEXT) hmoment_OBJECTS = $(am_hmoment_OBJECTS) hmoment_LDADD = $(LDADD) hmoment_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_iep_OBJECTS = iep.$(OBJEXT) iep_OBJECTS = $(am_iep_OBJECTS) @@ -896,7 +897,7 @@ iep_LDADD = $(LDADD) iep_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_infoalign_OBJECTS = infoalign.$(OBJEXT) infoalign_OBJECTS = $(am_infoalign_OBJECTS) @@ -905,14 +906,14 @@ infoalign_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_infobase_OBJECTS = infobase.$(OBJEXT) infobase_OBJECTS = $(am_infobase_OBJECTS) infobase_LDADD = $(LDADD) infobase_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_inforesidue_OBJECTS = inforesidue.$(OBJEXT) inforesidue_OBJECTS = $(am_inforesidue_OBJECTS) @@ -921,14 +922,14 @@ inforesidue_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_infoseq_OBJECTS = infoseq.$(OBJEXT) infoseq_OBJECTS = $(am_infoseq_OBJECTS) infoseq_LDADD = $(LDADD) infoseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_intconv_OBJECTS = intconv.$(OBJEXT) intconv_OBJECTS = $(am_intconv_OBJECTS) @@ -936,7 +937,7 @@ intconv_LDADD = $(LDADD) intconv_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_isochore_OBJECTS = isochore.$(OBJEXT) isochore_OBJECTS = $(am_isochore_OBJECTS) @@ -944,7 +945,7 @@ isochore_LDADD = $(LDADD) isochore_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_jaspextract_OBJECTS = jaspextract.$(OBJEXT) jaspextract_OBJECTS = $(am_jaspextract_OBJECTS) @@ -953,14 +954,14 @@ jaspextract_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_jaspscan_OBJECTS = jaspscan.$(OBJEXT) jaspscan_OBJECTS = $(am_jaspscan_OBJECTS) jaspscan_LDADD = $(LDADD) jaspscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_jembossctl_OBJECTS = jembossctl.$(OBJEXT) jembossctl_OBJECTS = $(am_jembossctl_OBJECTS) @@ -969,14 +970,14 @@ jembossctl_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_lindna_OBJECTS = lindna.$(OBJEXT) lindna_OBJECTS = $(am_lindna_OBJECTS) lindna_LDADD = $(LDADD) lindna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_listor_OBJECTS = listor.$(OBJEXT) listor_OBJECTS = $(am_listor_OBJECTS) @@ -984,7 +985,7 @@ listor_LDADD = $(LDADD) listor_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) makenucseq_SOURCES = makenucseq.c makenucseq_OBJECTS = makenucseq.$(OBJEXT) @@ -993,7 +994,7 @@ makenucseq_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) makeprotseq_SOURCES = makeprotseq.c makeprotseq_OBJECTS = makeprotseq.$(OBJEXT) makeprotseq_LDADD = $(LDADD) @@ -1001,14 +1002,14 @@ makeprotseq_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_marscan_OBJECTS = marscan.$(OBJEXT) marscan_OBJECTS = $(am_marscan_OBJECTS) marscan_LDADD = $(LDADD) marscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_martattributes_OBJECTS = martattributes.$(OBJEXT) martattributes_OBJECTS = $(am_martattributes_OBJECTS) @@ -1017,7 +1018,7 @@ martattributes_DEPENDENCIES = ../nucleus ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_martdatasets_OBJECTS = martdatasets.$(OBJEXT) martdatasets_OBJECTS = $(am_martdatasets_OBJECTS) martdatasets_LDADD = $(LDADD) @@ -1025,7 +1026,7 @@ martdatasets_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_martfilters_OBJECTS = martfilters.$(OBJEXT) martfilters_OBJECTS = $(am_martfilters_OBJECTS) martfilters_LDADD = $(LDADD) @@ -1033,7 +1034,7 @@ martfilters_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_martquery_OBJECTS = martquery.$(OBJEXT) martquery_OBJECTS = $(am_martquery_OBJECTS) martquery_LDADD = $(LDADD) @@ -1041,7 +1042,7 @@ martquery_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_martregistry_OBJECTS = martregistry.$(OBJEXT) martregistry_OBJECTS = $(am_martregistry_OBJECTS) martregistry_LDADD = $(LDADD) @@ -1049,14 +1050,14 @@ martregistry_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_martseqs_OBJECTS = martseqs.$(OBJEXT) martseqs_OBJECTS = $(am_martseqs_OBJECTS) martseqs_LDADD = $(LDADD) martseqs_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_maskambignuc_OBJECTS = maskambignuc.$(OBJEXT) maskambignuc_OBJECTS = $(am_maskambignuc_OBJECTS) @@ -1065,7 +1066,7 @@ maskambignuc_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_maskambigprot_OBJECTS = maskambigprot.$(OBJEXT) maskambigprot_OBJECTS = $(am_maskambigprot_OBJECTS) maskambigprot_LDADD = $(LDADD) @@ -1073,14 +1074,14 @@ maskambigprot_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_maskfeat_OBJECTS = maskfeat.$(OBJEXT) maskfeat_OBJECTS = $(am_maskfeat_OBJECTS) maskfeat_LDADD = $(LDADD) maskfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_maskseq_OBJECTS = maskseq.$(OBJEXT) maskseq_OBJECTS = $(am_maskseq_OBJECTS) @@ -1088,7 +1089,7 @@ maskseq_LDADD = $(LDADD) maskseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_matcher_OBJECTS = matcher.$(OBJEXT) matcher_OBJECTS = $(am_matcher_OBJECTS) @@ -1096,7 +1097,7 @@ matcher_LDADD = $(LDADD) matcher_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_megamerger_OBJECTS = megamerger.$(OBJEXT) megamerger_OBJECTS = $(am_megamerger_OBJECTS) @@ -1105,14 +1106,14 @@ megamerger_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_merger_OBJECTS = merger.$(OBJEXT) merger_OBJECTS = $(am_merger_OBJECTS) merger_LDADD = $(LDADD) merger_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_msbar_OBJECTS = msbar.$(OBJEXT) msbar_OBJECTS = $(am_msbar_OBJECTS) @@ -1120,7 +1121,7 @@ msbar_LDADD = $(LDADD) msbar_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_mwcontam_OBJECTS = mwcontam.$(OBJEXT) mwcontam_OBJECTS = $(am_mwcontam_OBJECTS) @@ -1128,7 +1129,7 @@ mwcontam_LDADD = $(LDADD) mwcontam_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_mwfilter_OBJECTS = mwfilter.$(OBJEXT) mwfilter_OBJECTS = $(am_mwfilter_OBJECTS) @@ -1136,7 +1137,7 @@ mwfilter_LDADD = $(LDADD) mwfilter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_needle_OBJECTS = needle.$(OBJEXT) needle_OBJECTS = $(am_needle_OBJECTS) @@ -1144,7 +1145,7 @@ needle_LDADD = $(LDADD) needle_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_needleall_OBJECTS = needleall.$(OBJEXT) needleall_OBJECTS = $(am_needleall_OBJECTS) @@ -1153,14 +1154,14 @@ needleall_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_newcoils_OBJECTS = newcoils.$(OBJEXT) newcoils_OBJECTS = $(am_newcoils_OBJECTS) newcoils_LDADD = $(LDADD) newcoils_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_newcpgreport_OBJECTS = newcpgreport.$(OBJEXT) newcpgreport_OBJECTS = $(am_newcpgreport_OBJECTS) @@ -1169,7 +1170,7 @@ newcpgreport_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_newcpgseek_OBJECTS = newcpgseek.$(OBJEXT) newcpgseek_OBJECTS = $(am_newcpgseek_OBJECTS) newcpgseek_LDADD = $(LDADD) @@ -1177,14 +1178,14 @@ newcpgseek_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_newseq_OBJECTS = newseq.$(OBJEXT) newseq_OBJECTS = $(am_newseq_OBJECTS) newseq_LDADD = $(LDADD) newseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_nohtml_OBJECTS = nohtml.$(OBJEXT) nohtml_OBJECTS = $(am_nohtml_OBJECTS) @@ -1192,7 +1193,7 @@ nohtml_LDADD = $(LDADD) nohtml_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_noreturn_OBJECTS = noreturn.$(OBJEXT) noreturn_OBJECTS = $(am_noreturn_OBJECTS) @@ -1200,7 +1201,7 @@ noreturn_LDADD = $(LDADD) noreturn_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_nospace_OBJECTS = nospace.$(OBJEXT) nospace_OBJECTS = $(am_nospace_OBJECTS) @@ -1208,7 +1209,7 @@ nospace_LDADD = $(LDADD) nospace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_notab_OBJECTS = notab.$(OBJEXT) notab_OBJECTS = $(am_notab_OBJECTS) @@ -1216,7 +1217,7 @@ notab_LDADD = $(LDADD) notab_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_notseq_OBJECTS = notseq.$(OBJEXT) notseq_OBJECTS = $(am_notseq_OBJECTS) @@ -1224,7 +1225,7 @@ notseq_LDADD = $(LDADD) notseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_nthseq_OBJECTS = nthseq.$(OBJEXT) nthseq_OBJECTS = $(am_nthseq_OBJECTS) @@ -1232,7 +1233,7 @@ nthseq_LDADD = $(LDADD) nthseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_nthseqset_OBJECTS = nthseqset.$(OBJEXT) nthseqset_OBJECTS = $(am_nthseqset_OBJECTS) @@ -1241,14 +1242,14 @@ nthseqset_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_octanol_OBJECTS = octanol.$(OBJEXT) octanol_OBJECTS = $(am_octanol_OBJECTS) octanol_LDADD = $(LDADD) octanol_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_oddcomp_OBJECTS = oddcomp.$(OBJEXT) oddcomp_OBJECTS = $(am_oddcomp_OBJECTS) @@ -1256,7 +1257,7 @@ oddcomp_LDADD = $(LDADD) oddcomp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_origsplitter_OBJECTS = origsplitter.$(OBJEXT) origsplitter_OBJECTS = $(am_origsplitter_OBJECTS) @@ -1265,7 +1266,7 @@ origsplitter_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_origunion_OBJECTS = origunion.$(OBJEXT) origunion_OBJECTS = $(am_origunion_OBJECTS) origunion_LDADD = $(LDADD) @@ -1273,7 +1274,7 @@ origunion_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_palindrome_OBJECTS = palindrome.$(OBJEXT) palindrome_OBJECTS = $(am_palindrome_OBJECTS) palindrome_LDADD = $(LDADD) @@ -1281,14 +1282,14 @@ palindrome_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_pasteseq_OBJECTS = pasteseq.$(OBJEXT) pasteseq_OBJECTS = $(am_pasteseq_OBJECTS) pasteseq_LDADD = $(LDADD) pasteseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_patmatdb_OBJECTS = patmatdb.$(OBJEXT) patmatdb_OBJECTS = $(am_patmatdb_OBJECTS) @@ -1296,7 +1297,7 @@ patmatdb_LDADD = $(LDADD) patmatdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_patmatmotifs_OBJECTS = patmatmotifs.$(OBJEXT) patmatmotifs_OBJECTS = $(am_patmatmotifs_OBJECTS) @@ -1305,7 +1306,7 @@ patmatmotifs_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_patmattest_OBJECTS = patmattest.$(OBJEXT) patmattest_OBJECTS = $(am_patmattest_OBJECTS) patmattest_LDADD = $(LDADD) @@ -1313,14 +1314,14 @@ patmattest_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_pepcoil_OBJECTS = pepcoil.$(OBJEXT) pepcoil_OBJECTS = $(am_pepcoil_OBJECTS) pepcoil_LDADD = $(LDADD) pepcoil_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_pepinfo_OBJECTS = pepinfo.$(OBJEXT) pepinfo_OBJECTS = $(am_pepinfo_OBJECTS) @@ -1328,7 +1329,7 @@ pepinfo_LDADD = $(LDADD) pepinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_pepnet_OBJECTS = pepnet.$(OBJEXT) pepnet_OBJECTS = $(am_pepnet_OBJECTS) @@ -1336,7 +1337,7 @@ pepnet_LDADD = $(LDADD) pepnet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_pepstats_OBJECTS = pepstats.$(OBJEXT) pepstats_OBJECTS = $(am_pepstats_OBJECTS) @@ -1344,7 +1345,7 @@ pepstats_LDADD = $(LDADD) pepstats_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_pepwheel_OBJECTS = pepwheel.$(OBJEXT) pepwheel_OBJECTS = $(am_pepwheel_OBJECTS) @@ -1352,7 +1353,7 @@ pepwheel_LDADD = $(LDADD) pepwheel_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_pepwindow_OBJECTS = pepwindow.$(OBJEXT) pepwindow_OBJECTS = $(am_pepwindow_OBJECTS) @@ -1361,7 +1362,7 @@ pepwindow_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_pepwindowall_OBJECTS = pepwindowall.$(OBJEXT) pepwindowall_OBJECTS = $(am_pepwindowall_OBJECTS) pepwindowall_LDADD = $(LDADD) @@ -1369,14 +1370,14 @@ pepwindowall_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_plotcon_OBJECTS = plotcon.$(OBJEXT) plotcon_OBJECTS = $(am_plotcon_OBJECTS) plotcon_LDADD = $(LDADD) plotcon_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_plotorf_OBJECTS = plotorf.$(OBJEXT) plotorf_OBJECTS = $(am_plotorf_OBJECTS) @@ -1384,7 +1385,7 @@ plotorf_LDADD = $(LDADD) plotorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_polydot_OBJECTS = polydot.$(OBJEXT) polydot_OBJECTS = $(am_polydot_OBJECTS) @@ -1392,7 +1393,7 @@ polydot_LDADD = $(LDADD) polydot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_preg_OBJECTS = preg.$(OBJEXT) preg_OBJECTS = $(am_preg_OBJECTS) @@ -1400,7 +1401,7 @@ preg_LDADD = $(LDADD) preg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_prettyplot_OBJECTS = prettyplot.$(OBJEXT) prettyplot_OBJECTS = $(am_prettyplot_OBJECTS) @@ -1409,7 +1410,7 @@ prettyplot_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_prettyseq_OBJECTS = prettyseq.$(OBJEXT) prettyseq_OBJECTS = $(am_prettyseq_OBJECTS) prettyseq_LDADD = $(LDADD) @@ -1417,14 +1418,14 @@ prettyseq_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_prima_OBJECTS = prima.$(OBJEXT) prima_OBJECTS = $(am_prima_OBJECTS) prima_LDADD = $(LDADD) prima_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_primers_OBJECTS = primers.$(OBJEXT) primers_OBJECTS = $(am_primers_OBJECTS) @@ -1432,7 +1433,7 @@ primers_LDADD = $(LDADD) primers_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_primersearch_OBJECTS = primersearch.$(OBJEXT) primersearch_OBJECTS = $(am_primersearch_OBJECTS) @@ -1441,7 +1442,7 @@ primersearch_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_printsextract_OBJECTS = printsextract.$(OBJEXT) printsextract_OBJECTS = $(am_printsextract_OBJECTS) printsextract_LDADD = $(LDADD) @@ -1449,14 +1450,14 @@ printsextract_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_profit_OBJECTS = profit.$(OBJEXT) profit_OBJECTS = $(am_profit_OBJECTS) profit_LDADD = $(LDADD) profit_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_prophecy_OBJECTS = prophecy.$(OBJEXT) prophecy_OBJECTS = $(am_prophecy_OBJECTS) @@ -1464,7 +1465,7 @@ prophecy_LDADD = $(LDADD) prophecy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_prophet_OBJECTS = prophet.$(OBJEXT) prophet_OBJECTS = $(am_prophet_OBJECTS) @@ -1472,7 +1473,7 @@ prophet_LDADD = $(LDADD) prophet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_prosextract_OBJECTS = prosextract.$(OBJEXT) prosextract_OBJECTS = $(am_prosextract_OBJECTS) @@ -1481,14 +1482,14 @@ prosextract_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_pscan_OBJECTS = pscan.$(OBJEXT) pscan_OBJECTS = $(am_pscan_OBJECTS) pscan_LDADD = $(LDADD) pscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_psiphi_OBJECTS = psiphi.$(OBJEXT) psiphi_OBJECTS = $(am_psiphi_OBJECTS) @@ -1496,7 +1497,7 @@ psiphi_LDADD = $(LDADD) psiphi_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_rebaseextract_OBJECTS = rebaseextract.$(OBJEXT) rebaseextract_OBJECTS = $(am_rebaseextract_OBJECTS) @@ -1505,14 +1506,14 @@ rebaseextract_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_recoder_OBJECTS = recoder.$(OBJEXT) recoder_OBJECTS = $(am_recoder_OBJECTS) recoder_LDADD = $(LDADD) recoder_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_redata_OBJECTS = redata.$(OBJEXT) redata_OBJECTS = $(am_redata_OBJECTS) @@ -1520,7 +1521,7 @@ redata_LDADD = $(LDADD) redata_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_remap_OBJECTS = remap.$(OBJEXT) remap_OBJECTS = $(am_remap_OBJECTS) @@ -1528,7 +1529,7 @@ remap_LDADD = $(LDADD) remap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_restover_OBJECTS = restover.$(OBJEXT) restover_OBJECTS = $(am_restover_OBJECTS) @@ -1536,7 +1537,7 @@ restover_LDADD = $(LDADD) restover_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_restrict_OBJECTS = restrict.$(OBJEXT) restrict_OBJECTS = $(am_restrict_OBJECTS) @@ -1544,7 +1545,7 @@ restrict_LDADD = $(LDADD) restrict_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_revseq_OBJECTS = revseq.$(OBJEXT) revseq_OBJECTS = $(am_revseq_OBJECTS) @@ -1552,7 +1553,7 @@ revseq_LDADD = $(LDADD) revseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_seealso_OBJECTS = seealso.$(OBJEXT) seealso_OBJECTS = $(am_seealso_OBJECTS) @@ -1560,7 +1561,7 @@ seealso_LDADD = $(LDADD) seealso_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_seqinfo_OBJECTS = seqinfo.$(OBJEXT) seqinfo_OBJECTS = $(am_seqinfo_OBJECTS) @@ -1568,7 +1569,7 @@ seqinfo_LDADD = $(LDADD) seqinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_seqmatchall_OBJECTS = seqmatchall.$(OBJEXT) seqmatchall_OBJECTS = $(am_seqmatchall_OBJECTS) @@ -1577,14 +1578,14 @@ seqmatchall_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_seqret_OBJECTS = seqret.$(OBJEXT) seqret_OBJECTS = $(am_seqret_OBJECTS) seqret_LDADD = $(LDADD) seqret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_seqretall_OBJECTS = seqretall.$(OBJEXT) seqretall_OBJECTS = $(am_seqretall_OBJECTS) @@ -1593,7 +1594,7 @@ seqretall_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_seqretallfeat_OBJECTS = seqretallfeat.$(OBJEXT) seqretallfeat_OBJECTS = $(am_seqretallfeat_OBJECTS) seqretallfeat_LDADD = $(LDADD) @@ -1601,7 +1602,7 @@ seqretallfeat_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_seqretset_OBJECTS = seqretset.$(OBJEXT) seqretset_OBJECTS = $(am_seqretset_OBJECTS) seqretset_LDADD = $(LDADD) @@ -1609,7 +1610,7 @@ seqretset_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_seqretsetall_OBJECTS = seqretsetall.$(OBJEXT) seqretsetall_OBJECTS = $(am_seqretsetall_OBJECTS) seqretsetall_LDADD = $(LDADD) @@ -1617,7 +1618,7 @@ seqretsetall_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_seqretsingle_OBJECTS = seqretsingle.$(OBJEXT) seqretsingle_OBJECTS = $(am_seqretsingle_OBJECTS) seqretsingle_LDADD = $(LDADD) @@ -1625,7 +1626,7 @@ seqretsingle_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_seqretsplit_OBJECTS = seqretsplit.$(OBJEXT) seqretsplit_OBJECTS = $(am_seqretsplit_OBJECTS) seqretsplit_LDADD = $(LDADD) @@ -1633,7 +1634,7 @@ seqretsplit_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_seqrettype_OBJECTS = seqrettype.$(OBJEXT) seqrettype_OBJECTS = $(am_seqrettype_OBJECTS) seqrettype_LDADD = $(LDADD) @@ -1641,7 +1642,7 @@ seqrettype_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_showalign_OBJECTS = showalign.$(OBJEXT) showalign_OBJECTS = $(am_showalign_OBJECTS) showalign_LDADD = $(LDADD) @@ -1649,14 +1650,14 @@ showalign_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_showdb_OBJECTS = showdb.$(OBJEXT) showdb_OBJECTS = $(am_showdb_OBJECTS) showdb_LDADD = $(LDADD) showdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_showfeat_OBJECTS = showfeat.$(OBJEXT) showfeat_OBJECTS = $(am_showfeat_OBJECTS) @@ -1664,7 +1665,7 @@ showfeat_LDADD = $(LDADD) showfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_showorf_OBJECTS = showorf.$(OBJEXT) showorf_OBJECTS = $(am_showorf_OBJECTS) @@ -1672,7 +1673,7 @@ showorf_LDADD = $(LDADD) showorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_showpep_OBJECTS = showpep.$(OBJEXT) showpep_OBJECTS = $(am_showpep_OBJECTS) @@ -1680,7 +1681,7 @@ showpep_LDADD = $(LDADD) showpep_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_showseq_OBJECTS = showseq.$(OBJEXT) showseq_OBJECTS = $(am_showseq_OBJECTS) @@ -1688,7 +1689,7 @@ showseq_LDADD = $(LDADD) showseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_shuffleseq_OBJECTS = shuffleseq.$(OBJEXT) shuffleseq_OBJECTS = $(am_shuffleseq_OBJECTS) @@ -1697,7 +1698,7 @@ shuffleseq_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_sigcleave_OBJECTS = sigcleave.$(OBJEXT) sigcleave_OBJECTS = $(am_sigcleave_OBJECTS) sigcleave_LDADD = $(LDADD) @@ -1705,14 +1706,14 @@ sigcleave_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_silent_OBJECTS = silent.$(OBJEXT) silent_OBJECTS = $(am_silent_OBJECTS) silent_LDADD = $(LDADD) silent_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_sirna_OBJECTS = sirna.$(OBJEXT) sirna_OBJECTS = $(am_sirna_OBJECTS) @@ -1720,7 +1721,7 @@ sirna_LDADD = $(LDADD) sirna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_sixpack_OBJECTS = sixpack.$(OBJEXT) sixpack_OBJECTS = $(am_sixpack_OBJECTS) @@ -1728,7 +1729,7 @@ sixpack_LDADD = $(LDADD) sixpack_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_sizeseq_OBJECTS = sizeseq.$(OBJEXT) sizeseq_OBJECTS = $(am_sizeseq_OBJECTS) @@ -1736,7 +1737,7 @@ sizeseq_LDADD = $(LDADD) sizeseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_skipredundant_OBJECTS = skipredundant.$(OBJEXT) skipredundant_OBJECTS = $(am_skipredundant_OBJECTS) @@ -1745,14 +1746,14 @@ skipredundant_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_skipseq_OBJECTS = skipseq.$(OBJEXT) skipseq_OBJECTS = $(am_skipseq_OBJECTS) skipseq_LDADD = $(LDADD) skipseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) splitsource_SOURCES = splitsource.c splitsource_OBJECTS = splitsource.$(OBJEXT) @@ -1761,14 +1762,14 @@ splitsource_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_splitter_OBJECTS = splitter.$(OBJEXT) splitter_OBJECTS = $(am_splitter_OBJECTS) splitter_LDADD = $(LDADD) splitter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_sqltest_OBJECTS = sqltest.$(OBJEXT) sqltest_OBJECTS = $(am_sqltest_OBJECTS) @@ -1776,7 +1777,7 @@ sqltest_LDADD = $(LDADD) sqltest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_stretcher_OBJECTS = stretcher.$(OBJEXT) stretcher_OBJECTS = $(am_stretcher_OBJECTS) @@ -1785,7 +1786,7 @@ stretcher_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_stssearch_OBJECTS = stssearch.$(OBJEXT) stssearch_OBJECTS = $(am_stssearch_OBJECTS) stssearch_LDADD = $(LDADD) @@ -1793,7 +1794,7 @@ stssearch_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_supermatcher_OBJECTS = supermatcher.$(OBJEXT) supermatcher_OBJECTS = $(am_supermatcher_OBJECTS) supermatcher_LDADD = $(LDADD) @@ -1801,14 +1802,14 @@ supermatcher_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_syco_OBJECTS = syco.$(OBJEXT) syco_OBJECTS = $(am_syco_OBJECTS) syco_LDADD = $(LDADD) syco_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_tcode_OBJECTS = tcode.$(OBJEXT) tcode_OBJECTS = $(am_tcode_OBJECTS) @@ -1816,7 +1817,7 @@ tcode_LDADD = $(LDADD) tcode_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_testplot_OBJECTS = testplot.$(OBJEXT) testplot_OBJECTS = $(am_testplot_OBJECTS) @@ -1824,7 +1825,7 @@ testplot_LDADD = $(LDADD) testplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_textsearch_OBJECTS = textsearch.$(OBJEXT) textsearch_OBJECTS = $(am_textsearch_OBJECTS) @@ -1833,7 +1834,7 @@ textsearch_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_tfextract_OBJECTS = tfextract.$(OBJEXT) tfextract_OBJECTS = $(am_tfextract_OBJECTS) tfextract_LDADD = $(LDADD) @@ -1841,14 +1842,14 @@ tfextract_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_tfm_OBJECTS = tfm.$(OBJEXT) tfm_OBJECTS = $(am_tfm_OBJECTS) tfm_LDADD = $(LDADD) tfm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_tfscan_OBJECTS = tfscan.$(OBJEXT) tfscan_OBJECTS = $(am_tfscan_OBJECTS) @@ -1856,7 +1857,7 @@ tfscan_LDADD = $(LDADD) tfscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_tmap_OBJECTS = tmap.$(OBJEXT) tmap_OBJECTS = $(am_tmap_OBJECTS) @@ -1864,7 +1865,7 @@ tmap_LDADD = $(LDADD) tmap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_tranalign_OBJECTS = tranalign.$(OBJEXT) tranalign_OBJECTS = $(am_tranalign_OBJECTS) @@ -1873,14 +1874,14 @@ tranalign_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_transeq_OBJECTS = transeq.$(OBJEXT) transeq_OBJECTS = $(am_transeq_OBJECTS) transeq_LDADD = $(LDADD) transeq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_treetypedisplay_OBJECTS = treetypedisplay.$(OBJEXT) treetypedisplay_OBJECTS = $(am_treetypedisplay_OBJECTS) @@ -1889,14 +1890,14 @@ treetypedisplay_DEPENDENCIES = ../nucleu ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_trimest_OBJECTS = trimest.$(OBJEXT) trimest_OBJECTS = $(am_trimest_OBJECTS) trimest_LDADD = $(LDADD) trimest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_trimseq_OBJECTS = trimseq.$(OBJEXT) trimseq_OBJECTS = $(am_trimseq_OBJECTS) @@ -1904,7 +1905,7 @@ trimseq_LDADD = $(LDADD) trimseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_trimspace_OBJECTS = trimspace.$(OBJEXT) trimspace_OBJECTS = $(am_trimspace_OBJECTS) @@ -1913,14 +1914,14 @@ trimspace_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_twofeat_OBJECTS = twofeat.$(OBJEXT) twofeat_OBJECTS = $(am_twofeat_OBJECTS) twofeat_LDADD = $(LDADD) twofeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_union_OBJECTS = union.$(OBJEXT) union_OBJECTS = $(am_union_OBJECTS) @@ -1928,7 +1929,7 @@ union_LDADD = $(LDADD) union_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_vectorstrip_OBJECTS = vectorstrip.$(OBJEXT) vectorstrip_OBJECTS = $(am_vectorstrip_OBJECTS) @@ -1937,14 +1938,14 @@ vectorstrip_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_water_OBJECTS = water.$(OBJEXT) water_OBJECTS = $(am_water_OBJECTS) water_LDADD = $(LDADD) water_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_whichdb_OBJECTS = whichdb.$(OBJEXT) whichdb_OBJECTS = $(am_whichdb_OBJECTS) @@ -1952,7 +1953,7 @@ whichdb_LDADD = $(LDADD) whichdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_wobble_OBJECTS = wobble.$(OBJEXT) wobble_OBJECTS = $(am_wobble_OBJECTS) @@ -1960,7 +1961,7 @@ wobble_LDADD = $(LDADD) wobble_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_wordcount_OBJECTS = wordcount.$(OBJEXT) wordcount_OBJECTS = $(am_wordcount_OBJECTS) @@ -1969,7 +1970,7 @@ wordcount_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_wordfinder_OBJECTS = wordfinder.$(OBJEXT) wordfinder_OBJECTS = $(am_wordfinder_OBJECTS) wordfinder_LDADD = $(LDADD) @@ -1977,7 +1978,7 @@ wordfinder_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_wordmatch_OBJECTS = wordmatch.$(OBJEXT) wordmatch_OBJECTS = $(am_wordmatch_OBJECTS) wordmatch_LDADD = $(LDADD) @@ -1985,14 +1986,14 @@ wordmatch_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la $(EXTRA_LDS) \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) am_wossname_OBJECTS = wossname.$(OBJEXT) wossname_OBJECTS = $(am_wossname_OBJECTS) wossname_LDADD = $(LDADD) wossname_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) am_yank_OBJECTS = yank.$(OBJEXT) yank_OBJECTS = $(am_yank_OBJECTS) @@ -2000,7 +2001,7 @@ yank_LDADD = $(LDADD) yank_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(EXTRA_LDS) \ $(am__DEPENDENCIES_1) DEFAULT_INCLUDES = -I.@am__isrc@ depcomp = $(SHELL) $(top_srcdir)/depcomp @@ -2328,6 +2329,8 @@ PCRE_MINOR = @PCRE_MINOR@ PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ PCRE_VERSION = @PCRE_VERSION@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ @@ -2410,12 +2413,12 @@ EXTRA_DIST = emboss.default.template @ISAIXIA64_TRUE@@ISSHARED_TRUE@ -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre -lezlib AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS) $(DEVWARN_CFLAGS) -@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre +@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot INCLUDES = -I$(top_srcdir)/nucleus \ - $(EXTRA_INCLUDES) \ + $(EXTRA_INCLUDES) $(PLPLOT_CFLAGS) \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ -I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \ - -I$(top_srcdir)/ajax/acd -I$(top_srcdir)/plplot + -I$(top_srcdir)/ajax/acd aaindexextract_SOURCES = aaindexextract.c abiview_SOURCES = abiview.c @@ -2643,12 +2646,12 @@ seqrettype_SOURCES = seqrettype.c sqltest_SOURCES = sqltest.c testplot_SOURCES = testplot.c treetypedisplay_SOURCES = treetypedisplay.c -@ESYSTEMLIBS_FALSE@EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la +@ESYSTEMLIBS_FALSE@EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la LDADD = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ $(EXTRA_LDS) \ - ../plplot/libeplplot.la \ + $(PLPLOT_LIBS) \ $(XLIB) pkgdata_DATA = emboss.default.template diff -up EMBOSS-6.3.1/m4/plplot.m4.system-plplot EMBOSS-6.3.1/m4/plplot.m4 --- EMBOSS-6.3.1/m4/plplot.m4.system-plplot 2010-08-03 08:01:37.989233208 -0400 +++ EMBOSS-6.3.1/m4/plplot.m4 2010-08-03 08:01:37.989233208 -0400 @@ -0,0 +1,84 @@ +dnl @synopsis CHECK_PLPLOT([PLPLOT_LIBDIR, PLPLOT_INCDIR, +dnl [ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]]) +dnl This macro figures out if the PlPlot library and header files +dnl are installed. +dnl You may wish to use these variables in your default LIBS and CFLAGS: +dnl +dnl LIBS="$PLPLOT_LIBS $LIBS" +dnl CFLAGS="$CFLAGS $PLPLOT_CFLAGS" +dnl +dnl ACTION-IF-FOUND is a list of shell commands to run if PlPlot +dnl is found (HAVE_PLPLOT is defined first), and ACTION-IF-NOT-FOUND +dnl is a list of commands to run it if it is not found. +dnl +dnl @author Emmanuel Bertin + +AC_DEFUN([CHECK_PLPLOT], [ +AC_REQUIRE([AC_CANONICAL_HOST]) + +PLPLOT_LIBS="" +OLIBS="$LIBS" +LIBS="" + +check_plplot_ok=yes +check_plplotpkg_ok=no +if test x$2 = x && test x$1 = x; then + AC_MSG_CHECKING([for PLPlot pkg-config info]) + if pkg-config --exists plplotd; then + AC_MSG_RESULT([yes]) + [PLPLOT_CFLAGS=`pkg-config --cflags plplotd`] + [PLPLOT_LIBS=`pkg-config --libs plplotd`] + AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.]) + AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.]) + check_plplotpkg_ok=yes + else + AC_MSG_RESULT([no]) + fi +fi +if test x$check_plplotpkg_ok = xno; then + if test x$2 = x; then + AC_CHECK_HEADER(plplot.h, [check_plplothead_ok=yes], [check_plplothead_ok=no]) + if test x$check_plplothead_ok = xyes; then + AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.]) + AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.]) + else + AC_CHECK_HEADER(plplot/plplot.h, + [check_plplothead_ok=yes], [check_plplothead_ok=no]) + if test x$check_plplothead_ok = xyes; then + AC_DEFINE(PLPLOT_H, "plplot/plplot.h", [PLPlot header filename.]) + AC_DEFINE(PLPLOTP_H, "plplot/plplotP.h", + [PLPlot private header filename.]) + else + check_plplot_ok=no + fi + fi + else + AC_CHECK_HEADER($2/plplot.h, + [check_plplothead_ok=yes], [check_plplothead_ok=no]) + if test x$check_plplothead_ok = xyes; then + AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.]) + AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.]) + [PLPLOT_CFLAGS="-I$2"] + else + check_plplot_ok=no + fi + fi + if test x$1 = x; then + AC_CHECK_LIB(plplotd, c_plinit,, [check_plplot_ok=no]) + [PLPLOT_LIBS="-lplplotd"] + else + AC_CHECK_LIB(plplotd, c_plinit,, [check_plplot_ok=no], [-L$1]) + [PLPLOT_LIBS="-L$1 -lplplotd"] + fi +fi + +LIBS="$OLIBS" +if test x$check_plplot_ok = xyes; then + AC_SUBST(PLPLOT_CFLAGS) + AC_SUBST(PLPLOT_LIBS) + AC_DEFINE(HAVE_PLPLOT,1, + [Define if you have the PLPlot libraries and header files.]) +fi + +])dnl CHECK_PLPLOT + diff -up EMBOSS-6.3.1/Makefile.am.system-plplot EMBOSS-6.3.1/Makefile.am --- EMBOSS-6.3.1/Makefile.am.system-plplot 2010-01-11 08:15:41.000000000 -0500 +++ EMBOSS-6.3.1/Makefile.am 2010-08-03 08:01:37.989233208 -0400 @@ -5,7 +5,7 @@ ACLOCAL_AMFLAGS = -I m4 AUTOMAKE_OPTIONS = gnits -SUBDIRS = plplot ajax nucleus emboss test doc jemboss +SUBDIRS = ajax nucleus emboss test doc jemboss # AJAX_FIXED_ROOT = \"`pwd`/emboss/acd\" @@ -20,6 +20,5 @@ dist-hook: tar cBf - test | ( cd $(distdir); tar xBf - ; rm -rf test/CVS test/*/CVS ) tar cBf - emboss/acd | ( cd $(distdir); tar xBf - ; cd emboss/acd; rm -rf CVS ) tar cBf - emboss/data | ( cd $(distdir); tar xBf - ; cd emboss/data; rm -rf CVS */CVS */*/CVS ) - tar cBf - plplot/lib | ( cd $(distdir); tar xBf - ; find plplot -name CVS | xargs rm -rf ) tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; ) tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf ) diff -up EMBOSS-6.3.1/Makefile.in.system-plplot EMBOSS-6.3.1/Makefile.in --- EMBOSS-6.3.1/Makefile.in.system-plplot 2010-07-19 07:55:42.000000000 -0400 +++ EMBOSS-6.3.1/Makefile.in 2010-08-03 08:01:37.989233208 -0400 @@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ - $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ + $(top_srcdir)/m4/pngdriver.m4 \ $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ @@ -182,6 +183,8 @@ PCRE_MINOR = @PCRE_MINOR@ PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ PCRE_VERSION = @PCRE_VERSION@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ @@ -257,7 +260,7 @@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ ACLOCAL_AMFLAGS = -I m4 AUTOMAKE_OPTIONS = gnits -SUBDIRS = plplot ajax nucleus emboss test doc jemboss +SUBDIRS = ajax nucleus emboss test doc jemboss # AJAX_FIXED_ROOT = \"`pwd`/emboss/acd\" @@ -757,7 +760,6 @@ dist-hook: tar cBf - test | ( cd $(distdir); tar xBf - ; rm -rf test/CVS test/*/CVS ) tar cBf - emboss/acd | ( cd $(distdir); tar xBf - ; cd emboss/acd; rm -rf CVS ) tar cBf - emboss/data | ( cd $(distdir); tar xBf - ; cd emboss/data; rm -rf CVS */CVS */*/CVS ) - tar cBf - plplot/lib | ( cd $(distdir); tar xBf - ; find plplot -name CVS | xargs rm -rf ) tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; ) tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf ) diff -up EMBOSS-6.3.1/nucleus/Makefile.am.system-plplot EMBOSS-6.3.1/nucleus/Makefile.am --- EMBOSS-6.3.1/nucleus/Makefile.am.system-plplot 2010-08-03 08:01:37.969108470 -0400 +++ EMBOSS-6.3.1/nucleus/Makefile.am 2010-08-03 08:01:37.990233208 -0400 @@ -19,12 +19,12 @@ CYGWIN_LIBS = -L../plplot -L../ajax/pcre -lezlib -leplplot else if !ESYSTEMLIBS -EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre +EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot endif endif -INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \ +INCLUDES = $(PLPLOT_CFLAGS) $(X_CFLAGS) -I$(srcdir)/ \ -I$(top_srcdir)/ajax \ $(EXTRA_INCLUDES) \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ diff -up EMBOSS-6.3.1/nucleus/Makefile.in.system-plplot EMBOSS-6.3.1/nucleus/Makefile.in --- EMBOSS-6.3.1/nucleus/Makefile.in.system-plplot 2010-08-03 08:01:37.969108470 -0400 +++ EMBOSS-6.3.1/nucleus/Makefile.in 2010-08-03 08:01:37.990233208 -0400 @@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ - $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ + $(top_srcdir)/m4/pngdriver.m4 \ $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ @@ -178,6 +179,8 @@ PCRE_MINOR = @PCRE_MINOR@ PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ PCRE_VERSION = @PCRE_VERSION@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ @@ -262,8 +265,8 @@ AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS) @ISCYGWIN_TRUE@-L../ajax/acd -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre \ @ISCYGWIN_TRUE@-lezlib -leplplot -@ESYSTEMLIBS_FALSE@@ISCYGWIN_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \ +@ESYSTEMLIBS_FALSE@@ISCYGWIN_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot +INCLUDES = $(PLPLOT_CFLAGS) $(X_CFLAGS) -I$(srcdir)/ \ -I$(top_srcdir)/ajax \ $(EXTRA_INCLUDES) \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \