diff -up EMBOSS-6.2.0/aclocal.m4.system-plplot EMBOSS-6.2.0/aclocal.m4 --- EMBOSS-6.2.0/aclocal.m4.system-plplot 2010-04-07 12:06:27.463631022 -0400 +++ EMBOSS-6.2.0/aclocal.m4 2010-04-07 12:06:46.105630532 -0400 @@ -8903,6 +8903,7 @@ m4_include([m4/general.m4]) m4_include([m4/java.m4]) m4_include([m4/lf_x11.m4]) m4_include([m4/mysql.m4]) +m4_include([m4/plplot.m4]) m4_include([m4/pngdriver.m4]) m4_include([m4/postgresql.m4]) m4_include([m4/sgi.m4]) diff -up EMBOSS-6.2.0/ajax/acd/Makefile.am.system-plplot EMBOSS-6.2.0/ajax/acd/Makefile.am --- EMBOSS-6.2.0/ajax/acd/Makefile.am.system-plplot 2010-04-07 12:06:27.650744586 -0400 +++ EMBOSS-6.2.0/ajax/acd/Makefile.am 2010-04-07 12:06:27.741735646 -0400 @@ -12,7 +12,7 @@ CYGWIN_LDACD = -L../../plplot -L../pcre -leplplot -leexpat -lepcre -lezlib endif -INCLUDES = -I$(top_srcdir)/plplot \ +INCLUDES = $(PLPLOT_CFLAGS) \ -I$(top_srcdir)/ajax/expat \ -I$(top_srcdir)/ajax/core \ -I$(top_srcdir)/ajax/graphics \ diff -up EMBOSS-6.2.0/ajax/acd/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/acd/Makefile.in --- EMBOSS-6.2.0/ajax/acd/Makefile.in.system-plplot 2010-04-07 12:06:27.651761906 -0400 +++ EMBOSS-6.2.0/ajax/acd/Makefile.in 2010-04-07 12:10:21.118610767 -0400 @@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -166,6 +167,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ @@ -247,7 +250,7 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL @ISCYGWIN_TRUE@-L../graphics -L../ensembl -L../ajaxdb -lajaxdb -lensembl -lajaxg -lajax \ @ISCYGWIN_TRUE@-leplplot -leexpat -lepcre -lezlib -INCLUDES = -I$(top_srcdir)/plplot \ +INCLUDES = $(PLPLOT_CFLAGS) \ -I$(top_srcdir)/ajax/expat \ -I$(top_srcdir)/ajax/core \ -I$(top_srcdir)/ajax/graphics \ diff -up EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am.system-plplot EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am --- EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am.system-plplot 2010-04-07 12:06:27.652757995 -0400 +++ EMBOSS-6.2.0/ajax/ajaxdb/Makefile.am 2010-04-07 12:06:27.743735506 -0400 @@ -11,7 +11,7 @@ CYGWIN_LDAJAXDB = -L../../plplot -L../pc -L../ensembl -lensembl lajax -leplplot -leexpat -lepcre -lezlib endif -INCLUDES = -I$(top_srcdir)/plplot \ +INCLUDES = $(PLPLOT_CFLAGS) \ -I$(top_srcdir)/ajax/expat \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl diff -up EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in --- EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in.system-plplot 2010-04-07 12:06:27.653756808 -0400 +++ EMBOSS-6.2.0/ajax/ajaxdb/Makefile.in 2010-04-07 12:10:21.257610488 -0400 @@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -166,6 +167,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ @@ -246,7 +249,7 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL @ISCYGWIN_TRUE@CYGWIN_LDAJAXDB = -L../../plplot -L../pcre -L../expat -L../zlib -L../core \ @ISCYGWIN_TRUE@-L../ensembl -lensembl lajax -leplplot -leexpat -lepcre -lezlib -INCLUDES = -I$(top_srcdir)/plplot \ +INCLUDES = $(PLPLOT_CFLAGS) \ -I$(top_srcdir)/ajax/expat \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl diff -up EMBOSS-6.2.0/ajax/core/Makefile.am.system-plplot EMBOSS-6.2.0/ajax/core/Makefile.am --- EMBOSS-6.2.0/ajax/core/Makefile.am.system-plplot 2010-04-07 12:06:27.654763792 -0400 +++ EMBOSS-6.2.0/ajax/core/Makefile.am 2010-04-07 12:06:27.745735297 -0400 @@ -13,7 +13,7 @@ endif INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \ -DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \ --I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat +$(PLPLOT_CFLAGS) -I$(top_srcdir)/ajax/expat AJAXSRC = ajalign.c ajarr.c ajassert.c \ ajbase.c ajcall.c ajcod.c \ diff -up EMBOSS-6.2.0/ajax/core/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/core/Makefile.in --- EMBOSS-6.2.0/ajax/core/Makefile.in.system-plplot 2010-04-07 12:06:27.657737741 -0400 +++ EMBOSS-6.2.0/ajax/core/Makefile.in 2010-04-07 12:10:21.395610139 -0400 @@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -174,6 +175,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ @@ -256,7 +259,7 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \ -DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \ --I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat +$(PLPLOT_CFLAGS) -I$(top_srcdir)/ajax/expat AJAXSRC = ajalign.c ajarr.c ajassert.c \ ajbase.c ajcall.c ajcod.c \ diff -up EMBOSS-6.2.0/ajax/ensembl/Makefile.am.system-plplot EMBOSS-6.2.0/ajax/ensembl/Makefile.am --- EMBOSS-6.2.0/ajax/ensembl/Makefile.am.system-plplot 2010-04-07 12:06:27.473610279 -0400 +++ EMBOSS-6.2.0/ajax/ensembl/Makefile.am 2010-04-07 12:06:27.748745703 -0400 @@ -9,7 +9,7 @@ CYGWIN_LDFLAGS = -no-undefined -Wl,--add CYGWIN_LDENSEMBL = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre endif -INCLUDES = -I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat \ +INCLUDES = $(PLPLOT_CFLAGS) -I$(top_srcdir)/ajax/expat \ -I$(top_srcdir)/ajax/core ENSEMBLSRC = ensanalysis.c ensassembly.c ensassemblyexception.c \ diff -up EMBOSS-6.2.0/ajax/ensembl/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/ensembl/Makefile.in --- EMBOSS-6.2.0/ajax/ensembl/Makefile.in.system-plplot 2010-04-07 12:06:27.474611257 -0400 +++ EMBOSS-6.2.0/ajax/ensembl/Makefile.in 2010-04-07 12:10:21.502617053 -0400 @@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -179,6 +180,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ @@ -255,7 +258,7 @@ lib_LTLIBRARIES = libensembl.la AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFLAGS) @ISCYGWIN_TRUE@CYGWIN_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import @ISCYGWIN_TRUE@CYGWIN_LDENSEMBL = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre -INCLUDES = -I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/expat \ +INCLUDES = $(PLPLOT_CFLAGS) -I$(top_srcdir)/ajax/expat \ -I$(top_srcdir)/ajax/core ENSEMBLSRC = ensanalysis.c ensassembly.c ensassemblyexception.c \ diff -up EMBOSS-6.2.0/ajax/expat/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/expat/Makefile.in --- EMBOSS-6.2.0/ajax/expat/Makefile.in.system-plplot 2010-04-07 12:06:27.476610209 -0400 +++ EMBOSS-6.2.0/ajax/expat/Makefile.in 2010-04-07 12:10:21.604610558 -0400 @@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -167,6 +168,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/ajax/graphics/ajgraph.c.system-plplot EMBOSS-6.2.0/ajax/graphics/ajgraph.c --- EMBOSS-6.2.0/ajax/graphics/ajgraph.c.system-plplot 2010-01-08 07:41:06.000000000 -0500 +++ EMBOSS-6.2.0/ajax/graphics/ajgraph.c 2010-04-07 12:06:27.756735855 -0400 @@ -35,7 +35,7 @@ #define AZ 28 -#include "plplotP.h" +#include static void GraphArray(ajuint numofpoints, @@ -974,8 +974,8 @@ static void GraphSetName(const AjPGraph { if(!thys->ready) { - ajDebug("=g= plxsfnam ('%S', '%s')\n", txt, ext); - plxsfnam(ajStrGetPtr(txt), ext); + ajDebug("=g= plsfnam ('%S')\n", txt); + plsfnam(ajStrGetPtr(txt)); ajStrAssignS(&graphBasename, txt); ajStrAssignC(&graphExtension, ext); if(ajStrGetCharFirst(graphExtension) == '.') diff -up EMBOSS-6.2.0/ajax/graphics/ajgraph.h.system-plplot EMBOSS-6.2.0/ajax/graphics/ajgraph.h --- EMBOSS-6.2.0/ajax/graphics/ajgraph.h.system-plplot 2010-01-08 06:05:09.000000000 -0500 +++ EMBOSS-6.2.0/ajax/graphics/ajgraph.h 2010-04-07 12:06:27.758735646 -0400 @@ -26,7 +26,7 @@ extern "C" #ifndef ajgraph_h #define ajgraph_h -#include "plplot.h" +#include #include "ajgraphstruct.h" #include "ajdefine.h" #include "ajstr.h" diff -up EMBOSS-6.2.0/ajax/graphics/Makefile.am.system-plplot EMBOSS-6.2.0/ajax/graphics/Makefile.am --- EMBOSS-6.2.0/ajax/graphics/Makefile.am.system-plplot 2010-04-07 12:06:27.477610349 -0400 +++ EMBOSS-6.2.0/ajax/graphics/Makefile.am 2010-04-07 12:06:27.759747729 -0400 @@ -9,7 +9,7 @@ CYGWIN_LDFLAGS = -no-undefined -Wl,--add CYGWIN_LDAJAXG = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre endif -INCLUDES = -I$(top_srcdir)/plplot \ +INCLUDES = $(PLPLOT_CFLAGS) \ -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/core AJAXGSRC = ajgraph.c ajhist.c diff -up EMBOSS-6.2.0/ajax/graphics/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/graphics/Makefile.in --- EMBOSS-6.2.0/ajax/graphics/Makefile.in.system-plplot 2010-04-07 12:06:27.479610279 -0400 +++ EMBOSS-6.2.0/ajax/graphics/Makefile.in 2010-04-07 12:10:21.791610767 -0400 @@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -166,6 +167,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ @@ -242,7 +245,7 @@ lib_LTLIBRARIES = libajaxg.la AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFLAGS) @ISCYGWIN_TRUE@CYGWIN_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import @ISCYGWIN_TRUE@CYGWIN_LDAJAXG = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre -INCLUDES = -I$(top_srcdir)/plplot \ +INCLUDES = $(PLPLOT_CFLAGS) \ -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/core AJAXGSRC = ajgraph.c ajhist.c diff -up EMBOSS-6.2.0/ajax/Makefile.in.system-plplot EMBOSS-6.2.0/ajax/Makefile.in --- EMBOSS-6.2.0/ajax/Makefile.in.system-plplot 2010-04-07 12:06:27.662735436 -0400 +++ EMBOSS-6.2.0/ajax/Makefile.in 2010-04-07 12:10:21.020610278 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/autom4te.cache/output.0.system-plplot EMBOSS-6.2.0/autom4te.cache/output.0 --- EMBOSS-6.2.0/autom4te.cache/output.0.system-plplot 2010-04-07 12:06:27.504735017 -0400 +++ EMBOSS-6.2.0/autom4te.cache/output.0 2010-04-07 12:06:47.253735225 -0400 @@ -778,6 +778,8 @@ MYSQL_LDFLAGS MYSQL_CFLAGS MYSQL_VERSION MYSQL_CONFIG +PLPLOT_LIBS +PLPLOT_CFLAGS JAVA_OK havejavac AMPNG_FALSE @@ -13769,6 +13771,204 @@ fi + + + +PLPLOT_LIBS="" +OLIBS="$LIBS" +LIBS="" + +check_plplot_ok=yes +check_plplotpkg_ok=no +if test x = x && test x = x; then + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for PLPlot pkg-config info" >&5 +$as_echo_n "checking for PLPlot pkg-config info... " >&6; } + if pkg-config --exists plplotd; then + { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +$as_echo "yes" >&6; } + PLPLOT_CFLAGS=`pkg-config --cflags plplotd` + PLPLOT_LIBS=`pkg-config --libs plplotd` + +$as_echo "@%:@define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "@%:@define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + check_plplotpkg_ok=yes + else + { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 +$as_echo "no" >&6; } + fi +fi +if test x$check_plplotpkg_ok = xno; then + if test x = x; then + ac_fn_c_check_header_mongrel "$LINENO" "plplot.h" "ac_cv_header_plplot_h" "$ac_includes_default" +if test "x$ac_cv_header_plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "@%:@define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "@%:@define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + else + ac_fn_c_check_header_mongrel "$LINENO" "plplot/plplot.h" "ac_cv_header_plplot_plplot_h" "$ac_includes_default" +if test "x$ac_cv_header_plplot_plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "@%:@define PLPLOT_H \"plplot/plplot.h\"" >>confdefs.h + + +$as_echo "@%:@define PLPLOTP_H \"plplot/plplotP.h\"" >>confdefs.h + + else + check_plplot_ok=no + fi + fi + else + ac_fn_c_check_header_mongrel "$LINENO" "/plplot.h" "ac_cv_header__plplot_h" "$ac_includes_default" +if test "x$ac_cv_header__plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "@%:@define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "@%:@define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + PLPLOT_CFLAGS="-I" + else + check_plplot_ok=no + fi + fi + if test x = x; then + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 +$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } +if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lplplotd $LIBS" +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char c_plinit (); +int +main () +{ +return c_plinit (); + ; + return 0; +} +_ACEOF +if ac_fn_c_try_link "$LINENO"; then : + ac_cv_lib_plplotd_c_plinit=yes +else + ac_cv_lib_plplotd_c_plinit=no +fi +rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 +$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } +if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : + cat >>confdefs.h <<_ACEOF +@%:@define HAVE_LIBPLPLOTD 1 +_ACEOF + + LIBS="-lplplotd $LIBS" + +else + check_plplot_ok=no +fi + + PLPLOT_LIBS="-lplplotd" + else + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 +$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } +if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lplplotd -L $LIBS" +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char c_plinit (); +int +main () +{ +return c_plinit (); + ; + return 0; +} +_ACEOF +if ac_fn_c_try_link "$LINENO"; then : + ac_cv_lib_plplotd_c_plinit=yes +else + ac_cv_lib_plplotd_c_plinit=no +fi +rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 +$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } +if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : + cat >>confdefs.h <<_ACEOF +@%:@define HAVE_LIBPLPLOTD 1 +_ACEOF + + LIBS="-lplplotd $LIBS" + +else + check_plplot_ok=no +fi + + PLPLOT_LIBS="-L -lplplotd" + fi +fi + +LIBS="$OLIBS" +if test x$check_plplot_ok = xyes; then + + + +$as_echo "@%:@define HAVE_PLPLOT 1" >>confdefs.h + +fi + + # # Handle user hints # @@ -15042,7 +15242,7 @@ fi -ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/api/Makefile jemboss/api/org/Makefile jemboss/api/org/emboss/Makefile jemboss/api/org/emboss/jemboss/Makefile jemboss/api/org/emboss/jemboss/gui/Makefile jemboss/api/org/emboss/jemboss/gui/filetree/Makefile jemboss/api/org/emboss/jemboss/gui/form/Makefile jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/api/org/emboss/jemboss/gui/startup/Makefile jemboss/api/org/emboss/jemboss/parser/Makefile jemboss/api/org/emboss/jemboss/parser/acd/Makefile jemboss/api/org/emboss/jemboss/programs/Makefile jemboss/api/org/emboss/jemboss/soap/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/org/Makefile jemboss/org/emboss/Makefile jemboss/org/emboss/jemboss/Makefile jemboss/org/emboss/jemboss/graphics/Makefile jemboss/org/emboss/jemboss/gui/Makefile jemboss/org/emboss/jemboss/gui/filetree/Makefile jemboss/org/emboss/jemboss/gui/form/Makefile jemboss/org/emboss/jemboss/gui/startup/Makefile jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/org/emboss/jemboss/parser/Makefile jemboss/org/emboss/jemboss/parser/acd/Makefile jemboss/org/emboss/jemboss/programs/Makefile jemboss/org/emboss/jemboss/server/Makefile jemboss/org/emboss/jemboss/soap/Makefile jemboss/org/emboss/jemboss/editor/Makefile jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile" +ac_config_files="$ac_config_files nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/api/Makefile jemboss/api/org/Makefile jemboss/api/org/emboss/Makefile jemboss/api/org/emboss/jemboss/Makefile jemboss/api/org/emboss/jemboss/gui/Makefile jemboss/api/org/emboss/jemboss/gui/filetree/Makefile jemboss/api/org/emboss/jemboss/gui/form/Makefile jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/api/org/emboss/jemboss/gui/startup/Makefile jemboss/api/org/emboss/jemboss/parser/Makefile jemboss/api/org/emboss/jemboss/parser/acd/Makefile jemboss/api/org/emboss/jemboss/programs/Makefile jemboss/api/org/emboss/jemboss/soap/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/org/Makefile jemboss/org/emboss/Makefile jemboss/org/emboss/jemboss/Makefile jemboss/org/emboss/jemboss/graphics/Makefile jemboss/org/emboss/jemboss/gui/Makefile jemboss/org/emboss/jemboss/gui/filetree/Makefile jemboss/org/emboss/jemboss/gui/form/Makefile jemboss/org/emboss/jemboss/gui/startup/Makefile jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/org/emboss/jemboss/parser/Makefile jemboss/org/emboss/jemboss/parser/acd/Makefile jemboss/org/emboss/jemboss/programs/Makefile jemboss/org/emboss/jemboss/server/Makefile jemboss/org/emboss/jemboss/soap/Makefile jemboss/org/emboss/jemboss/editor/Makefile jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile" cat >confcache <<\_ACEOF # This file is a shell script that caches the results of configure @@ -16076,12 +16276,9 @@ do case $ac_config_target in "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;; "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;; - "plplot/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/Makefile" ;; - "plplot/lib/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/lib/Makefile" ;; "nucleus/Makefile") CONFIG_FILES="$CONFIG_FILES nucleus/Makefile" ;; "ajax/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/Makefile" ;; "ajax/expat/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/expat/Makefile" ;; - "ajax/zlib/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/zlib/Makefile" ;; "ajax/core/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/core/Makefile" ;; "ajax/graphics/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/graphics/Makefile" ;; "ajax/ensembl/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/ensembl/Makefile" ;; diff -up EMBOSS-6.2.0/autom4te.cache/traces.0.system-plplot EMBOSS-6.2.0/autom4te.cache/traces.0 --- EMBOSS-6.2.0/autom4te.cache/traces.0.system-plplot 2010-04-07 12:06:27.507735087 -0400 +++ EMBOSS-6.2.0/autom4te.cache/traces.0 2010-04-07 12:06:47.250735085 -0400 @@ -3,9 +3,10 @@ m4trace:aclocal.m4:8902: -1- m4_include( m4trace:aclocal.m4:8903: -1- m4_include([m4/java.m4]) m4trace:aclocal.m4:8904: -1- m4_include([m4/lf_x11.m4]) m4trace:aclocal.m4:8905: -1- m4_include([m4/mysql.m4]) -m4trace:aclocal.m4:8906: -1- m4_include([m4/pngdriver.m4]) -m4trace:aclocal.m4:8907: -1- m4_include([m4/postgresql.m4]) -m4trace:aclocal.m4:8908: -1- m4_include([m4/sgi.m4]) +m4trace:aclocal.m4:8906: -1- m4_include([m4/plplot.m4]) +m4trace:aclocal.m4:8907: -1- m4_include([m4/pngdriver.m4]) +m4trace:aclocal.m4:8908: -1- m4_include([m4/postgresql.m4]) +m4trace:aclocal.m4:8909: -1- m4_include([m4/sgi.m4]) m4trace:configure.in:8: -1- AC_INIT([ajax/core/ajmath.c]) m4trace:configure.in:8: -1- m4_pattern_forbid([^_?A[CHUM]_]) m4trace:configure.in:8: -1- m4_pattern_forbid([_AC_]) @@ -669,170 +670,220 @@ m4trace:configure.in:269: -1- m4_pattern m4trace:configure.in:269: -1- AC_SUBST([JAVA_OK]) m4trace:configure.in:269: -1- AC_SUBST_TRACE([JAVA_OK]) m4trace:configure.in:269: -1- m4_pattern_allow([^JAVA_OK$]) -m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLD_png]) -m4trace:configure.in:271: -1- m4_pattern_allow([^PLD_png$]) -m4trace:configure.in:271: -1- AM_CONDITIONAL([AMPNG], [true]) -m4trace:configure.in:271: -1- AC_SUBST([AMPNG_TRUE]) -m4trace:configure.in:271: -1- AC_SUBST_TRACE([AMPNG_TRUE]) -m4trace:configure.in:271: -1- m4_pattern_allow([^AMPNG_TRUE$]) -m4trace:configure.in:271: -1- AC_SUBST([AMPNG_FALSE]) -m4trace:configure.in:271: -1- AC_SUBST_TRACE([AMPNG_FALSE]) -m4trace:configure.in:271: -1- m4_pattern_allow([^AMPNG_FALSE$]) -m4trace:configure.in:271: -1- _AM_SUBST_NOTMAKE([AMPNG_TRUE]) -m4trace:configure.in:271: -1- _AM_SUBST_NOTMAKE([AMPNG_FALSE]) -m4trace:configure.in:271: -1- AM_CONDITIONAL([AMPNG], [false]) -m4trace:configure.in:271: -1- AC_SUBST([AMPNG_TRUE]) -m4trace:configure.in:271: -1- AC_SUBST_TRACE([AMPNG_TRUE]) -m4trace:configure.in:271: -1- m4_pattern_allow([^AMPNG_TRUE$]) -m4trace:configure.in:271: -1- AC_SUBST([AMPNG_FALSE]) -m4trace:configure.in:271: -1- AC_SUBST_TRACE([AMPNG_FALSE]) -m4trace:configure.in:271: -1- m4_pattern_allow([^AMPNG_FALSE$]) -m4trace:configure.in:271: -1- _AM_SUBST_NOTMAKE([AMPNG_TRUE]) -m4trace:configure.in:271: -1- _AM_SUBST_NOTMAKE([AMPNG_FALSE]) -m4trace:configure.in:275: -2- _m4_warn([obsolete], [The macro `AC_HELP_STRING' is obsolete. +m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H]) +m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_H$]) +m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */ +@%:@undef PLPLOT_H]) +m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H]) +m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOTP_H$]) +m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */ +@%:@undef PLPLOTP_H]) +m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H]) +m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_H$]) +m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */ +@%:@undef PLPLOT_H]) +m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H]) +m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOTP_H$]) +m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */ +@%:@undef PLPLOTP_H]) +m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H]) +m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_H$]) +m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */ +@%:@undef PLPLOT_H]) +m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H]) +m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOTP_H$]) +m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */ +@%:@undef PLPLOTP_H]) +m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H]) +m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_H$]) +m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */ +@%:@undef PLPLOT_H]) +m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H]) +m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOTP_H$]) +m4trace:configure.in:271: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */ +@%:@undef PLPLOTP_H]) +m4trace:configure.in:271: -1- AH_OUTPUT([HAVE_LIBPLPLOTD], [/* Define to 1 if you have the `plplotd\' library (-lplplotd). */ +@%:@undef HAVE_LIBPLPLOTD]) +m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([HAVE_LIBPLPLOTD]) +m4trace:configure.in:271: -1- m4_pattern_allow([^HAVE_LIBPLPLOTD$]) +m4trace:configure.in:271: -1- AH_OUTPUT([HAVE_LIBPLPLOTD], [/* Define to 1 if you have the `plplotd\' library (-lplplotd). */ +@%:@undef HAVE_LIBPLPLOTD]) +m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([HAVE_LIBPLPLOTD]) +m4trace:configure.in:271: -1- m4_pattern_allow([^HAVE_LIBPLPLOTD$]) +m4trace:configure.in:271: -1- AC_SUBST([PLPLOT_CFLAGS]) +m4trace:configure.in:271: -1- AC_SUBST_TRACE([PLPLOT_CFLAGS]) +m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_CFLAGS$]) +m4trace:configure.in:271: -1- AC_SUBST([PLPLOT_LIBS]) +m4trace:configure.in:271: -1- AC_SUBST_TRACE([PLPLOT_LIBS]) +m4trace:configure.in:271: -1- m4_pattern_allow([^PLPLOT_LIBS$]) +m4trace:configure.in:271: -1- AC_DEFINE_TRACE_LITERAL([HAVE_PLPLOT]) +m4trace:configure.in:271: -1- m4_pattern_allow([^HAVE_PLPLOT$]) +m4trace:configure.in:271: -1- AH_OUTPUT([HAVE_PLPLOT], [/* Define if you have the PLPlot libraries and header files. */ +@%:@undef HAVE_PLPLOT]) +m4trace:configure.in:272: -1- AC_DEFINE_TRACE_LITERAL([PLD_png]) +m4trace:configure.in:272: -1- m4_pattern_allow([^PLD_png$]) +m4trace:configure.in:272: -1- AM_CONDITIONAL([AMPNG], [true]) +m4trace:configure.in:272: -1- AC_SUBST([AMPNG_TRUE]) +m4trace:configure.in:272: -1- AC_SUBST_TRACE([AMPNG_TRUE]) +m4trace:configure.in:272: -1- m4_pattern_allow([^AMPNG_TRUE$]) +m4trace:configure.in:272: -1- AC_SUBST([AMPNG_FALSE]) +m4trace:configure.in:272: -1- AC_SUBST_TRACE([AMPNG_FALSE]) +m4trace:configure.in:272: -1- m4_pattern_allow([^AMPNG_FALSE$]) +m4trace:configure.in:272: -1- _AM_SUBST_NOTMAKE([AMPNG_TRUE]) +m4trace:configure.in:272: -1- _AM_SUBST_NOTMAKE([AMPNG_FALSE]) +m4trace:configure.in:272: -1- AM_CONDITIONAL([AMPNG], [false]) +m4trace:configure.in:272: -1- AC_SUBST([AMPNG_TRUE]) +m4trace:configure.in:272: -1- AC_SUBST_TRACE([AMPNG_TRUE]) +m4trace:configure.in:272: -1- m4_pattern_allow([^AMPNG_TRUE$]) +m4trace:configure.in:272: -1- AC_SUBST([AMPNG_FALSE]) +m4trace:configure.in:272: -1- AC_SUBST_TRACE([AMPNG_FALSE]) +m4trace:configure.in:272: -1- m4_pattern_allow([^AMPNG_FALSE$]) +m4trace:configure.in:272: -1- _AM_SUBST_NOTMAKE([AMPNG_TRUE]) +m4trace:configure.in:272: -1- _AM_SUBST_NOTMAKE([AMPNG_FALSE]) +m4trace:configure.in:276: -2- _m4_warn([obsolete], [The macro `AC_HELP_STRING' is obsolete. You should run autoupdate.], [../../lib/autoconf/general.m4:209: AC_HELP_STRING is expanded from... m4/mysql.m4:51: AX_LIB_MYSQL is expanded from... -configure.in:275: the top level]) -m4trace:configure.in:275: -1- AC_SUBST([MYSQL_CONFIG]) -m4trace:configure.in:275: -1- AC_SUBST_TRACE([MYSQL_CONFIG]) -m4trace:configure.in:275: -1- m4_pattern_allow([^MYSQL_CONFIG$]) -m4trace:configure.in:275: -1- AC_DEFINE_TRACE_LITERAL([HAVE_MYSQL]) -m4trace:configure.in:275: -1- m4_pattern_allow([^HAVE_MYSQL$]) -m4trace:configure.in:275: -1- AH_OUTPUT([HAVE_MYSQL], [/* Define to 1 if MySQL libraries are available */ +configure.in:276: the top level]) +m4trace:configure.in:276: -1- AC_SUBST([MYSQL_CONFIG]) +m4trace:configure.in:276: -1- AC_SUBST_TRACE([MYSQL_CONFIG]) +m4trace:configure.in:276: -1- m4_pattern_allow([^MYSQL_CONFIG$]) +m4trace:configure.in:276: -1- AC_DEFINE_TRACE_LITERAL([HAVE_MYSQL]) +m4trace:configure.in:276: -1- m4_pattern_allow([^HAVE_MYSQL$]) +m4trace:configure.in:276: -1- AH_OUTPUT([HAVE_MYSQL], [/* Define to 1 if MySQL libraries are available */ @%:@undef HAVE_MYSQL]) -m4trace:configure.in:275: -1- AC_SUBST([MYSQL_VERSION]) -m4trace:configure.in:275: -1- AC_SUBST_TRACE([MYSQL_VERSION]) -m4trace:configure.in:275: -1- m4_pattern_allow([^MYSQL_VERSION$]) -m4trace:configure.in:275: -1- AC_SUBST([MYSQL_CFLAGS]) -m4trace:configure.in:275: -1- AC_SUBST_TRACE([MYSQL_CFLAGS]) -m4trace:configure.in:275: -1- m4_pattern_allow([^MYSQL_CFLAGS$]) -m4trace:configure.in:275: -1- AC_SUBST([MYSQL_LDFLAGS]) -m4trace:configure.in:275: -1- AC_SUBST_TRACE([MYSQL_LDFLAGS]) -m4trace:configure.in:275: -1- m4_pattern_allow([^MYSQL_LDFLAGS$]) -m4trace:configure.in:276: -2- _m4_warn([obsolete], [The macro `AC_HELP_STRING' is obsolete. +m4trace:configure.in:276: -1- AC_SUBST([MYSQL_VERSION]) +m4trace:configure.in:276: -1- AC_SUBST_TRACE([MYSQL_VERSION]) +m4trace:configure.in:276: -1- m4_pattern_allow([^MYSQL_VERSION$]) +m4trace:configure.in:276: -1- AC_SUBST([MYSQL_CFLAGS]) +m4trace:configure.in:276: -1- AC_SUBST_TRACE([MYSQL_CFLAGS]) +m4trace:configure.in:276: -1- m4_pattern_allow([^MYSQL_CFLAGS$]) +m4trace:configure.in:276: -1- AC_SUBST([MYSQL_LDFLAGS]) +m4trace:configure.in:276: -1- AC_SUBST_TRACE([MYSQL_LDFLAGS]) +m4trace:configure.in:276: -1- m4_pattern_allow([^MYSQL_LDFLAGS$]) +m4trace:configure.in:277: -2- _m4_warn([obsolete], [The macro `AC_HELP_STRING' is obsolete. You should run autoupdate.], [../../lib/autoconf/general.m4:209: AC_HELP_STRING is expanded from... m4/postgresql.m4:48: AX_LIB_POSTGRESQL is expanded from... -configure.in:276: the top level]) -m4trace:configure.in:276: -1- AC_SUBST([PG_CONFIG]) -m4trace:configure.in:276: -1- AC_SUBST_TRACE([PG_CONFIG]) -m4trace:configure.in:276: -1- m4_pattern_allow([^PG_CONFIG$]) -m4trace:configure.in:276: -1- AC_DEFINE_TRACE_LITERAL([HAVE_POSTGRESQL]) -m4trace:configure.in:276: -1- m4_pattern_allow([^HAVE_POSTGRESQL$]) -m4trace:configure.in:276: -1- AH_OUTPUT([HAVE_POSTGRESQL], [/* Define to 1 if PostgreSQL libraries are available */ +configure.in:277: the top level]) +m4trace:configure.in:277: -1- AC_SUBST([PG_CONFIG]) +m4trace:configure.in:277: -1- AC_SUBST_TRACE([PG_CONFIG]) +m4trace:configure.in:277: -1- m4_pattern_allow([^PG_CONFIG$]) +m4trace:configure.in:277: -1- AC_DEFINE_TRACE_LITERAL([HAVE_POSTGRESQL]) +m4trace:configure.in:277: -1- m4_pattern_allow([^HAVE_POSTGRESQL$]) +m4trace:configure.in:277: -1- AH_OUTPUT([HAVE_POSTGRESQL], [/* Define to 1 if PostgreSQL libraries are available */ @%:@undef HAVE_POSTGRESQL]) -m4trace:configure.in:276: -1- AC_SUBST([POSTGRESQL_VERSION]) -m4trace:configure.in:276: -1- AC_SUBST_TRACE([POSTGRESQL_VERSION]) -m4trace:configure.in:276: -1- m4_pattern_allow([^POSTGRESQL_VERSION$]) -m4trace:configure.in:276: -1- AC_SUBST([POSTGRESQL_CFLAGS]) -m4trace:configure.in:276: -1- AC_SUBST_TRACE([POSTGRESQL_CFLAGS]) -m4trace:configure.in:276: -1- m4_pattern_allow([^POSTGRESQL_CFLAGS$]) -m4trace:configure.in:276: -1- AC_SUBST([POSTGRESQL_LDFLAGS]) -m4trace:configure.in:276: -1- AC_SUBST_TRACE([POSTGRESQL_LDFLAGS]) -m4trace:configure.in:276: -1- m4_pattern_allow([^POSTGRESQL_LDFLAGS$]) -m4trace:configure.in:287: -1- AC_SUBST([javac_in_path]) -m4trace:configure.in:287: -1- AC_SUBST_TRACE([javac_in_path]) -m4trace:configure.in:287: -1- m4_pattern_allow([^javac_in_path$]) -m4trace:configure.in:288: -1- AC_SUBST([ant_in_path]) -m4trace:configure.in:288: -1- AC_SUBST_TRACE([ant_in_path]) -m4trace:configure.in:288: -1- m4_pattern_allow([^ant_in_path$]) -m4trace:configure.in:289: -1- AM_CONDITIONAL([EHAVEANT], [test "$ant_in_path" = "true" && "$javac_in_path" = "true"]) -m4trace:configure.in:289: -1- AC_SUBST([EHAVEANT_TRUE]) -m4trace:configure.in:289: -1- AC_SUBST_TRACE([EHAVEANT_TRUE]) -m4trace:configure.in:289: -1- m4_pattern_allow([^EHAVEANT_TRUE$]) -m4trace:configure.in:289: -1- AC_SUBST([EHAVEANT_FALSE]) -m4trace:configure.in:289: -1- AC_SUBST_TRACE([EHAVEANT_FALSE]) -m4trace:configure.in:289: -1- m4_pattern_allow([^EHAVEANT_FALSE$]) -m4trace:configure.in:289: -1- _AM_SUBST_NOTMAKE([EHAVEANT_TRUE]) -m4trace:configure.in:289: -1- _AM_SUBST_NOTMAKE([EHAVEANT_FALSE]) -m4trace:configure.in:290: -1- AC_SUBST([EHAVEANT]) -m4trace:configure.in:290: -1- AC_SUBST_TRACE([EHAVEANT]) -m4trace:configure.in:290: -1- m4_pattern_allow([^EHAVEANT$]) -m4trace:configure.in:423: -1- AC_SUBST([WARN_CFLAGS]) -m4trace:configure.in:423: -1- AC_SUBST_TRACE([WARN_CFLAGS]) -m4trace:configure.in:423: -1- m4_pattern_allow([^WARN_CFLAGS$]) -m4trace:configure.in:432: -1- AM_CONDITIONAL([WARNINGS], [test "$have_warnings" = "yes"]) -m4trace:configure.in:432: -1- AC_SUBST([WARNINGS_TRUE]) -m4trace:configure.in:432: -1- AC_SUBST_TRACE([WARNINGS_TRUE]) -m4trace:configure.in:432: -1- m4_pattern_allow([^WARNINGS_TRUE$]) -m4trace:configure.in:432: -1- AC_SUBST([WARNINGS_FALSE]) -m4trace:configure.in:432: -1- AC_SUBST_TRACE([WARNINGS_FALSE]) -m4trace:configure.in:432: -1- m4_pattern_allow([^WARNINGS_FALSE$]) -m4trace:configure.in:432: -1- _AM_SUBST_NOTMAKE([WARNINGS_TRUE]) -m4trace:configure.in:432: -1- _AM_SUBST_NOTMAKE([WARNINGS_FALSE]) -m4trace:configure.in:433: -1- AC_SUBST([WARNINGS]) -m4trace:configure.in:433: -1- AC_SUBST_TRACE([WARNINGS]) -m4trace:configure.in:433: -1- m4_pattern_allow([^WARNINGS$]) -m4trace:configure.in:442: -1- AM_CONDITIONAL([PURIFY], [test "${enable_purify}" = "yes"]) -m4trace:configure.in:442: -1- AC_SUBST([PURIFY_TRUE]) -m4trace:configure.in:442: -1- AC_SUBST_TRACE([PURIFY_TRUE]) -m4trace:configure.in:442: -1- m4_pattern_allow([^PURIFY_TRUE$]) -m4trace:configure.in:442: -1- AC_SUBST([PURIFY_FALSE]) -m4trace:configure.in:442: -1- AC_SUBST_TRACE([PURIFY_FALSE]) -m4trace:configure.in:442: -1- m4_pattern_allow([^PURIFY_FALSE$]) -m4trace:configure.in:442: -1- _AM_SUBST_NOTMAKE([PURIFY_TRUE]) -m4trace:configure.in:442: -1- _AM_SUBST_NOTMAKE([PURIFY_FALSE]) -m4trace:configure.in:446: -1- AC_SUBST([DEVWARN_CFLAGS]) -m4trace:configure.in:446: -1- AC_SUBST_TRACE([DEVWARN_CFLAGS]) -m4trace:configure.in:446: -1- m4_pattern_allow([^DEVWARN_CFLAGS$]) -m4trace:configure.in:499: -1- AM_CONDITIONAL([DEVWARNINGS], [test "$have_devwarnings" = "yes"]) -m4trace:configure.in:499: -1- AC_SUBST([DEVWARNINGS_TRUE]) -m4trace:configure.in:499: -1- AC_SUBST_TRACE([DEVWARNINGS_TRUE]) -m4trace:configure.in:499: -1- m4_pattern_allow([^DEVWARNINGS_TRUE$]) -m4trace:configure.in:499: -1- AC_SUBST([DEVWARNINGS_FALSE]) -m4trace:configure.in:499: -1- AC_SUBST_TRACE([DEVWARNINGS_FALSE]) -m4trace:configure.in:499: -1- m4_pattern_allow([^DEVWARNINGS_FALSE$]) -m4trace:configure.in:499: -1- _AM_SUBST_NOTMAKE([DEVWARNINGS_TRUE]) -m4trace:configure.in:499: -1- _AM_SUBST_NOTMAKE([DEVWARNINGS_FALSE]) -m4trace:configure.in:500: -1- AC_SUBST([DEVWARNINGS]) -m4trace:configure.in:500: -1- AC_SUBST_TRACE([DEVWARNINGS]) -m4trace:configure.in:500: -1- m4_pattern_allow([^DEVWARNINGS$]) -m4trace:configure.in:516: -1- AM_CONDITIONAL([ISCYGWIN], [test "$platform_cygwin" = "yes"]) -m4trace:configure.in:516: -1- AC_SUBST([ISCYGWIN_TRUE]) -m4trace:configure.in:516: -1- AC_SUBST_TRACE([ISCYGWIN_TRUE]) -m4trace:configure.in:516: -1- m4_pattern_allow([^ISCYGWIN_TRUE$]) -m4trace:configure.in:516: -1- AC_SUBST([ISCYGWIN_FALSE]) -m4trace:configure.in:516: -1- AC_SUBST_TRACE([ISCYGWIN_FALSE]) -m4trace:configure.in:516: -1- m4_pattern_allow([^ISCYGWIN_FALSE$]) -m4trace:configure.in:516: -1- _AM_SUBST_NOTMAKE([ISCYGWIN_TRUE]) -m4trace:configure.in:516: -1- _AM_SUBST_NOTMAKE([ISCYGWIN_FALSE]) -m4trace:configure.in:517: -1- AC_SUBST([ISCYGWIN]) -m4trace:configure.in:517: -1- AC_SUBST_TRACE([ISCYGWIN]) -m4trace:configure.in:517: -1- m4_pattern_allow([^ISCYGWIN$]) -m4trace:configure.in:524: -1- AM_CONDITIONAL([ISAIXIA64], [test "`uname`" = "AIX"]) -m4trace:configure.in:524: -1- AC_SUBST([ISAIXIA64_TRUE]) -m4trace:configure.in:524: -1- AC_SUBST_TRACE([ISAIXIA64_TRUE]) -m4trace:configure.in:524: -1- m4_pattern_allow([^ISAIXIA64_TRUE$]) -m4trace:configure.in:524: -1- AC_SUBST([ISAIXIA64_FALSE]) -m4trace:configure.in:524: -1- AC_SUBST_TRACE([ISAIXIA64_FALSE]) -m4trace:configure.in:524: -1- m4_pattern_allow([^ISAIXIA64_FALSE$]) -m4trace:configure.in:524: -1- _AM_SUBST_NOTMAKE([ISAIXIA64_TRUE]) -m4trace:configure.in:524: -1- _AM_SUBST_NOTMAKE([ISAIXIA64_FALSE]) -m4trace:configure.in:525: -1- AM_CONDITIONAL([ISSHARED], [test "${enable_shared}" = "yes"]) -m4trace:configure.in:525: -1- AC_SUBST([ISSHARED_TRUE]) -m4trace:configure.in:525: -1- AC_SUBST_TRACE([ISSHARED_TRUE]) -m4trace:configure.in:525: -1- m4_pattern_allow([^ISSHARED_TRUE$]) -m4trace:configure.in:525: -1- AC_SUBST([ISSHARED_FALSE]) -m4trace:configure.in:525: -1- AC_SUBST_TRACE([ISSHARED_FALSE]) -m4trace:configure.in:525: -1- m4_pattern_allow([^ISSHARED_FALSE$]) -m4trace:configure.in:525: -1- _AM_SUBST_NOTMAKE([ISSHARED_TRUE]) -m4trace:configure.in:525: -1- _AM_SUBST_NOTMAKE([ISSHARED_FALSE]) -m4trace:configure.in:526: -1- AC_SUBST([ISAIXIA64]) -m4trace:configure.in:526: -1- AC_SUBST_TRACE([ISAIXIA64]) -m4trace:configure.in:526: -1- m4_pattern_allow([^ISAIXIA64$]) -m4trace:configure.in:545: -1- AM_CONDITIONAL([NEEDAJAX], [test "$needajax" = "yes"]) -m4trace:configure.in:545: -1- AC_SUBST([NEEDAJAX_TRUE]) -m4trace:configure.in:545: -1- AC_SUBST_TRACE([NEEDAJAX_TRUE]) -m4trace:configure.in:545: -1- m4_pattern_allow([^NEEDAJAX_TRUE$]) -m4trace:configure.in:545: -1- AC_SUBST([NEEDAJAX_FALSE]) -m4trace:configure.in:545: -1- AC_SUBST_TRACE([NEEDAJAX_FALSE]) -m4trace:configure.in:545: -1- m4_pattern_allow([^NEEDAJAX_FALSE$]) -m4trace:configure.in:545: -1- _AM_SUBST_NOTMAKE([NEEDAJAX_TRUE]) -m4trace:configure.in:545: -1- _AM_SUBST_NOTMAKE([NEEDAJAX_FALSE]) -m4trace:configure.in:546: -1- AC_SUBST([NEEDAJAX]) -m4trace:configure.in:546: -1- AC_SUBST_TRACE([NEEDAJAX]) -m4trace:configure.in:546: -1- m4_pattern_allow([^NEEDAJAX$]) -m4trace:configure.in:589: -1- AC_CONFIG_FILES([plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile -ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile +m4trace:configure.in:277: -1- AC_SUBST([POSTGRESQL_VERSION]) +m4trace:configure.in:277: -1- AC_SUBST_TRACE([POSTGRESQL_VERSION]) +m4trace:configure.in:277: -1- m4_pattern_allow([^POSTGRESQL_VERSION$]) +m4trace:configure.in:277: -1- AC_SUBST([POSTGRESQL_CFLAGS]) +m4trace:configure.in:277: -1- AC_SUBST_TRACE([POSTGRESQL_CFLAGS]) +m4trace:configure.in:277: -1- m4_pattern_allow([^POSTGRESQL_CFLAGS$]) +m4trace:configure.in:277: -1- AC_SUBST([POSTGRESQL_LDFLAGS]) +m4trace:configure.in:277: -1- AC_SUBST_TRACE([POSTGRESQL_LDFLAGS]) +m4trace:configure.in:277: -1- m4_pattern_allow([^POSTGRESQL_LDFLAGS$]) +m4trace:configure.in:288: -1- AC_SUBST([javac_in_path]) +m4trace:configure.in:288: -1- AC_SUBST_TRACE([javac_in_path]) +m4trace:configure.in:288: -1- m4_pattern_allow([^javac_in_path$]) +m4trace:configure.in:289: -1- AC_SUBST([ant_in_path]) +m4trace:configure.in:289: -1- AC_SUBST_TRACE([ant_in_path]) +m4trace:configure.in:289: -1- m4_pattern_allow([^ant_in_path$]) +m4trace:configure.in:290: -1- AM_CONDITIONAL([EHAVEANT], [test "$ant_in_path" = "true" && "$javac_in_path" = "true"]) +m4trace:configure.in:290: -1- AC_SUBST([EHAVEANT_TRUE]) +m4trace:configure.in:290: -1- AC_SUBST_TRACE([EHAVEANT_TRUE]) +m4trace:configure.in:290: -1- m4_pattern_allow([^EHAVEANT_TRUE$]) +m4trace:configure.in:290: -1- AC_SUBST([EHAVEANT_FALSE]) +m4trace:configure.in:290: -1- AC_SUBST_TRACE([EHAVEANT_FALSE]) +m4trace:configure.in:290: -1- m4_pattern_allow([^EHAVEANT_FALSE$]) +m4trace:configure.in:290: -1- _AM_SUBST_NOTMAKE([EHAVEANT_TRUE]) +m4trace:configure.in:290: -1- _AM_SUBST_NOTMAKE([EHAVEANT_FALSE]) +m4trace:configure.in:291: -1- AC_SUBST([EHAVEANT]) +m4trace:configure.in:291: -1- AC_SUBST_TRACE([EHAVEANT]) +m4trace:configure.in:291: -1- m4_pattern_allow([^EHAVEANT$]) +m4trace:configure.in:424: -1- AC_SUBST([WARN_CFLAGS]) +m4trace:configure.in:424: -1- AC_SUBST_TRACE([WARN_CFLAGS]) +m4trace:configure.in:424: -1- m4_pattern_allow([^WARN_CFLAGS$]) +m4trace:configure.in:433: -1- AM_CONDITIONAL([WARNINGS], [test "$have_warnings" = "yes"]) +m4trace:configure.in:433: -1- AC_SUBST([WARNINGS_TRUE]) +m4trace:configure.in:433: -1- AC_SUBST_TRACE([WARNINGS_TRUE]) +m4trace:configure.in:433: -1- m4_pattern_allow([^WARNINGS_TRUE$]) +m4trace:configure.in:433: -1- AC_SUBST([WARNINGS_FALSE]) +m4trace:configure.in:433: -1- AC_SUBST_TRACE([WARNINGS_FALSE]) +m4trace:configure.in:433: -1- m4_pattern_allow([^WARNINGS_FALSE$]) +m4trace:configure.in:433: -1- _AM_SUBST_NOTMAKE([WARNINGS_TRUE]) +m4trace:configure.in:433: -1- _AM_SUBST_NOTMAKE([WARNINGS_FALSE]) +m4trace:configure.in:434: -1- AC_SUBST([WARNINGS]) +m4trace:configure.in:434: -1- AC_SUBST_TRACE([WARNINGS]) +m4trace:configure.in:434: -1- m4_pattern_allow([^WARNINGS$]) +m4trace:configure.in:443: -1- AM_CONDITIONAL([PURIFY], [test "${enable_purify}" = "yes"]) +m4trace:configure.in:443: -1- AC_SUBST([PURIFY_TRUE]) +m4trace:configure.in:443: -1- AC_SUBST_TRACE([PURIFY_TRUE]) +m4trace:configure.in:443: -1- m4_pattern_allow([^PURIFY_TRUE$]) +m4trace:configure.in:443: -1- AC_SUBST([PURIFY_FALSE]) +m4trace:configure.in:443: -1- AC_SUBST_TRACE([PURIFY_FALSE]) +m4trace:configure.in:443: -1- m4_pattern_allow([^PURIFY_FALSE$]) +m4trace:configure.in:443: -1- _AM_SUBST_NOTMAKE([PURIFY_TRUE]) +m4trace:configure.in:443: -1- _AM_SUBST_NOTMAKE([PURIFY_FALSE]) +m4trace:configure.in:447: -1- AC_SUBST([DEVWARN_CFLAGS]) +m4trace:configure.in:447: -1- AC_SUBST_TRACE([DEVWARN_CFLAGS]) +m4trace:configure.in:447: -1- m4_pattern_allow([^DEVWARN_CFLAGS$]) +m4trace:configure.in:500: -1- AM_CONDITIONAL([DEVWARNINGS], [test "$have_devwarnings" = "yes"]) +m4trace:configure.in:500: -1- AC_SUBST([DEVWARNINGS_TRUE]) +m4trace:configure.in:500: -1- AC_SUBST_TRACE([DEVWARNINGS_TRUE]) +m4trace:configure.in:500: -1- m4_pattern_allow([^DEVWARNINGS_TRUE$]) +m4trace:configure.in:500: -1- AC_SUBST([DEVWARNINGS_FALSE]) +m4trace:configure.in:500: -1- AC_SUBST_TRACE([DEVWARNINGS_FALSE]) +m4trace:configure.in:500: -1- m4_pattern_allow([^DEVWARNINGS_FALSE$]) +m4trace:configure.in:500: -1- _AM_SUBST_NOTMAKE([DEVWARNINGS_TRUE]) +m4trace:configure.in:500: -1- _AM_SUBST_NOTMAKE([DEVWARNINGS_FALSE]) +m4trace:configure.in:501: -1- AC_SUBST([DEVWARNINGS]) +m4trace:configure.in:501: -1- AC_SUBST_TRACE([DEVWARNINGS]) +m4trace:configure.in:501: -1- m4_pattern_allow([^DEVWARNINGS$]) +m4trace:configure.in:517: -1- AM_CONDITIONAL([ISCYGWIN], [test "$platform_cygwin" = "yes"]) +m4trace:configure.in:517: -1- AC_SUBST([ISCYGWIN_TRUE]) +m4trace:configure.in:517: -1- AC_SUBST_TRACE([ISCYGWIN_TRUE]) +m4trace:configure.in:517: -1- m4_pattern_allow([^ISCYGWIN_TRUE$]) +m4trace:configure.in:517: -1- AC_SUBST([ISCYGWIN_FALSE]) +m4trace:configure.in:517: -1- AC_SUBST_TRACE([ISCYGWIN_FALSE]) +m4trace:configure.in:517: -1- m4_pattern_allow([^ISCYGWIN_FALSE$]) +m4trace:configure.in:517: -1- _AM_SUBST_NOTMAKE([ISCYGWIN_TRUE]) +m4trace:configure.in:517: -1- _AM_SUBST_NOTMAKE([ISCYGWIN_FALSE]) +m4trace:configure.in:518: -1- AC_SUBST([ISCYGWIN]) +m4trace:configure.in:518: -1- AC_SUBST_TRACE([ISCYGWIN]) +m4trace:configure.in:518: -1- m4_pattern_allow([^ISCYGWIN$]) +m4trace:configure.in:525: -1- AM_CONDITIONAL([ISAIXIA64], [test "`uname`" = "AIX"]) +m4trace:configure.in:525: -1- AC_SUBST([ISAIXIA64_TRUE]) +m4trace:configure.in:525: -1- AC_SUBST_TRACE([ISAIXIA64_TRUE]) +m4trace:configure.in:525: -1- m4_pattern_allow([^ISAIXIA64_TRUE$]) +m4trace:configure.in:525: -1- AC_SUBST([ISAIXIA64_FALSE]) +m4trace:configure.in:525: -1- AC_SUBST_TRACE([ISAIXIA64_FALSE]) +m4trace:configure.in:525: -1- m4_pattern_allow([^ISAIXIA64_FALSE$]) +m4trace:configure.in:525: -1- _AM_SUBST_NOTMAKE([ISAIXIA64_TRUE]) +m4trace:configure.in:525: -1- _AM_SUBST_NOTMAKE([ISAIXIA64_FALSE]) +m4trace:configure.in:526: -1- AM_CONDITIONAL([ISSHARED], [test "${enable_shared}" = "yes"]) +m4trace:configure.in:526: -1- AC_SUBST([ISSHARED_TRUE]) +m4trace:configure.in:526: -1- AC_SUBST_TRACE([ISSHARED_TRUE]) +m4trace:configure.in:526: -1- m4_pattern_allow([^ISSHARED_TRUE$]) +m4trace:configure.in:526: -1- AC_SUBST([ISSHARED_FALSE]) +m4trace:configure.in:526: -1- AC_SUBST_TRACE([ISSHARED_FALSE]) +m4trace:configure.in:526: -1- m4_pattern_allow([^ISSHARED_FALSE$]) +m4trace:configure.in:526: -1- _AM_SUBST_NOTMAKE([ISSHARED_TRUE]) +m4trace:configure.in:526: -1- _AM_SUBST_NOTMAKE([ISSHARED_FALSE]) +m4trace:configure.in:527: -1- AC_SUBST([ISAIXIA64]) +m4trace:configure.in:527: -1- AC_SUBST_TRACE([ISAIXIA64]) +m4trace:configure.in:527: -1- m4_pattern_allow([^ISAIXIA64$]) +m4trace:configure.in:546: -1- AM_CONDITIONAL([NEEDAJAX], [test "$needajax" = "yes"]) +m4trace:configure.in:546: -1- AC_SUBST([NEEDAJAX_TRUE]) +m4trace:configure.in:546: -1- AC_SUBST_TRACE([NEEDAJAX_TRUE]) +m4trace:configure.in:546: -1- m4_pattern_allow([^NEEDAJAX_TRUE$]) +m4trace:configure.in:546: -1- AC_SUBST([NEEDAJAX_FALSE]) +m4trace:configure.in:546: -1- AC_SUBST_TRACE([NEEDAJAX_FALSE]) +m4trace:configure.in:546: -1- m4_pattern_allow([^NEEDAJAX_FALSE$]) +m4trace:configure.in:546: -1- _AM_SUBST_NOTMAKE([NEEDAJAX_TRUE]) +m4trace:configure.in:546: -1- _AM_SUBST_NOTMAKE([NEEDAJAX_FALSE]) +m4trace:configure.in:547: -1- AC_SUBST([NEEDAJAX]) +m4trace:configure.in:547: -1- AC_SUBST_TRACE([NEEDAJAX]) +m4trace:configure.in:547: -1- m4_pattern_allow([^NEEDAJAX$]) +m4trace:configure.in:590: -1- AC_CONFIG_FILES([nucleus/Makefile ajax/Makefile +ajax/expat/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile @@ -878,33 +929,33 @@ jemboss/org/emboss/jemboss/editor/Makefi jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile]) -m4trace:configure.in:589: -1- _m4_warn([obsolete], [AC_OUTPUT should be used without arguments. +m4trace:configure.in:590: -1- _m4_warn([obsolete], [AC_OUTPUT should be used without arguments. You should run autoupdate.], []) -m4trace:configure.in:589: -1- AC_SUBST([LIB@&t@OBJS], [$ac_libobjs]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([LIB@&t@OBJS]) -m4trace:configure.in:589: -1- m4_pattern_allow([^LIB@&t@OBJS$]) -m4trace:configure.in:589: -1- AC_SUBST([LTLIBOBJS], [$ac_ltlibobjs]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([LTLIBOBJS]) -m4trace:configure.in:589: -1- m4_pattern_allow([^LTLIBOBJS$]) -m4trace:configure.in:589: -1- AM_CONDITIONAL([am__EXEEXT], [test -n "$EXEEXT"]) -m4trace:configure.in:589: -1- AC_SUBST([am__EXEEXT_TRUE]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([am__EXEEXT_TRUE]) -m4trace:configure.in:589: -1- m4_pattern_allow([^am__EXEEXT_TRUE$]) -m4trace:configure.in:589: -1- AC_SUBST([am__EXEEXT_FALSE]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([am__EXEEXT_FALSE]) -m4trace:configure.in:589: -1- m4_pattern_allow([^am__EXEEXT_FALSE$]) -m4trace:configure.in:589: -1- _AM_SUBST_NOTMAKE([am__EXEEXT_TRUE]) -m4trace:configure.in:589: -1- _AM_SUBST_NOTMAKE([am__EXEEXT_FALSE]) -m4trace:configure.in:589: -1- _m4_warn([obsolete], [AC_C_BIGENDIAN should be used with AC_CONFIG_HEADERS], []) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([top_builddir]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([top_build_prefix]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([srcdir]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([abs_srcdir]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([top_srcdir]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([abs_top_srcdir]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([builddir]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([abs_builddir]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([abs_top_builddir]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([INSTALL]) -m4trace:configure.in:589: -1- AC_SUBST_TRACE([MKDIR_P]) -m4trace:configure.in:589: -1- AC_REQUIRE_AUX_FILE([ltmain.sh]) +m4trace:configure.in:590: -1- AC_SUBST([LIB@&t@OBJS], [$ac_libobjs]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([LIB@&t@OBJS]) +m4trace:configure.in:590: -1- m4_pattern_allow([^LIB@&t@OBJS$]) +m4trace:configure.in:590: -1- AC_SUBST([LTLIBOBJS], [$ac_ltlibobjs]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([LTLIBOBJS]) +m4trace:configure.in:590: -1- m4_pattern_allow([^LTLIBOBJS$]) +m4trace:configure.in:590: -1- AM_CONDITIONAL([am__EXEEXT], [test -n "$EXEEXT"]) +m4trace:configure.in:590: -1- AC_SUBST([am__EXEEXT_TRUE]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([am__EXEEXT_TRUE]) +m4trace:configure.in:590: -1- m4_pattern_allow([^am__EXEEXT_TRUE$]) +m4trace:configure.in:590: -1- AC_SUBST([am__EXEEXT_FALSE]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([am__EXEEXT_FALSE]) +m4trace:configure.in:590: -1- m4_pattern_allow([^am__EXEEXT_FALSE$]) +m4trace:configure.in:590: -1- _AM_SUBST_NOTMAKE([am__EXEEXT_TRUE]) +m4trace:configure.in:590: -1- _AM_SUBST_NOTMAKE([am__EXEEXT_FALSE]) +m4trace:configure.in:590: -1- _m4_warn([obsolete], [AC_C_BIGENDIAN should be used with AC_CONFIG_HEADERS], []) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([top_builddir]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([top_build_prefix]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([srcdir]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([abs_srcdir]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([top_srcdir]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([abs_top_srcdir]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([builddir]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([abs_builddir]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([abs_top_builddir]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([INSTALL]) +m4trace:configure.in:590: -1- AC_SUBST_TRACE([MKDIR_P]) +m4trace:configure.in:590: -1- AC_REQUIRE_AUX_FILE([ltmain.sh]) diff -up EMBOSS-6.2.0/configure.in.system-plplot EMBOSS-6.2.0/configure.in --- EMBOSS-6.2.0/configure.in.system-plplot 2010-04-07 12:06:27.663735436 -0400 +++ EMBOSS-6.2.0/configure.in 2010-04-07 12:06:27.775738370 -0400 @@ -268,6 +268,7 @@ AM_CONDITIONAL(AMPNG, false) CHECK_GENERAL CHECK_JAVA CHECK_JAVAOS +CHECK_PLPLOT CHECK_PNGDRIVER CHECK_AUTH CHECK_AMD64 @@ -586,7 +587,7 @@ dnl check and set compilation flags for CHECK_THREADS -AC_OUTPUT([plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile +AC_OUTPUT([nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile diff -up EMBOSS-6.2.0/configure.system-plplot EMBOSS-6.2.0/configure --- EMBOSS-6.2.0/configure.system-plplot 2010-04-07 12:06:27.684735087 -0400 +++ EMBOSS-6.2.0/configure 2010-04-07 12:06:47.802609579 -0400 @@ -778,6 +778,8 @@ MYSQL_LDFLAGS MYSQL_CFLAGS MYSQL_VERSION MYSQL_CONFIG +PLPLOT_LIBS +PLPLOT_CFLAGS JAVA_OK havejavac AMPNG_FALSE @@ -4604,13 +4606,13 @@ if test "${lt_cv_nm_interface+set}" = se else lt_cv_nm_interface="BSD nm" echo "int some_variable = 0;" > conftest.$ac_ext - (eval echo "\"\$as_me:4607: $ac_compile\"" >&5) + (eval echo "\"\$as_me:4609: $ac_compile\"" >&5) (eval "$ac_compile" 2>conftest.err) cat conftest.err >&5 - (eval echo "\"\$as_me:4610: $NM \\\"conftest.$ac_objext\\\"\"" >&5) + (eval echo "\"\$as_me:4612: $NM \\\"conftest.$ac_objext\\\"\"" >&5) (eval "$NM \"conftest.$ac_objext\"" 2>conftest.err > conftest.out) cat conftest.err >&5 - (eval echo "\"\$as_me:4613: output\"" >&5) + (eval echo "\"\$as_me:4615: output\"" >&5) cat conftest.out >&5 if $GREP 'External.*some_variable' conftest.out > /dev/null; then lt_cv_nm_interface="MS dumpbin" @@ -5816,7 +5818,7 @@ ia64-*-hpux*) ;; *-*-irix6*) # Find out which ABI we are using. - echo '#line 5819 "configure"' > conftest.$ac_ext + echo '#line 5821 "configure"' > conftest.$ac_ext if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 (eval $ac_compile) 2>&5 ac_status=$? @@ -7342,11 +7344,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:7345: $lt_compile\"" >&5) + (eval echo "\"\$as_me:7347: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:7349: \$? = $ac_status" >&5 + echo "$as_me:7351: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -7681,11 +7683,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:7684: $lt_compile\"" >&5) + (eval echo "\"\$as_me:7686: $lt_compile\"" >&5) (eval "$lt_compile" 2>conftest.err) ac_status=$? cat conftest.err >&5 - echo "$as_me:7688: \$? = $ac_status" >&5 + echo "$as_me:7690: \$? = $ac_status" >&5 if (exit $ac_status) && test -s "$ac_outfile"; then # The compiler can only warn and ignore the option if not recognized # So say no if there are warnings other than the usual output. @@ -7786,11 +7788,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:7789: $lt_compile\"" >&5) + (eval echo "\"\$as_me:7791: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:7793: \$? = $ac_status" >&5 + echo "$as_me:7795: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -7841,11 +7843,11 @@ else -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ -e 's:$: $lt_compiler_flag:'` - (eval echo "\"\$as_me:7844: $lt_compile\"" >&5) + (eval echo "\"\$as_me:7846: $lt_compile\"" >&5) (eval "$lt_compile" 2>out/conftest.err) ac_status=$? cat out/conftest.err >&5 - echo "$as_me:7848: \$? = $ac_status" >&5 + echo "$as_me:7850: \$? = $ac_status" >&5 if (exit $ac_status) && test -s out/conftest2.$ac_objext then # The compiler can only warn and ignore the option if not recognized @@ -10211,7 +10213,7 @@ else lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 lt_status=$lt_dlunknown cat > conftest.$ac_ext <<_LT_EOF -#line 10214 "configure" +#line 10216 "configure" #include "confdefs.h" #if HAVE_DLFCN_H @@ -10307,7 +10309,7 @@ else lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 lt_status=$lt_dlunknown cat > conftest.$ac_ext <<_LT_EOF -#line 10310 "configure" +#line 10312 "configure" #include "confdefs.h" #if HAVE_DLFCN_H @@ -13769,6 +13771,204 @@ fi + + + +PLPLOT_LIBS="" +OLIBS="$LIBS" +LIBS="" + +check_plplot_ok=yes +check_plplotpkg_ok=no +if test x = x && test x = x; then + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for PLPlot pkg-config info" >&5 +$as_echo_n "checking for PLPlot pkg-config info... " >&6; } + if pkg-config --exists plplotd; then + { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 +$as_echo "yes" >&6; } + PLPLOT_CFLAGS=`pkg-config --cflags plplotd` + PLPLOT_LIBS=`pkg-config --libs plplotd` + +$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + check_plplotpkg_ok=yes + else + { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 +$as_echo "no" >&6; } + fi +fi +if test x$check_plplotpkg_ok = xno; then + if test x = x; then + ac_fn_c_check_header_mongrel "$LINENO" "plplot.h" "ac_cv_header_plplot_h" "$ac_includes_default" +if test "x$ac_cv_header_plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + else + ac_fn_c_check_header_mongrel "$LINENO" "plplot/plplot.h" "ac_cv_header_plplot_plplot_h" "$ac_includes_default" +if test "x$ac_cv_header_plplot_plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "#define PLPLOT_H \"plplot/plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplot/plplotP.h\"" >>confdefs.h + + else + check_plplot_ok=no + fi + fi + else + ac_fn_c_check_header_mongrel "$LINENO" "/plplot.h" "ac_cv_header__plplot_h" "$ac_includes_default" +if test "x$ac_cv_header__plplot_h" = x""yes; then : + check_plplothead_ok=yes +else + check_plplothead_ok=no +fi + + + if test x$check_plplothead_ok = xyes; then + +$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h + + +$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h + + PLPLOT_CFLAGS="-I" + else + check_plplot_ok=no + fi + fi + if test x = x; then + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 +$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } +if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lplplotd $LIBS" +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char c_plinit (); +int +main () +{ +return c_plinit (); + ; + return 0; +} +_ACEOF +if ac_fn_c_try_link "$LINENO"; then : + ac_cv_lib_plplotd_c_plinit=yes +else + ac_cv_lib_plplotd_c_plinit=no +fi +rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 +$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } +if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : + cat >>confdefs.h <<_ACEOF +#define HAVE_LIBPLPLOTD 1 +_ACEOF + + LIBS="-lplplotd $LIBS" + +else + check_plplot_ok=no +fi + + PLPLOT_LIBS="-lplplotd" + else + { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 +$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } +if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : + $as_echo_n "(cached) " >&6 +else + ac_check_lib_save_LIBS=$LIBS +LIBS="-lplplotd -L $LIBS" +cat confdefs.h - <<_ACEOF >conftest.$ac_ext +/* end confdefs.h. */ + +/* Override any GCC internal prototype to avoid an error. + Use char because int might match the return type of a GCC + builtin and then its argument prototype would still apply. */ +#ifdef __cplusplus +extern "C" +#endif +char c_plinit (); +int +main () +{ +return c_plinit (); + ; + return 0; +} +_ACEOF +if ac_fn_c_try_link "$LINENO"; then : + ac_cv_lib_plplotd_c_plinit=yes +else + ac_cv_lib_plplotd_c_plinit=no +fi +rm -f core conftest.err conftest.$ac_objext \ + conftest$ac_exeext conftest.$ac_ext +LIBS=$ac_check_lib_save_LIBS +fi +{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 +$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } +if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : + cat >>confdefs.h <<_ACEOF +#define HAVE_LIBPLPLOTD 1 +_ACEOF + + LIBS="-lplplotd $LIBS" + +else + check_plplot_ok=no +fi + + PLPLOT_LIBS="-L -lplplotd" + fi +fi + +LIBS="$OLIBS" +if test x$check_plplot_ok = xyes; then + + + +$as_echo "#define HAVE_PLPLOT 1" >>confdefs.h + +fi + + # # Handle user hints # @@ -15042,7 +15242,7 @@ fi -ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/api/Makefile jemboss/api/org/Makefile jemboss/api/org/emboss/Makefile jemboss/api/org/emboss/jemboss/Makefile jemboss/api/org/emboss/jemboss/gui/Makefile jemboss/api/org/emboss/jemboss/gui/filetree/Makefile jemboss/api/org/emboss/jemboss/gui/form/Makefile jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/api/org/emboss/jemboss/gui/startup/Makefile jemboss/api/org/emboss/jemboss/parser/Makefile jemboss/api/org/emboss/jemboss/parser/acd/Makefile jemboss/api/org/emboss/jemboss/programs/Makefile jemboss/api/org/emboss/jemboss/soap/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/org/Makefile jemboss/org/emboss/Makefile jemboss/org/emboss/jemboss/Makefile jemboss/org/emboss/jemboss/graphics/Makefile jemboss/org/emboss/jemboss/gui/Makefile jemboss/org/emboss/jemboss/gui/filetree/Makefile jemboss/org/emboss/jemboss/gui/form/Makefile jemboss/org/emboss/jemboss/gui/startup/Makefile jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/org/emboss/jemboss/parser/Makefile jemboss/org/emboss/jemboss/parser/acd/Makefile jemboss/org/emboss/jemboss/programs/Makefile jemboss/org/emboss/jemboss/server/Makefile jemboss/org/emboss/jemboss/soap/Makefile jemboss/org/emboss/jemboss/editor/Makefile jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile" +ac_config_files="$ac_config_files nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/api/Makefile jemboss/api/org/Makefile jemboss/api/org/emboss/Makefile jemboss/api/org/emboss/jemboss/Makefile jemboss/api/org/emboss/jemboss/gui/Makefile jemboss/api/org/emboss/jemboss/gui/filetree/Makefile jemboss/api/org/emboss/jemboss/gui/form/Makefile jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/api/org/emboss/jemboss/gui/startup/Makefile jemboss/api/org/emboss/jemboss/parser/Makefile jemboss/api/org/emboss/jemboss/parser/acd/Makefile jemboss/api/org/emboss/jemboss/programs/Makefile jemboss/api/org/emboss/jemboss/soap/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/org/Makefile jemboss/org/emboss/Makefile jemboss/org/emboss/jemboss/Makefile jemboss/org/emboss/jemboss/graphics/Makefile jemboss/org/emboss/jemboss/gui/Makefile jemboss/org/emboss/jemboss/gui/filetree/Makefile jemboss/org/emboss/jemboss/gui/form/Makefile jemboss/org/emboss/jemboss/gui/startup/Makefile jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile jemboss/org/emboss/jemboss/parser/Makefile jemboss/org/emboss/jemboss/parser/acd/Makefile jemboss/org/emboss/jemboss/programs/Makefile jemboss/org/emboss/jemboss/server/Makefile jemboss/org/emboss/jemboss/soap/Makefile jemboss/org/emboss/jemboss/editor/Makefile jemboss/org/emboss/jemboss/draw/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile" cat >confcache <<\_ACEOF # This file is a shell script that caches the results of configure @@ -16076,8 +16276,6 @@ do case $ac_config_target in "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;; "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;; - "plplot/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/Makefile" ;; - "plplot/lib/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/lib/Makefile" ;; "nucleus/Makefile") CONFIG_FILES="$CONFIG_FILES nucleus/Makefile" ;; "ajax/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/Makefile" ;; "ajax/expat/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/expat/Makefile" ;; diff -up EMBOSS-6.2.0/doc/Makefile.in.system-plplot EMBOSS-6.2.0/doc/Makefile.in --- EMBOSS-6.2.0/doc/Makefile.in.system-plplot 2010-04-07 12:06:27.537735716 -0400 +++ EMBOSS-6.2.0/doc/Makefile.in 2010-04-07 12:10:21.938610697 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/doc/manuals/Makefile.in.system-plplot EMBOSS-6.2.0/doc/manuals/Makefile.in --- EMBOSS-6.2.0/doc/manuals/Makefile.in.system-plplot 2010-04-07 12:06:27.538735227 -0400 +++ EMBOSS-6.2.0/doc/manuals/Makefile.in 2010-04-07 12:10:22.065610628 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/doc/programs/html/Makefile.in.system-plplot EMBOSS-6.2.0/doc/programs/html/Makefile.in --- EMBOSS-6.2.0/doc/programs/html/Makefile.in.system-plplot 2010-04-07 12:06:27.539736624 -0400 +++ EMBOSS-6.2.0/doc/programs/html/Makefile.in 2010-04-07 12:10:22.270610977 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/doc/programs/Makefile.in.system-plplot EMBOSS-6.2.0/doc/programs/Makefile.in --- EMBOSS-6.2.0/doc/programs/Makefile.in.system-plplot 2010-04-07 12:06:27.541735157 -0400 +++ EMBOSS-6.2.0/doc/programs/Makefile.in 2010-04-07 12:10:22.141610628 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/doc/programs/text/Makefile.in.system-plplot EMBOSS-6.2.0/doc/programs/text/Makefile.in --- EMBOSS-6.2.0/doc/programs/text/Makefile.in.system-plplot 2010-04-07 12:06:27.542739347 -0400 +++ EMBOSS-6.2.0/doc/programs/text/Makefile.in 2010-04-07 12:10:22.357610907 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/doc/tutorials/Makefile.in.system-plplot EMBOSS-6.2.0/doc/tutorials/Makefile.in --- EMBOSS-6.2.0/doc/tutorials/Makefile.in.system-plplot 2010-04-07 12:06:27.543734528 -0400 +++ EMBOSS-6.2.0/doc/tutorials/Makefile.in 2010-04-07 12:10:22.425609720 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/acd/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/acd/Makefile.in --- EMBOSS-6.2.0/emboss/acd/Makefile.in.system-plplot 2010-04-07 12:06:27.545735157 -0400 +++ EMBOSS-6.2.0/emboss/acd/Makefile.in 2010-04-07 12:10:23.426734597 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -142,6 +143,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/AAINDEX/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/AAINDEX/Makefile.in --- EMBOSS-6.2.0/emboss/data/AAINDEX/Makefile.in.system-plplot 2010-04-07 12:06:27.547735366 -0400 +++ EMBOSS-6.2.0/emboss/data/AAINDEX/Makefile.in 2010-04-07 12:10:23.497735575 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/CODONS/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/CODONS/Makefile.in --- EMBOSS-6.2.0/emboss/data/CODONS/Makefile.in.system-plplot 2010-04-07 12:06:27.548737532 -0400 +++ EMBOSS-6.2.0/emboss/data/CODONS/Makefile.in 2010-04-07 12:10:23.575735575 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/JASPAR_CNE/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_CNE/Makefile.in --- EMBOSS-6.2.0/emboss/data/JASPAR_CNE/Makefile.in.system-plplot 2010-04-07 12:06:27.549737741 -0400 +++ EMBOSS-6.2.0/emboss/data/JASPAR_CNE/Makefile.in 2010-04-07 12:10:23.645735436 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/JASPAR_CORE/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_CORE/Makefile.in --- EMBOSS-6.2.0/emboss/data/JASPAR_CORE/Makefile.in.system-plplot 2010-04-07 12:06:27.551735297 -0400 +++ EMBOSS-6.2.0/emboss/data/JASPAR_CORE/Makefile.in 2010-04-07 12:10:23.747735505 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/JASPAR_FAM/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_FAM/Makefile.in --- EMBOSS-6.2.0/emboss/data/JASPAR_FAM/Makefile.in.system-plplot 2010-04-07 12:06:27.552735227 -0400 +++ EMBOSS-6.2.0/emboss/data/JASPAR_FAM/Makefile.in 2010-04-07 12:10:23.819735436 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/JASPAR_PHYLOFACTS/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_PHYLOFACTS/Makefile.in --- EMBOSS-6.2.0/emboss/data/JASPAR_PHYLOFACTS/Makefile.in.system-plplot 2010-04-07 12:06:27.554735297 -0400 +++ EMBOSS-6.2.0/emboss/data/JASPAR_PHYLOFACTS/Makefile.in 2010-04-07 12:10:23.902735785 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/JASPAR_POLII/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_POLII/Makefile.in --- EMBOSS-6.2.0/emboss/data/JASPAR_POLII/Makefile.in.system-plplot 2010-04-07 12:06:27.555735227 -0400 +++ EMBOSS-6.2.0/emboss/data/JASPAR_POLII/Makefile.in 2010-04-07 12:10:24.040735645 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/JASPAR_SPLICE/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/JASPAR_SPLICE/Makefile.in --- EMBOSS-6.2.0/emboss/data/JASPAR_SPLICE/Makefile.in.system-plplot 2010-04-07 12:06:27.556737811 -0400 +++ EMBOSS-6.2.0/emboss/data/JASPAR_SPLICE/Makefile.in 2010-04-07 12:10:24.114735226 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/Makefile.in --- EMBOSS-6.2.0/emboss/data/Makefile.in.system-plplot 2010-04-07 12:06:27.558735366 -0400 +++ EMBOSS-6.2.0/emboss/data/Makefile.in 2010-04-07 12:10:24.203736064 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/PRINTS/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/PRINTS/Makefile.in --- EMBOSS-6.2.0/emboss/data/PRINTS/Makefile.in.system-plplot 2010-04-07 12:06:27.559737392 -0400 +++ EMBOSS-6.2.0/emboss/data/PRINTS/Makefile.in 2010-04-07 12:10:24.300735715 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/PROSITE/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/PROSITE/Makefile.in --- EMBOSS-6.2.0/emboss/data/PROSITE/Makefile.in.system-plplot 2010-04-07 12:06:27.561735716 -0400 +++ EMBOSS-6.2.0/emboss/data/PROSITE/Makefile.in 2010-04-07 12:10:24.383735575 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/data/REBASE/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/data/REBASE/Makefile.in --- EMBOSS-6.2.0/emboss/data/REBASE/Makefile.in.system-plplot 2010-04-07 12:06:27.562735087 -0400 +++ EMBOSS-6.2.0/emboss/data/REBASE/Makefile.in 2010-04-07 12:10:24.487735366 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/emboss/Makefile.am.system-plplot EMBOSS-6.2.0/emboss/Makefile.am --- EMBOSS-6.2.0/emboss/Makefile.am.system-plplot 2010-04-07 12:06:27.685734808 -0400 +++ EMBOSS-6.2.0/emboss/Makefile.am 2010-04-07 12:06:27.809739068 -0400 @@ -80,7 +80,7 @@ INCLUDES = -I$(top_srcdir)/nucleus \ -I$(top_srcdir)/ajax/expat \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ -I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \ - -I$(top_srcdir)/ajax/acd -I$(top_srcdir)/plplot + -I$(top_srcdir)/ajax/acd $(PLPLOT_CFLAGS) aaindexextract_SOURCES = aaindexextract.c @@ -309,7 +309,7 @@ LDADD = ../nucleus/libnucleus.la ../ajax ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la \ + $(PLPLOT_LIBS) \ $(XLIB) pkgdata_DATA = emboss.default.template diff -up EMBOSS-6.2.0/emboss/Makefile.in.system-plplot EMBOSS-6.2.0/emboss/Makefile.in --- EMBOSS-6.2.0/emboss/Makefile.in.system-plplot 2010-04-07 12:06:27.700735157 -0400 +++ EMBOSS-6.2.0/emboss/Makefile.in 2010-04-07 12:10:23.333735086 -0400 @@ -114,8 +114,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -131,14 +132,14 @@ aaindexextract_DEPENDENCIES = ../nucleus ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_abiview_OBJECTS = abiview.$(OBJEXT) abiview_OBJECTS = $(am_abiview_OBJECTS) abiview_LDADD = $(LDADD) abiview_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_acdc_OBJECTS = acdc.$(OBJEXT) acdc_OBJECTS = $(am_acdc_OBJECTS) @@ -146,7 +147,7 @@ acdc_LDADD = $(LDADD) acdc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_acdlog_OBJECTS = acdlog.$(OBJEXT) acdlog_OBJECTS = $(am_acdlog_OBJECTS) @@ -154,7 +155,7 @@ acdlog_LDADD = $(LDADD) acdlog_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_acdpretty_OBJECTS = acdpretty.$(OBJEXT) acdpretty_OBJECTS = $(am_acdpretty_OBJECTS) @@ -163,7 +164,7 @@ acdpretty_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_acdrelations_OBJECTS = acdrelations.$(OBJEXT) acdrelations_OBJECTS = $(am_acdrelations_OBJECTS) acdrelations_LDADD = $(LDADD) @@ -171,14 +172,14 @@ acdrelations_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_acdtable_OBJECTS = acdtable.$(OBJEXT) acdtable_OBJECTS = $(am_acdtable_OBJECTS) acdtable_LDADD = $(LDADD) acdtable_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_acdtrace_OBJECTS = acdtrace.$(OBJEXT) acdtrace_OBJECTS = $(am_acdtrace_OBJECTS) @@ -186,7 +187,7 @@ acdtrace_LDADD = $(LDADD) acdtrace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_acdvalid_OBJECTS = acdvalid.$(OBJEXT) acdvalid_OBJECTS = $(am_acdvalid_OBJECTS) @@ -194,7 +195,7 @@ acdvalid_LDADD = $(LDADD) acdvalid_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_acdxsd_OBJECTS = acdxsd.$(OBJEXT) acdxsd_OBJECTS = $(am_acdxsd_OBJECTS) @@ -202,7 +203,7 @@ acdxsd_LDADD = $(LDADD) acdxsd_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_ajtest_OBJECTS = ajtest.$(OBJEXT) ajtest_OBJECTS = $(am_ajtest_OBJECTS) @@ -210,7 +211,7 @@ ajtest_LDADD = $(LDADD) ajtest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_aligncopy_OBJECTS = aligncopy.$(OBJEXT) aligncopy_OBJECTS = $(am_aligncopy_OBJECTS) @@ -219,7 +220,7 @@ aligncopy_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_aligncopypair_OBJECTS = aligncopypair.$(OBJEXT) aligncopypair_OBJECTS = $(am_aligncopypair_OBJECTS) aligncopypair_LDADD = $(LDADD) @@ -227,7 +228,7 @@ aligncopypair_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_antigenic_OBJECTS = antigenic.$(OBJEXT) antigenic_OBJECTS = $(am_antigenic_OBJECTS) antigenic_LDADD = $(LDADD) @@ -235,7 +236,7 @@ antigenic_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_backtranambig_OBJECTS = backtranambig.$(OBJEXT) backtranambig_OBJECTS = $(am_backtranambig_OBJECTS) backtranambig_LDADD = $(LDADD) @@ -243,7 +244,7 @@ backtranambig_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_backtranseq_OBJECTS = backtranseq.$(OBJEXT) backtranseq_OBJECTS = $(am_backtranseq_OBJECTS) backtranseq_LDADD = $(LDADD) @@ -251,14 +252,14 @@ backtranseq_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_banana_OBJECTS = banana.$(OBJEXT) banana_OBJECTS = $(am_banana_OBJECTS) banana_LDADD = $(LDADD) banana_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_biosed_OBJECTS = biosed.$(OBJEXT) biosed_OBJECTS = $(am_biosed_OBJECTS) @@ -266,7 +267,7 @@ biosed_LDADD = $(LDADD) biosed_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_btwisted_OBJECTS = btwisted.$(OBJEXT) btwisted_OBJECTS = $(am_btwisted_OBJECTS) @@ -274,7 +275,7 @@ btwisted_LDADD = $(LDADD) btwisted_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_cai_OBJECTS = cai.$(OBJEXT) cai_OBJECTS = $(am_cai_OBJECTS) @@ -282,7 +283,7 @@ cai_LDADD = $(LDADD) cai_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_chaos_OBJECTS = chaos.$(OBJEXT) chaos_OBJECTS = $(am_chaos_OBJECTS) @@ -290,7 +291,7 @@ chaos_LDADD = $(LDADD) chaos_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_charge_OBJECTS = charge.$(OBJEXT) charge_OBJECTS = $(am_charge_OBJECTS) @@ -298,7 +299,7 @@ charge_LDADD = $(LDADD) charge_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_checktrans_OBJECTS = checktrans.$(OBJEXT) checktrans_OBJECTS = $(am_checktrans_OBJECTS) @@ -307,14 +308,14 @@ checktrans_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_chips_OBJECTS = chips.$(OBJEXT) chips_OBJECTS = $(am_chips_OBJECTS) chips_LDADD = $(LDADD) chips_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_cirdna_OBJECTS = cirdna.$(OBJEXT) cirdna_OBJECTS = $(am_cirdna_OBJECTS) @@ -322,7 +323,7 @@ cirdna_LDADD = $(LDADD) cirdna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_codcmp_OBJECTS = codcmp.$(OBJEXT) codcmp_OBJECTS = $(am_codcmp_OBJECTS) @@ -330,7 +331,7 @@ codcmp_LDADD = $(LDADD) codcmp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) codcopy_SOURCES = codcopy.c codcopy_OBJECTS = codcopy.$(OBJEXT) @@ -338,7 +339,7 @@ codcopy_LDADD = $(LDADD) codcopy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_coderet_OBJECTS = coderet.$(OBJEXT) coderet_OBJECTS = $(am_coderet_OBJECTS) @@ -346,7 +347,7 @@ coderet_LDADD = $(LDADD) coderet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_complex_OBJECTS = complex.$(OBJEXT) complex_OBJECTS = $(am_complex_OBJECTS) @@ -354,7 +355,7 @@ complex_LDADD = $(LDADD) complex_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_compseq_OBJECTS = compseq.$(OBJEXT) compseq_OBJECTS = $(am_compseq_OBJECTS) @@ -362,7 +363,7 @@ compseq_LDADD = $(LDADD) compseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_cons_OBJECTS = cons.$(OBJEXT) cons_OBJECTS = $(am_cons_OBJECTS) @@ -370,7 +371,7 @@ cons_LDADD = $(LDADD) cons_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_consambig_OBJECTS = consambig.$(OBJEXT) consambig_OBJECTS = $(am_consambig_OBJECTS) @@ -379,7 +380,7 @@ consambig_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_corbatest_OBJECTS = corbatest.$(OBJEXT) corbatest_OBJECTS = $(am_corbatest_OBJECTS) corbatest_LDADD = $(LDADD) @@ -387,14 +388,14 @@ corbatest_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_cpgplot_OBJECTS = cpgplot.$(OBJEXT) cpgplot_OBJECTS = $(am_cpgplot_OBJECTS) cpgplot_LDADD = $(LDADD) cpgplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_cpgreport_OBJECTS = cpgreport.$(OBJEXT) cpgreport_OBJECTS = $(am_cpgreport_OBJECTS) @@ -403,14 +404,14 @@ cpgreport_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_cusp_OBJECTS = cusp.$(OBJEXT) cusp_OBJECTS = $(am_cusp_OBJECTS) cusp_LDADD = $(LDADD) cusp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_cutgextract_OBJECTS = cutgextract.$(OBJEXT) cutgextract_OBJECTS = $(am_cutgextract_OBJECTS) @@ -419,14 +420,14 @@ cutgextract_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_cutseq_OBJECTS = cutseq.$(OBJEXT) cutseq_OBJECTS = $(am_cutseq_OBJECTS) cutseq_LDADD = $(LDADD) cutseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_dan_OBJECTS = dan.$(OBJEXT) dan_OBJECTS = $(am_dan_OBJECTS) @@ -434,7 +435,7 @@ dan_LDADD = $(LDADD) dan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_dbiblast_OBJECTS = dbiblast.$(OBJEXT) dbiblast_OBJECTS = $(am_dbiblast_OBJECTS) @@ -442,7 +443,7 @@ dbiblast_LDADD = $(LDADD) dbiblast_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_dbifasta_OBJECTS = dbifasta.$(OBJEXT) dbifasta_OBJECTS = $(am_dbifasta_OBJECTS) @@ -450,7 +451,7 @@ dbifasta_LDADD = $(LDADD) dbifasta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_dbiflat_OBJECTS = dbiflat.$(OBJEXT) dbiflat_OBJECTS = $(am_dbiflat_OBJECTS) @@ -458,7 +459,7 @@ dbiflat_LDADD = $(LDADD) dbiflat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_dbigcg_OBJECTS = dbigcg.$(OBJEXT) dbigcg_OBJECTS = $(am_dbigcg_OBJECTS) @@ -466,7 +467,7 @@ dbigcg_LDADD = $(LDADD) dbigcg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_dbxfasta_OBJECTS = dbxfasta.$(OBJEXT) dbxfasta_OBJECTS = $(am_dbxfasta_OBJECTS) @@ -474,7 +475,7 @@ dbxfasta_LDADD = $(LDADD) dbxfasta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_dbxflat_OBJECTS = dbxflat.$(OBJEXT) dbxflat_OBJECTS = $(am_dbxflat_OBJECTS) @@ -482,7 +483,7 @@ dbxflat_LDADD = $(LDADD) dbxflat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_dbxgcg_OBJECTS = dbxgcg.$(OBJEXT) dbxgcg_OBJECTS = $(am_dbxgcg_OBJECTS) @@ -490,7 +491,7 @@ dbxgcg_LDADD = $(LDADD) dbxgcg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_degapseq_OBJECTS = degapseq.$(OBJEXT) degapseq_OBJECTS = $(am_degapseq_OBJECTS) @@ -498,7 +499,7 @@ degapseq_LDADD = $(LDADD) degapseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_density_OBJECTS = density.$(OBJEXT) density_OBJECTS = $(am_density_OBJECTS) @@ -506,7 +507,7 @@ density_LDADD = $(LDADD) density_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_descseq_OBJECTS = descseq.$(OBJEXT) descseq_OBJECTS = $(am_descseq_OBJECTS) @@ -514,7 +515,7 @@ descseq_LDADD = $(LDADD) descseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_diffseq_OBJECTS = diffseq.$(OBJEXT) diffseq_OBJECTS = $(am_diffseq_OBJECTS) @@ -522,7 +523,7 @@ diffseq_LDADD = $(LDADD) diffseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_digest_OBJECTS = digest.$(OBJEXT) digest_OBJECTS = $(am_digest_OBJECTS) @@ -530,7 +531,7 @@ digest_LDADD = $(LDADD) digest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_distmat_OBJECTS = distmat.$(OBJEXT) distmat_OBJECTS = $(am_distmat_OBJECTS) @@ -538,7 +539,7 @@ distmat_LDADD = $(LDADD) distmat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_dotmatcher_OBJECTS = dotmatcher.$(OBJEXT) dotmatcher_OBJECTS = $(am_dotmatcher_OBJECTS) @@ -547,14 +548,14 @@ dotmatcher_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_dotpath_OBJECTS = dotpath.$(OBJEXT) dotpath_OBJECTS = $(am_dotpath_OBJECTS) dotpath_LDADD = $(LDADD) dotpath_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_dottup_OBJECTS = dottup.$(OBJEXT) dottup_OBJECTS = $(am_dottup_OBJECTS) @@ -562,7 +563,7 @@ dottup_LDADD = $(LDADD) dottup_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_dreg_OBJECTS = dreg.$(OBJEXT) dreg_OBJECTS = $(am_dreg_OBJECTS) @@ -570,7 +571,7 @@ dreg_LDADD = $(LDADD) dreg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_edamclean_OBJECTS = edamclean.$(OBJEXT) edamclean_OBJECTS = $(am_edamclean_OBJECTS) @@ -579,14 +580,14 @@ edamclean_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_edialign_OBJECTS = edialign.$(OBJEXT) edialign_OBJECTS = $(am_edialign_OBJECTS) edialign_LDADD = $(LDADD) edialign_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_einverted_OBJECTS = einverted.$(OBJEXT) einverted_OBJECTS = $(am_einverted_OBJECTS) @@ -595,7 +596,7 @@ einverted_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_embossdata_OBJECTS = embossdata.$(OBJEXT) embossdata_OBJECTS = $(am_embossdata_OBJECTS) embossdata_LDADD = $(LDADD) @@ -603,7 +604,7 @@ embossdata_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_embossversion_OBJECTS = embossversion.$(OBJEXT) embossversion_OBJECTS = $(am_embossversion_OBJECTS) embossversion_LDADD = $(LDADD) @@ -611,14 +612,14 @@ embossversion_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_emma_OBJECTS = emma.$(OBJEXT) emma_OBJECTS = $(am_emma_OBJECTS) emma_LDADD = $(LDADD) emma_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_emowse_OBJECTS = emowse.$(OBJEXT) emowse_OBJECTS = $(am_emowse_OBJECTS) @@ -626,7 +627,7 @@ emowse_LDADD = $(LDADD) emowse_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_ensembltest_OBJECTS = ensembltest.$(OBJEXT) ensembltest_OBJECTS = $(am_ensembltest_OBJECTS) @@ -635,14 +636,14 @@ ensembltest_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_entrails_OBJECTS = entrails.$(OBJEXT) entrails_OBJECTS = $(am_entrails_OBJECTS) entrails_LDADD = $(LDADD) entrails_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_entrailsbook_OBJECTS = entrailsbook.$(OBJEXT) entrailsbook_OBJECTS = $(am_entrailsbook_OBJECTS) @@ -651,7 +652,7 @@ entrailsbook_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_entrailshtml_OBJECTS = entrailshtml.$(OBJEXT) entrailshtml_OBJECTS = $(am_entrailshtml_OBJECTS) entrailshtml_LDADD = $(LDADD) @@ -659,7 +660,7 @@ entrailshtml_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_entrailswiki_OBJECTS = entrailswiki.$(OBJEXT) entrailswiki_OBJECTS = $(am_entrailswiki_OBJECTS) entrailswiki_LDADD = $(LDADD) @@ -667,14 +668,14 @@ entrailswiki_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_entret_OBJECTS = entret.$(OBJEXT) entret_OBJECTS = $(am_entret_OBJECTS) entret_LDADD = $(LDADD) entret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_epestfind_OBJECTS = epestfind.$(OBJEXT) epestfind_OBJECTS = $(am_epestfind_OBJECTS) @@ -683,14 +684,14 @@ epestfind_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_eprimer3_OBJECTS = eprimer3.$(OBJEXT) eprimer3_OBJECTS = $(am_eprimer3_OBJECTS) eprimer3_LDADD = $(LDADD) eprimer3_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_equicktandem_OBJECTS = equicktandem.$(OBJEXT) equicktandem_OBJECTS = $(am_equicktandem_OBJECTS) @@ -699,7 +700,7 @@ equicktandem_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_est2genome_OBJECTS = est2genome.$(OBJEXT) est2genome_OBJECTS = $(am_est2genome_OBJECTS) est2genome_LDADD = $(LDADD) @@ -707,14 +708,14 @@ est2genome_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_etandem_OBJECTS = etandem.$(OBJEXT) etandem_OBJECTS = $(am_etandem_OBJECTS) etandem_LDADD = $(LDADD) etandem_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_extractalign_OBJECTS = extractalign.$(OBJEXT) extractalign_OBJECTS = $(am_extractalign_OBJECTS) @@ -723,7 +724,7 @@ extractalign_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_extractfeat_OBJECTS = extractfeat.$(OBJEXT) extractfeat_OBJECTS = $(am_extractfeat_OBJECTS) extractfeat_LDADD = $(LDADD) @@ -731,7 +732,7 @@ extractfeat_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_extractseq_OBJECTS = extractseq.$(OBJEXT) extractseq_OBJECTS = $(am_extractseq_OBJECTS) extractseq_LDADD = $(LDADD) @@ -739,14 +740,14 @@ extractseq_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_featcopy_OBJECTS = featcopy.$(OBJEXT) featcopy_OBJECTS = $(am_featcopy_OBJECTS) featcopy_LDADD = $(LDADD) featcopy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_featreport_OBJECTS = featreport.$(OBJEXT) featreport_OBJECTS = $(am_featreport_OBJECTS) @@ -755,14 +756,14 @@ featreport_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_findkm_OBJECTS = findkm.$(OBJEXT) findkm_OBJECTS = $(am_findkm_OBJECTS) findkm_LDADD = $(LDADD) findkm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_freak_OBJECTS = freak.$(OBJEXT) freak_OBJECTS = $(am_freak_OBJECTS) @@ -770,7 +771,7 @@ freak_LDADD = $(LDADD) freak_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_fuzznuc_OBJECTS = fuzznuc.$(OBJEXT) fuzznuc_OBJECTS = $(am_fuzznuc_OBJECTS) @@ -778,7 +779,7 @@ fuzznuc_LDADD = $(LDADD) fuzznuc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_fuzzpro_OBJECTS = fuzzpro.$(OBJEXT) fuzzpro_OBJECTS = $(am_fuzzpro_OBJECTS) @@ -786,7 +787,7 @@ fuzzpro_LDADD = $(LDADD) fuzzpro_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_fuzztran_OBJECTS = fuzztran.$(OBJEXT) fuzztran_OBJECTS = $(am_fuzztran_OBJECTS) @@ -794,7 +795,7 @@ fuzztran_LDADD = $(LDADD) fuzztran_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_garnier_OBJECTS = garnier.$(OBJEXT) garnier_OBJECTS = $(am_garnier_OBJECTS) @@ -802,7 +803,7 @@ garnier_LDADD = $(LDADD) garnier_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_geecee_OBJECTS = geecee.$(OBJEXT) geecee_OBJECTS = $(am_geecee_OBJECTS) @@ -810,7 +811,7 @@ geecee_LDADD = $(LDADD) geecee_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_getorf_OBJECTS = getorf.$(OBJEXT) getorf_OBJECTS = $(am_getorf_OBJECTS) @@ -818,7 +819,7 @@ getorf_LDADD = $(LDADD) getorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_helixturnhelix_OBJECTS = helixturnhelix.$(OBJEXT) helixturnhelix_OBJECTS = $(am_helixturnhelix_OBJECTS) @@ -827,7 +828,7 @@ helixturnhelix_DEPENDENCIES = ../nucleus ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_histogramtest_OBJECTS = histogramtest.$(OBJEXT) histogramtest_OBJECTS = $(am_histogramtest_OBJECTS) histogramtest_LDADD = $(LDADD) @@ -835,14 +836,14 @@ histogramtest_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_hmoment_OBJECTS = hmoment.$(OBJEXT) hmoment_OBJECTS = $(am_hmoment_OBJECTS) hmoment_LDADD = $(LDADD) hmoment_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_iep_OBJECTS = iep.$(OBJEXT) iep_OBJECTS = $(am_iep_OBJECTS) @@ -850,7 +851,7 @@ iep_LDADD = $(LDADD) iep_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_infoalign_OBJECTS = infoalign.$(OBJEXT) infoalign_OBJECTS = $(am_infoalign_OBJECTS) @@ -859,14 +860,14 @@ infoalign_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_infobase_OBJECTS = infobase.$(OBJEXT) infobase_OBJECTS = $(am_infobase_OBJECTS) infobase_LDADD = $(LDADD) infobase_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_inforesidue_OBJECTS = inforesidue.$(OBJEXT) inforesidue_OBJECTS = $(am_inforesidue_OBJECTS) @@ -875,14 +876,14 @@ inforesidue_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_infoseq_OBJECTS = infoseq.$(OBJEXT) infoseq_OBJECTS = $(am_infoseq_OBJECTS) infoseq_LDADD = $(LDADD) infoseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_intconv_OBJECTS = intconv.$(OBJEXT) intconv_OBJECTS = $(am_intconv_OBJECTS) @@ -890,7 +891,7 @@ intconv_LDADD = $(LDADD) intconv_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_isochore_OBJECTS = isochore.$(OBJEXT) isochore_OBJECTS = $(am_isochore_OBJECTS) @@ -898,7 +899,7 @@ isochore_LDADD = $(LDADD) isochore_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_jaspextract_OBJECTS = jaspextract.$(OBJEXT) jaspextract_OBJECTS = $(am_jaspextract_OBJECTS) @@ -907,14 +908,14 @@ jaspextract_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_jaspscan_OBJECTS = jaspscan.$(OBJEXT) jaspscan_OBJECTS = $(am_jaspscan_OBJECTS) jaspscan_LDADD = $(LDADD) jaspscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_jembossctl_OBJECTS = jembossctl.$(OBJEXT) jembossctl_OBJECTS = $(am_jembossctl_OBJECTS) @@ -923,14 +924,14 @@ jembossctl_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_lindna_OBJECTS = lindna.$(OBJEXT) lindna_OBJECTS = $(am_lindna_OBJECTS) lindna_LDADD = $(LDADD) lindna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_listor_OBJECTS = listor.$(OBJEXT) listor_OBJECTS = $(am_listor_OBJECTS) @@ -938,7 +939,7 @@ listor_LDADD = $(LDADD) listor_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) makenucseq_SOURCES = makenucseq.c makenucseq_OBJECTS = makenucseq.$(OBJEXT) @@ -947,7 +948,7 @@ makenucseq_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) makeprotseq_SOURCES = makeprotseq.c makeprotseq_OBJECTS = makeprotseq.$(OBJEXT) makeprotseq_LDADD = $(LDADD) @@ -955,14 +956,14 @@ makeprotseq_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_marscan_OBJECTS = marscan.$(OBJEXT) marscan_OBJECTS = $(am_marscan_OBJECTS) marscan_LDADD = $(LDADD) marscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_maskambignuc_OBJECTS = maskambignuc.$(OBJEXT) maskambignuc_OBJECTS = $(am_maskambignuc_OBJECTS) @@ -971,7 +972,7 @@ maskambignuc_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_maskambigprot_OBJECTS = maskambigprot.$(OBJEXT) maskambigprot_OBJECTS = $(am_maskambigprot_OBJECTS) maskambigprot_LDADD = $(LDADD) @@ -979,14 +980,14 @@ maskambigprot_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_maskfeat_OBJECTS = maskfeat.$(OBJEXT) maskfeat_OBJECTS = $(am_maskfeat_OBJECTS) maskfeat_LDADD = $(LDADD) maskfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_maskseq_OBJECTS = maskseq.$(OBJEXT) maskseq_OBJECTS = $(am_maskseq_OBJECTS) @@ -994,7 +995,7 @@ maskseq_LDADD = $(LDADD) maskseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_matcher_OBJECTS = matcher.$(OBJEXT) matcher_OBJECTS = $(am_matcher_OBJECTS) @@ -1002,7 +1003,7 @@ matcher_LDADD = $(LDADD) matcher_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_megamerger_OBJECTS = megamerger.$(OBJEXT) megamerger_OBJECTS = $(am_megamerger_OBJECTS) @@ -1011,14 +1012,14 @@ megamerger_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_merger_OBJECTS = merger.$(OBJEXT) merger_OBJECTS = $(am_merger_OBJECTS) merger_LDADD = $(LDADD) merger_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_msbar_OBJECTS = msbar.$(OBJEXT) msbar_OBJECTS = $(am_msbar_OBJECTS) @@ -1026,7 +1027,7 @@ msbar_LDADD = $(LDADD) msbar_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_mwcontam_OBJECTS = mwcontam.$(OBJEXT) mwcontam_OBJECTS = $(am_mwcontam_OBJECTS) @@ -1034,7 +1035,7 @@ mwcontam_LDADD = $(LDADD) mwcontam_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_mwfilter_OBJECTS = mwfilter.$(OBJEXT) mwfilter_OBJECTS = $(am_mwfilter_OBJECTS) @@ -1042,7 +1043,7 @@ mwfilter_LDADD = $(LDADD) mwfilter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_needle_OBJECTS = needle.$(OBJEXT) needle_OBJECTS = $(am_needle_OBJECTS) @@ -1050,7 +1051,7 @@ needle_LDADD = $(LDADD) needle_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_needleall_OBJECTS = needleall.$(OBJEXT) needleall_OBJECTS = $(am_needleall_OBJECTS) @@ -1059,14 +1060,14 @@ needleall_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_newcoils_OBJECTS = newcoils.$(OBJEXT) newcoils_OBJECTS = $(am_newcoils_OBJECTS) newcoils_LDADD = $(LDADD) newcoils_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_newcpgreport_OBJECTS = newcpgreport.$(OBJEXT) newcpgreport_OBJECTS = $(am_newcpgreport_OBJECTS) @@ -1075,7 +1076,7 @@ newcpgreport_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_newcpgseek_OBJECTS = newcpgseek.$(OBJEXT) newcpgseek_OBJECTS = $(am_newcpgseek_OBJECTS) newcpgseek_LDADD = $(LDADD) @@ -1083,14 +1084,14 @@ newcpgseek_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_newseq_OBJECTS = newseq.$(OBJEXT) newseq_OBJECTS = $(am_newseq_OBJECTS) newseq_LDADD = $(LDADD) newseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_nohtml_OBJECTS = nohtml.$(OBJEXT) nohtml_OBJECTS = $(am_nohtml_OBJECTS) @@ -1098,7 +1099,7 @@ nohtml_LDADD = $(LDADD) nohtml_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_noreturn_OBJECTS = noreturn.$(OBJEXT) noreturn_OBJECTS = $(am_noreturn_OBJECTS) @@ -1106,7 +1107,7 @@ noreturn_LDADD = $(LDADD) noreturn_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_nospace_OBJECTS = nospace.$(OBJEXT) nospace_OBJECTS = $(am_nospace_OBJECTS) @@ -1114,7 +1115,7 @@ nospace_LDADD = $(LDADD) nospace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_notab_OBJECTS = notab.$(OBJEXT) notab_OBJECTS = $(am_notab_OBJECTS) @@ -1122,7 +1123,7 @@ notab_LDADD = $(LDADD) notab_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_notseq_OBJECTS = notseq.$(OBJEXT) notseq_OBJECTS = $(am_notseq_OBJECTS) @@ -1130,7 +1131,7 @@ notseq_LDADD = $(LDADD) notseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_nthseq_OBJECTS = nthseq.$(OBJEXT) nthseq_OBJECTS = $(am_nthseq_OBJECTS) @@ -1138,7 +1139,7 @@ nthseq_LDADD = $(LDADD) nthseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_nthseqset_OBJECTS = nthseqset.$(OBJEXT) nthseqset_OBJECTS = $(am_nthseqset_OBJECTS) @@ -1147,14 +1148,14 @@ nthseqset_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_octanol_OBJECTS = octanol.$(OBJEXT) octanol_OBJECTS = $(am_octanol_OBJECTS) octanol_LDADD = $(LDADD) octanol_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_oddcomp_OBJECTS = oddcomp.$(OBJEXT) oddcomp_OBJECTS = $(am_oddcomp_OBJECTS) @@ -1162,7 +1163,7 @@ oddcomp_LDADD = $(LDADD) oddcomp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_origsplitter_OBJECTS = origsplitter.$(OBJEXT) origsplitter_OBJECTS = $(am_origsplitter_OBJECTS) @@ -1171,7 +1172,7 @@ origsplitter_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_origunion_OBJECTS = origunion.$(OBJEXT) origunion_OBJECTS = $(am_origunion_OBJECTS) origunion_LDADD = $(LDADD) @@ -1179,7 +1180,7 @@ origunion_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_palindrome_OBJECTS = palindrome.$(OBJEXT) palindrome_OBJECTS = $(am_palindrome_OBJECTS) palindrome_LDADD = $(LDADD) @@ -1187,14 +1188,14 @@ palindrome_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_pasteseq_OBJECTS = pasteseq.$(OBJEXT) pasteseq_OBJECTS = $(am_pasteseq_OBJECTS) pasteseq_LDADD = $(LDADD) pasteseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_patmatdb_OBJECTS = patmatdb.$(OBJEXT) patmatdb_OBJECTS = $(am_patmatdb_OBJECTS) @@ -1202,7 +1203,7 @@ patmatdb_LDADD = $(LDADD) patmatdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_patmatmotifs_OBJECTS = patmatmotifs.$(OBJEXT) patmatmotifs_OBJECTS = $(am_patmatmotifs_OBJECTS) @@ -1211,7 +1212,7 @@ patmatmotifs_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_patmattest_OBJECTS = patmattest.$(OBJEXT) patmattest_OBJECTS = $(am_patmattest_OBJECTS) patmattest_LDADD = $(LDADD) @@ -1219,14 +1220,14 @@ patmattest_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_pepcoil_OBJECTS = pepcoil.$(OBJEXT) pepcoil_OBJECTS = $(am_pepcoil_OBJECTS) pepcoil_LDADD = $(LDADD) pepcoil_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_pepinfo_OBJECTS = pepinfo.$(OBJEXT) pepinfo_OBJECTS = $(am_pepinfo_OBJECTS) @@ -1234,7 +1235,7 @@ pepinfo_LDADD = $(LDADD) pepinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_pepnet_OBJECTS = pepnet.$(OBJEXT) pepnet_OBJECTS = $(am_pepnet_OBJECTS) @@ -1242,7 +1243,7 @@ pepnet_LDADD = $(LDADD) pepnet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_pepstats_OBJECTS = pepstats.$(OBJEXT) pepstats_OBJECTS = $(am_pepstats_OBJECTS) @@ -1250,7 +1251,7 @@ pepstats_LDADD = $(LDADD) pepstats_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_pepwheel_OBJECTS = pepwheel.$(OBJEXT) pepwheel_OBJECTS = $(am_pepwheel_OBJECTS) @@ -1258,7 +1259,7 @@ pepwheel_LDADD = $(LDADD) pepwheel_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_pepwindow_OBJECTS = pepwindow.$(OBJEXT) pepwindow_OBJECTS = $(am_pepwindow_OBJECTS) @@ -1267,7 +1268,7 @@ pepwindow_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_pepwindowall_OBJECTS = pepwindowall.$(OBJEXT) pepwindowall_OBJECTS = $(am_pepwindowall_OBJECTS) pepwindowall_LDADD = $(LDADD) @@ -1275,14 +1276,14 @@ pepwindowall_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_plotcon_OBJECTS = plotcon.$(OBJEXT) plotcon_OBJECTS = $(am_plotcon_OBJECTS) plotcon_LDADD = $(LDADD) plotcon_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_plotorf_OBJECTS = plotorf.$(OBJEXT) plotorf_OBJECTS = $(am_plotorf_OBJECTS) @@ -1290,7 +1291,7 @@ plotorf_LDADD = $(LDADD) plotorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_polydot_OBJECTS = polydot.$(OBJEXT) polydot_OBJECTS = $(am_polydot_OBJECTS) @@ -1298,7 +1299,7 @@ polydot_LDADD = $(LDADD) polydot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_preg_OBJECTS = preg.$(OBJEXT) preg_OBJECTS = $(am_preg_OBJECTS) @@ -1306,7 +1307,7 @@ preg_LDADD = $(LDADD) preg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_prettyplot_OBJECTS = prettyplot.$(OBJEXT) prettyplot_OBJECTS = $(am_prettyplot_OBJECTS) @@ -1315,7 +1316,7 @@ prettyplot_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_prettyseq_OBJECTS = prettyseq.$(OBJEXT) prettyseq_OBJECTS = $(am_prettyseq_OBJECTS) prettyseq_LDADD = $(LDADD) @@ -1323,14 +1324,14 @@ prettyseq_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_prima_OBJECTS = prima.$(OBJEXT) prima_OBJECTS = $(am_prima_OBJECTS) prima_LDADD = $(LDADD) prima_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_primers_OBJECTS = primers.$(OBJEXT) primers_OBJECTS = $(am_primers_OBJECTS) @@ -1338,7 +1339,7 @@ primers_LDADD = $(LDADD) primers_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_primersearch_OBJECTS = primersearch.$(OBJEXT) primersearch_OBJECTS = $(am_primersearch_OBJECTS) @@ -1347,7 +1348,7 @@ primersearch_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_printsextract_OBJECTS = printsextract.$(OBJEXT) printsextract_OBJECTS = $(am_printsextract_OBJECTS) printsextract_LDADD = $(LDADD) @@ -1355,14 +1356,14 @@ printsextract_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_profit_OBJECTS = profit.$(OBJEXT) profit_OBJECTS = $(am_profit_OBJECTS) profit_LDADD = $(LDADD) profit_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_prophecy_OBJECTS = prophecy.$(OBJEXT) prophecy_OBJECTS = $(am_prophecy_OBJECTS) @@ -1370,7 +1371,7 @@ prophecy_LDADD = $(LDADD) prophecy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_prophet_OBJECTS = prophet.$(OBJEXT) prophet_OBJECTS = $(am_prophet_OBJECTS) @@ -1378,7 +1379,7 @@ prophet_LDADD = $(LDADD) prophet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_prosextract_OBJECTS = prosextract.$(OBJEXT) prosextract_OBJECTS = $(am_prosextract_OBJECTS) @@ -1387,14 +1388,14 @@ prosextract_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_pscan_OBJECTS = pscan.$(OBJEXT) pscan_OBJECTS = $(am_pscan_OBJECTS) pscan_LDADD = $(LDADD) pscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_psiphi_OBJECTS = psiphi.$(OBJEXT) psiphi_OBJECTS = $(am_psiphi_OBJECTS) @@ -1402,7 +1403,7 @@ psiphi_LDADD = $(LDADD) psiphi_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_rebaseextract_OBJECTS = rebaseextract.$(OBJEXT) rebaseextract_OBJECTS = $(am_rebaseextract_OBJECTS) @@ -1411,14 +1412,14 @@ rebaseextract_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_recoder_OBJECTS = recoder.$(OBJEXT) recoder_OBJECTS = $(am_recoder_OBJECTS) recoder_LDADD = $(LDADD) recoder_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_redata_OBJECTS = redata.$(OBJEXT) redata_OBJECTS = $(am_redata_OBJECTS) @@ -1426,7 +1427,7 @@ redata_LDADD = $(LDADD) redata_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_remap_OBJECTS = remap.$(OBJEXT) remap_OBJECTS = $(am_remap_OBJECTS) @@ -1434,7 +1435,7 @@ remap_LDADD = $(LDADD) remap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_restover_OBJECTS = restover.$(OBJEXT) restover_OBJECTS = $(am_restover_OBJECTS) @@ -1442,7 +1443,7 @@ restover_LDADD = $(LDADD) restover_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_restrict_OBJECTS = restrict.$(OBJEXT) restrict_OBJECTS = $(am_restrict_OBJECTS) @@ -1450,7 +1451,7 @@ restrict_LDADD = $(LDADD) restrict_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_revseq_OBJECTS = revseq.$(OBJEXT) revseq_OBJECTS = $(am_revseq_OBJECTS) @@ -1458,7 +1459,7 @@ revseq_LDADD = $(LDADD) revseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_seealso_OBJECTS = seealso.$(OBJEXT) seealso_OBJECTS = $(am_seealso_OBJECTS) @@ -1466,7 +1467,7 @@ seealso_LDADD = $(LDADD) seealso_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_seqinfo_OBJECTS = seqinfo.$(OBJEXT) seqinfo_OBJECTS = $(am_seqinfo_OBJECTS) @@ -1474,7 +1475,7 @@ seqinfo_LDADD = $(LDADD) seqinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_seqmatchall_OBJECTS = seqmatchall.$(OBJEXT) seqmatchall_OBJECTS = $(am_seqmatchall_OBJECTS) @@ -1483,14 +1484,14 @@ seqmatchall_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_seqret_OBJECTS = seqret.$(OBJEXT) seqret_OBJECTS = $(am_seqret_OBJECTS) seqret_LDADD = $(LDADD) seqret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_seqretall_OBJECTS = seqretall.$(OBJEXT) seqretall_OBJECTS = $(am_seqretall_OBJECTS) @@ -1499,7 +1500,7 @@ seqretall_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_seqretallfeat_OBJECTS = seqretallfeat.$(OBJEXT) seqretallfeat_OBJECTS = $(am_seqretallfeat_OBJECTS) seqretallfeat_LDADD = $(LDADD) @@ -1507,7 +1508,7 @@ seqretallfeat_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_seqretset_OBJECTS = seqretset.$(OBJEXT) seqretset_OBJECTS = $(am_seqretset_OBJECTS) seqretset_LDADD = $(LDADD) @@ -1515,7 +1516,7 @@ seqretset_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_seqretsetall_OBJECTS = seqretsetall.$(OBJEXT) seqretsetall_OBJECTS = $(am_seqretsetall_OBJECTS) seqretsetall_LDADD = $(LDADD) @@ -1523,7 +1524,7 @@ seqretsetall_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_seqretsingle_OBJECTS = seqretsingle.$(OBJEXT) seqretsingle_OBJECTS = $(am_seqretsingle_OBJECTS) seqretsingle_LDADD = $(LDADD) @@ -1531,7 +1532,7 @@ seqretsingle_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_seqretsplit_OBJECTS = seqretsplit.$(OBJEXT) seqretsplit_OBJECTS = $(am_seqretsplit_OBJECTS) seqretsplit_LDADD = $(LDADD) @@ -1539,7 +1540,7 @@ seqretsplit_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_seqrettype_OBJECTS = seqrettype.$(OBJEXT) seqrettype_OBJECTS = $(am_seqrettype_OBJECTS) seqrettype_LDADD = $(LDADD) @@ -1547,7 +1548,7 @@ seqrettype_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_showalign_OBJECTS = showalign.$(OBJEXT) showalign_OBJECTS = $(am_showalign_OBJECTS) showalign_LDADD = $(LDADD) @@ -1555,14 +1556,14 @@ showalign_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_showdb_OBJECTS = showdb.$(OBJEXT) showdb_OBJECTS = $(am_showdb_OBJECTS) showdb_LDADD = $(LDADD) showdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_showfeat_OBJECTS = showfeat.$(OBJEXT) showfeat_OBJECTS = $(am_showfeat_OBJECTS) @@ -1570,7 +1571,7 @@ showfeat_LDADD = $(LDADD) showfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_showorf_OBJECTS = showorf.$(OBJEXT) showorf_OBJECTS = $(am_showorf_OBJECTS) @@ -1578,7 +1579,7 @@ showorf_LDADD = $(LDADD) showorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_showpep_OBJECTS = showpep.$(OBJEXT) showpep_OBJECTS = $(am_showpep_OBJECTS) @@ -1586,7 +1587,7 @@ showpep_LDADD = $(LDADD) showpep_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_showseq_OBJECTS = showseq.$(OBJEXT) showseq_OBJECTS = $(am_showseq_OBJECTS) @@ -1594,7 +1595,7 @@ showseq_LDADD = $(LDADD) showseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_shuffleseq_OBJECTS = shuffleseq.$(OBJEXT) shuffleseq_OBJECTS = $(am_shuffleseq_OBJECTS) @@ -1603,7 +1604,7 @@ shuffleseq_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_sigcleave_OBJECTS = sigcleave.$(OBJEXT) sigcleave_OBJECTS = $(am_sigcleave_OBJECTS) sigcleave_LDADD = $(LDADD) @@ -1611,14 +1612,14 @@ sigcleave_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_silent_OBJECTS = silent.$(OBJEXT) silent_OBJECTS = $(am_silent_OBJECTS) silent_LDADD = $(LDADD) silent_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_sirna_OBJECTS = sirna.$(OBJEXT) sirna_OBJECTS = $(am_sirna_OBJECTS) @@ -1626,7 +1627,7 @@ sirna_LDADD = $(LDADD) sirna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_sixpack_OBJECTS = sixpack.$(OBJEXT) sixpack_OBJECTS = $(am_sixpack_OBJECTS) @@ -1634,7 +1635,7 @@ sixpack_LDADD = $(LDADD) sixpack_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_sizeseq_OBJECTS = sizeseq.$(OBJEXT) sizeseq_OBJECTS = $(am_sizeseq_OBJECTS) @@ -1642,7 +1643,7 @@ sizeseq_LDADD = $(LDADD) sizeseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_skipredundant_OBJECTS = skipredundant.$(OBJEXT) skipredundant_OBJECTS = $(am_skipredundant_OBJECTS) @@ -1651,14 +1652,14 @@ skipredundant_DEPENDENCIES = ../nucleus/ ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_skipseq_OBJECTS = skipseq.$(OBJEXT) skipseq_OBJECTS = $(am_skipseq_OBJECTS) skipseq_LDADD = $(LDADD) skipseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) splitsource_SOURCES = splitsource.c splitsource_OBJECTS = splitsource.$(OBJEXT) @@ -1667,14 +1668,14 @@ splitsource_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_splitter_OBJECTS = splitter.$(OBJEXT) splitter_OBJECTS = $(am_splitter_OBJECTS) splitter_LDADD = $(LDADD) splitter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_sqltest_OBJECTS = sqltest.$(OBJEXT) sqltest_OBJECTS = $(am_sqltest_OBJECTS) @@ -1682,7 +1683,7 @@ sqltest_LDADD = $(LDADD) sqltest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_stretcher_OBJECTS = stretcher.$(OBJEXT) stretcher_OBJECTS = $(am_stretcher_OBJECTS) @@ -1691,7 +1692,7 @@ stretcher_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_stssearch_OBJECTS = stssearch.$(OBJEXT) stssearch_OBJECTS = $(am_stssearch_OBJECTS) stssearch_LDADD = $(LDADD) @@ -1699,7 +1700,7 @@ stssearch_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_supermatcher_OBJECTS = supermatcher.$(OBJEXT) supermatcher_OBJECTS = $(am_supermatcher_OBJECTS) supermatcher_LDADD = $(LDADD) @@ -1707,14 +1708,14 @@ supermatcher_DEPENDENCIES = ../nucleus/l ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_syco_OBJECTS = syco.$(OBJEXT) syco_OBJECTS = $(am_syco_OBJECTS) syco_LDADD = $(LDADD) syco_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_tcode_OBJECTS = tcode.$(OBJEXT) tcode_OBJECTS = $(am_tcode_OBJECTS) @@ -1722,7 +1723,7 @@ tcode_LDADD = $(LDADD) tcode_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_testplot_OBJECTS = testplot.$(OBJEXT) testplot_OBJECTS = $(am_testplot_OBJECTS) @@ -1730,7 +1731,7 @@ testplot_LDADD = $(LDADD) testplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_textsearch_OBJECTS = textsearch.$(OBJEXT) textsearch_OBJECTS = $(am_textsearch_OBJECTS) @@ -1739,7 +1740,7 @@ textsearch_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_tfextract_OBJECTS = tfextract.$(OBJEXT) tfextract_OBJECTS = $(am_tfextract_OBJECTS) tfextract_LDADD = $(LDADD) @@ -1747,14 +1748,14 @@ tfextract_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_tfm_OBJECTS = tfm.$(OBJEXT) tfm_OBJECTS = $(am_tfm_OBJECTS) tfm_LDADD = $(LDADD) tfm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_tfscan_OBJECTS = tfscan.$(OBJEXT) tfscan_OBJECTS = $(am_tfscan_OBJECTS) @@ -1762,7 +1763,7 @@ tfscan_LDADD = $(LDADD) tfscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_tmap_OBJECTS = tmap.$(OBJEXT) tmap_OBJECTS = $(am_tmap_OBJECTS) @@ -1770,7 +1771,7 @@ tmap_LDADD = $(LDADD) tmap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_tranalign_OBJECTS = tranalign.$(OBJEXT) tranalign_OBJECTS = $(am_tranalign_OBJECTS) @@ -1779,14 +1780,14 @@ tranalign_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_transeq_OBJECTS = transeq.$(OBJEXT) transeq_OBJECTS = $(am_transeq_OBJECTS) transeq_LDADD = $(LDADD) transeq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_treetypedisplay_OBJECTS = treetypedisplay.$(OBJEXT) treetypedisplay_OBJECTS = $(am_treetypedisplay_OBJECTS) @@ -1795,14 +1796,14 @@ treetypedisplay_DEPENDENCIES = ../nucleu ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_trimest_OBJECTS = trimest.$(OBJEXT) trimest_OBJECTS = $(am_trimest_OBJECTS) trimest_LDADD = $(LDADD) trimest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_trimseq_OBJECTS = trimseq.$(OBJEXT) trimseq_OBJECTS = $(am_trimseq_OBJECTS) @@ -1810,7 +1811,7 @@ trimseq_LDADD = $(LDADD) trimseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_trimspace_OBJECTS = trimspace.$(OBJEXT) trimspace_OBJECTS = $(am_trimspace_OBJECTS) @@ -1819,14 +1820,14 @@ trimspace_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_twofeat_OBJECTS = twofeat.$(OBJEXT) twofeat_OBJECTS = $(am_twofeat_OBJECTS) twofeat_LDADD = $(LDADD) twofeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_union_OBJECTS = union.$(OBJEXT) union_OBJECTS = $(am_union_OBJECTS) @@ -1834,7 +1835,7 @@ union_LDADD = $(LDADD) union_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_vectorstrip_OBJECTS = vectorstrip.$(OBJEXT) vectorstrip_OBJECTS = $(am_vectorstrip_OBJECTS) @@ -1843,14 +1844,14 @@ vectorstrip_DEPENDENCIES = ../nucleus/li ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_water_OBJECTS = water.$(OBJEXT) water_OBJECTS = $(am_water_OBJECTS) water_LDADD = $(LDADD) water_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_whichdb_OBJECTS = whichdb.$(OBJEXT) whichdb_OBJECTS = $(am_whichdb_OBJECTS) @@ -1858,7 +1859,7 @@ whichdb_LDADD = $(LDADD) whichdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_wobble_OBJECTS = wobble.$(OBJEXT) wobble_OBJECTS = $(am_wobble_OBJECTS) @@ -1866,7 +1867,7 @@ wobble_LDADD = $(LDADD) wobble_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_wordcount_OBJECTS = wordcount.$(OBJEXT) wordcount_OBJECTS = $(am_wordcount_OBJECTS) @@ -1875,7 +1876,7 @@ wordcount_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_wordfinder_OBJECTS = wordfinder.$(OBJEXT) wordfinder_OBJECTS = $(am_wordfinder_OBJECTS) wordfinder_LDADD = $(LDADD) @@ -1883,7 +1884,7 @@ wordfinder_DEPENDENCIES = ../nucleus/lib ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_wordmatch_OBJECTS = wordmatch.$(OBJEXT) wordmatch_OBJECTS = $(am_wordmatch_OBJECTS) wordmatch_LDADD = $(LDADD) @@ -1891,14 +1892,14 @@ wordmatch_DEPENDENCIES = ../nucleus/libn ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ ../ajax/core/libajax.la ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) am_wossname_OBJECTS = wossname.$(OBJEXT) wossname_OBJECTS = $(am_wossname_OBJECTS) wossname_LDADD = $(LDADD) wossname_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) am_yank_OBJECTS = yank.$(OBJEXT) yank_OBJECTS = $(am_yank_OBJECTS) @@ -1906,7 +1907,7 @@ yank_LDADD = $(LDADD) yank_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ - ../ajax/expat/libeexpat.la ../plplot/libeplplot.la \ + ../ajax/expat/libeexpat.la $(am__DEPENDENCIES_1) \ $(am__DEPENDENCIES_1) DEFAULT_INCLUDES = -I.@am__isrc@ depcomp = $(SHELL) $(top_srcdir)/depcomp @@ -2218,6 +2219,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ @@ -2303,7 +2306,7 @@ INCLUDES = -I$(top_srcdir)/nucleus \ -I$(top_srcdir)/ajax/expat \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ -I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \ - -I$(top_srcdir)/ajax/acd -I$(top_srcdir)/plplot + -I$(top_srcdir)/ajax/acd $(PLPLOT_CFLAGS) aaindexextract_SOURCES = aaindexextract.c abiview_SOURCES = abiview.c @@ -2528,7 +2531,7 @@ LDADD = ../nucleus/libnucleus.la ../ajax ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ ../ajax/expat/libeexpat.la \ - ../plplot/libeplplot.la \ + $(PLPLOT_LIBS) \ $(XLIB) pkgdata_DATA = emboss.default.template diff -up EMBOSS-6.2.0/jemboss/api/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/Makefile.in --- EMBOSS-6.2.0/jemboss/api/Makefile.in.system-plplot 2010-04-07 12:06:27.573735436 -0400 +++ EMBOSS-6.2.0/jemboss/api/Makefile.in 2010-04-07 12:10:24.650735016 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/filetree/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/filetree/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/filetree/Makefile.in.system-plplot 2010-04-07 12:06:27.574735506 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/filetree/Makefile.in 2010-04-07 12:10:25.185735715 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/form/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/form/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/form/Makefile.in.system-plplot 2010-04-07 12:06:27.576736973 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/form/Makefile.in 2010-04-07 12:10:25.285734737 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/Makefile.in.system-plplot 2010-04-07 12:06:27.577738440 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/Makefile.in 2010-04-07 12:10:25.111734737 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile.in.system-plplot 2010-04-07 12:06:27.579735436 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile.in 2010-04-07 12:10:25.429735436 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/startup/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/startup/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/startup/Makefile.in.system-plplot 2010-04-07 12:06:27.580735436 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/gui/startup/Makefile.in 2010-04-07 12:10:25.544736483 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/Makefile.in.system-plplot 2010-04-07 12:06:27.582738230 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/Makefile.in 2010-04-07 12:10:25.033735226 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/acd/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/acd/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/acd/Makefile.in.system-plplot 2010-04-07 12:06:27.584736205 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/acd/Makefile.in 2010-04-07 12:10:25.786735715 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/Makefile.in.system-plplot 2010-04-07 12:06:27.586736554 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/parser/Makefile.in 2010-04-07 12:10:25.676735785 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/programs/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/programs/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/programs/Makefile.in.system-plplot 2010-04-07 12:06:27.587735436 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/programs/Makefile.in 2010-04-07 12:10:25.899736204 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/soap/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/soap/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/soap/Makefile.in.system-plplot 2010-04-07 12:06:27.588734878 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/emboss/jemboss/soap/Makefile.in 2010-04-07 12:10:26.074735785 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/emboss/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/emboss/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/emboss/Makefile.in.system-plplot 2010-04-07 12:06:27.590735506 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/emboss/Makefile.in 2010-04-07 12:10:24.858735156 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/api/org/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/api/org/Makefile.in --- EMBOSS-6.2.0/jemboss/api/org/Makefile.in.system-plplot 2010-04-07 12:06:27.591735366 -0400 +++ EMBOSS-6.2.0/jemboss/api/org/Makefile.in 2010-04-07 12:10:24.724734877 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/images/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/images/Makefile.in --- EMBOSS-6.2.0/jemboss/images/Makefile.in.system-plplot 2010-04-07 12:06:27.592736135 -0400 +++ EMBOSS-6.2.0/jemboss/images/Makefile.in 2010-04-07 12:10:26.210735016 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/lib/axis/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/lib/axis/Makefile.in --- EMBOSS-6.2.0/jemboss/lib/axis/Makefile.in.system-plplot 2010-04-07 12:06:27.594735297 -0400 +++ EMBOSS-6.2.0/jemboss/lib/axis/Makefile.in 2010-04-07 12:10:26.372735924 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/lib/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/lib/Makefile.in --- EMBOSS-6.2.0/jemboss/lib/Makefile.in.system-plplot 2010-04-07 12:06:27.595735297 -0400 +++ EMBOSS-6.2.0/jemboss/lib/Makefile.in 2010-04-07 12:10:26.298734667 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/Makefile.in --- EMBOSS-6.2.0/jemboss/Makefile.in.system-plplot 2010-04-07 12:06:27.597735646 -0400 +++ EMBOSS-6.2.0/jemboss/Makefile.in 2010-04-07 12:10:24.573736064 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/draw/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/draw/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/draw/Makefile.in.system-plplot 2010-04-07 12:06:27.598735297 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/draw/Makefile.in 2010-04-07 12:10:26.781735086 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/editor/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/editor/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/editor/Makefile.in.system-plplot 2010-04-07 12:06:27.599735786 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/editor/Makefile.in 2010-04-07 12:10:26.912735785 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/graphics/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/graphics/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/graphics/Makefile.in.system-plplot 2010-04-07 12:06:27.601735506 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/graphics/Makefile.in 2010-04-07 12:10:27.143749963 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/filetree/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/filetree/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/filetree/Makefile.in.system-plplot 2010-04-07 12:06:27.602735297 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/filetree/Makefile.in 2010-04-07 12:10:27.644735575 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/form/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/form/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/form/Makefile.in.system-plplot 2010-04-07 12:06:27.604735297 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/form/Makefile.in 2010-04-07 12:10:27.782735505 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/Makefile.in.system-plplot 2010-04-07 12:06:27.606735506 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/Makefile.in 2010-04-07 12:10:27.405735156 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile.in.system-plplot 2010-04-07 12:06:27.607736274 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile.in 2010-04-07 12:10:27.907735505 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/startup/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/startup/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/startup/Makefile.in.system-plplot 2010-04-07 12:06:27.608736484 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/startup/Makefile.in 2010-04-07 12:10:28.064734947 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/Makefile.in.system-plplot 2010-04-07 12:06:27.610735506 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/Makefile.in 2010-04-07 12:10:26.671734528 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/acd/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/acd/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/acd/Makefile.in.system-plplot 2010-04-07 12:06:27.611735576 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/acd/Makefile.in 2010-04-07 12:10:28.224735715 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/Makefile.in.system-plplot 2010-04-07 12:06:27.613735157 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/parser/Makefile.in 2010-04-07 12:10:28.143742280 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -181,6 +182,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/programs/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/programs/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/programs/Makefile.in.system-plplot 2010-04-07 12:06:27.614735087 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/programs/Makefile.in 2010-04-07 12:10:28.298735785 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/server/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/server/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/server/Makefile.in.system-plplot 2010-04-07 12:06:27.615739278 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/server/Makefile.in 2010-04-07 12:10:28.382738229 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/jemboss/soap/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/jemboss/soap/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/jemboss/soap/Makefile.in.system-plplot 2010-04-07 12:06:27.617735436 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/jemboss/soap/Makefile.in 2010-04-07 12:10:28.514737601 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/emboss/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/emboss/Makefile.in --- EMBOSS-6.2.0/jemboss/org/emboss/Makefile.in.system-plplot 2010-04-07 12:06:27.618735925 -0400 +++ EMBOSS-6.2.0/jemboss/org/emboss/Makefile.in 2010-04-07 12:10:26.541735226 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/org/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/org/Makefile.in --- EMBOSS-6.2.0/jemboss/org/Makefile.in.system-plplot 2010-04-07 12:06:27.620735436 -0400 +++ EMBOSS-6.2.0/jemboss/org/Makefile.in 2010-04-07 12:10:26.450735156 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/resources/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/resources/Makefile.in --- EMBOSS-6.2.0/jemboss/resources/Makefile.in.system-plplot 2010-04-07 12:06:27.621742979 -0400 +++ EMBOSS-6.2.0/jemboss/resources/Makefile.in 2010-04-07 12:10:28.731735086 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/jemboss/utils/Makefile.in.system-plplot EMBOSS-6.2.0/jemboss/utils/Makefile.in --- EMBOSS-6.2.0/jemboss/utils/Makefile.in.system-plplot 2010-04-07 12:06:27.623736274 -0400 +++ EMBOSS-6.2.0/jemboss/utils/Makefile.in 2010-04-07 12:10:29.021734807 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/m4/plplot.m4.system-plplot EMBOSS-6.2.0/m4/plplot.m4 --- EMBOSS-6.2.0/m4/plplot.m4.system-plplot 2010-04-07 12:06:27.861735297 -0400 +++ EMBOSS-6.2.0/m4/plplot.m4 2010-04-07 12:06:27.861735297 -0400 @@ -0,0 +1,84 @@ +dnl @synopsis CHECK_PLPLOT([PLPLOT_LIBDIR, PLPLOT_INCDIR, +dnl [ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]]) +dnl This macro figures out if the PlPlot library and header files +dnl are installed. +dnl You may wish to use these variables in your default LIBS and CFLAGS: +dnl +dnl LIBS="$PLPLOT_LIBS $LIBS" +dnl CFLAGS="$CFLAGS $PLPLOT_CFLAGS" +dnl +dnl ACTION-IF-FOUND is a list of shell commands to run if PlPlot +dnl is found (HAVE_PLPLOT is defined first), and ACTION-IF-NOT-FOUND +dnl is a list of commands to run it if it is not found. +dnl +dnl @author Emmanuel Bertin + +AC_DEFUN([CHECK_PLPLOT], [ +AC_REQUIRE([AC_CANONICAL_HOST]) + +PLPLOT_LIBS="" +OLIBS="$LIBS" +LIBS="" + +check_plplot_ok=yes +check_plplotpkg_ok=no +if test x$2 = x && test x$1 = x; then + AC_MSG_CHECKING([for PLPlot pkg-config info]) + if pkg-config --exists plplotd; then + AC_MSG_RESULT([yes]) + [PLPLOT_CFLAGS=`pkg-config --cflags plplotd`] + [PLPLOT_LIBS=`pkg-config --libs plplotd`] + AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.]) + AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.]) + check_plplotpkg_ok=yes + else + AC_MSG_RESULT([no]) + fi +fi +if test x$check_plplotpkg_ok = xno; then + if test x$2 = x; then + AC_CHECK_HEADER(plplot.h, [check_plplothead_ok=yes], [check_plplothead_ok=no]) + if test x$check_plplothead_ok = xyes; then + AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.]) + AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.]) + else + AC_CHECK_HEADER(plplot/plplot.h, + [check_plplothead_ok=yes], [check_plplothead_ok=no]) + if test x$check_plplothead_ok = xyes; then + AC_DEFINE(PLPLOT_H, "plplot/plplot.h", [PLPlot header filename.]) + AC_DEFINE(PLPLOTP_H, "plplot/plplotP.h", + [PLPlot private header filename.]) + else + check_plplot_ok=no + fi + fi + else + AC_CHECK_HEADER($2/plplot.h, + [check_plplothead_ok=yes], [check_plplothead_ok=no]) + if test x$check_plplothead_ok = xyes; then + AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.]) + AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.]) + [PLPLOT_CFLAGS="-I$2"] + else + check_plplot_ok=no + fi + fi + if test x$1 = x; then + AC_CHECK_LIB(plplotd, c_plinit,, [check_plplot_ok=no]) + [PLPLOT_LIBS="-lplplotd"] + else + AC_CHECK_LIB(plplotd, c_plinit,, [check_plplot_ok=no], [-L$1]) + [PLPLOT_LIBS="-L$1 -lplplotd"] + fi +fi + +LIBS="$OLIBS" +if test x$check_plplot_ok = xyes; then + AC_SUBST(PLPLOT_CFLAGS) + AC_SUBST(PLPLOT_LIBS) + AC_DEFINE(HAVE_PLPLOT,1, + [Define if you have the PLPlot libraries and header files.]) +fi + +])dnl CHECK_PLPLOT + diff -up EMBOSS-6.2.0/Makefile.am.system-plplot EMBOSS-6.2.0/Makefile.am --- EMBOSS-6.2.0/Makefile.am.system-plplot 2010-01-11 08:15:41.000000000 -0500 +++ EMBOSS-6.2.0/Makefile.am 2010-04-07 12:06:27.862735786 -0400 @@ -5,7 +5,7 @@ ACLOCAL_AMFLAGS = -I m4 AUTOMAKE_OPTIONS = gnits -SUBDIRS = plplot ajax nucleus emboss test doc jemboss +SUBDIRS = ajax nucleus emboss test doc jemboss # AJAX_FIXED_ROOT = \"`pwd`/emboss/acd\" @@ -20,6 +20,5 @@ dist-hook: tar cBf - test | ( cd $(distdir); tar xBf - ; rm -rf test/CVS test/*/CVS ) tar cBf - emboss/acd | ( cd $(distdir); tar xBf - ; cd emboss/acd; rm -rf CVS ) tar cBf - emboss/data | ( cd $(distdir); tar xBf - ; cd emboss/data; rm -rf CVS */CVS */*/CVS ) - tar cBf - plplot/lib | ( cd $(distdir); tar xBf - ; find plplot -name CVS | xargs rm -rf ) tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; ) tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf ) diff -up EMBOSS-6.2.0/Makefile.in.system-plplot EMBOSS-6.2.0/Makefile.in --- EMBOSS-6.2.0/Makefile.in.system-plplot 2010-04-07 12:06:27.624735366 -0400 +++ EMBOSS-6.2.0/Makefile.in 2010-04-07 12:10:30.089735855 -0400 @@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \ @@ -172,6 +173,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ @@ -246,7 +249,7 @@ top_builddir = @top_builddir@ top_srcdir = @top_srcdir@ ACLOCAL_AMFLAGS = -I m4 AUTOMAKE_OPTIONS = gnits -SUBDIRS = plplot ajax nucleus emboss test doc jemboss +SUBDIRS = ajax nucleus emboss test doc jemboss # AJAX_FIXED_ROOT = \"`pwd`/emboss/acd\" @@ -746,7 +749,6 @@ dist-hook: tar cBf - test | ( cd $(distdir); tar xBf - ; rm -rf test/CVS test/*/CVS ) tar cBf - emboss/acd | ( cd $(distdir); tar xBf - ; cd emboss/acd; rm -rf CVS ) tar cBf - emboss/data | ( cd $(distdir); tar xBf - ; cd emboss/data; rm -rf CVS */CVS */*/CVS ) - tar cBf - plplot/lib | ( cd $(distdir); tar xBf - ; find plplot -name CVS | xargs rm -rf ) tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; ) tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf ) diff -up EMBOSS-6.2.0/nucleus/Makefile.am.system-plplot EMBOSS-6.2.0/nucleus/Makefile.am --- EMBOSS-6.2.0/nucleus/Makefile.am.system-plplot 2010-04-07 12:06:27.701735646 -0400 +++ EMBOSS-6.2.0/nucleus/Makefile.am 2010-04-07 12:10:12.747737473 -0400 @@ -20,7 +20,7 @@ CYGWIN_LIBS = -L../plplot -L../ajax/pcre endif -INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \ +INCLUDES = $(PLPLOT_CFLAGS) $(X_CFLAGS) -I$(srcdir)/ \ -I$(top_srcdir)/ajax \ -I$(top_srcdir)/ajax/expat \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ diff -up EMBOSS-6.2.0/nucleus/Makefile.in.system-plplot EMBOSS-6.2.0/nucleus/Makefile.in --- EMBOSS-6.2.0/nucleus/Makefile.in.system-plplot 2010-04-07 12:06:27.703735576 -0400 +++ EMBOSS-6.2.0/nucleus/Makefile.in 2010-04-07 12:10:29.286735994 -0400 @@ -42,8 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -170,6 +171,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ @@ -253,7 +256,7 @@ AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS) @ISCYGWIN_TRUE@-L../ajax/acd -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre \ @ISCYGWIN_TRUE@-lezlib -leplplot -INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \ +INCLUDES = $(PLPLOT_CFLAGS) $(X_CFLAGS) -I$(srcdir)/ \ -I$(top_srcdir)/ajax \ -I$(top_srcdir)/ajax/expat \ -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ diff -up EMBOSS-6.2.0/test/data/Makefile.in.system-plplot EMBOSS-6.2.0/test/data/Makefile.in --- EMBOSS-6.2.0/test/data/Makefile.in.system-plplot 2010-04-07 12:06:27.631735297 -0400 +++ EMBOSS-6.2.0/test/data/Makefile.in 2010-04-07 12:10:29.488738718 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/test/embl/Makefile.in.system-plplot EMBOSS-6.2.0/test/embl/Makefile.in --- EMBOSS-6.2.0/test/embl/Makefile.in.system-plplot 2010-04-07 12:06:27.632735855 -0400 +++ EMBOSS-6.2.0/test/embl/Makefile.in 2010-04-07 12:10:29.559736972 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/test/genbank/Makefile.in.system-plplot EMBOSS-6.2.0/test/genbank/Makefile.in --- EMBOSS-6.2.0/test/genbank/Makefile.in.system-plplot 2010-04-07 12:06:27.634742560 -0400 +++ EMBOSS-6.2.0/test/genbank/Makefile.in 2010-04-07 12:10:29.630735715 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/test/Makefile.in.system-plplot EMBOSS-6.2.0/test/Makefile.in --- EMBOSS-6.2.0/test/Makefile.in.system-plplot 2010-04-07 12:06:27.635735576 -0400 +++ EMBOSS-6.2.0/test/Makefile.in 2010-04-07 12:10:29.396734528 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -157,6 +158,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/test/pir/Makefile.in.system-plplot EMBOSS-6.2.0/test/pir/Makefile.in --- EMBOSS-6.2.0/test/pir/Makefile.in.system-plplot 2010-04-07 12:06:27.637735297 -0400 +++ EMBOSS-6.2.0/test/pir/Makefile.in 2010-04-07 12:10:29.702735436 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/test/swiss/Makefile.in.system-plplot EMBOSS-6.2.0/test/swiss/Makefile.in --- EMBOSS-6.2.0/test/swiss/Makefile.in.system-plplot 2010-04-07 12:06:27.638737881 -0400 +++ EMBOSS-6.2.0/test/swiss/Makefile.in 2010-04-07 12:10:29.775738229 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/test/swnew/Makefile.in.system-plplot EMBOSS-6.2.0/test/swnew/Makefile.in --- EMBOSS-6.2.0/test/swnew/Makefile.in.system-plplot 2010-04-07 12:06:27.639735716 -0400 +++ EMBOSS-6.2.0/test/swnew/Makefile.in 2010-04-07 12:10:29.847735715 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@ diff -up EMBOSS-6.2.0/test/testdb/Makefile.in.system-plplot EMBOSS-6.2.0/test/testdb/Makefile.in --- EMBOSS-6.2.0/test/testdb/Makefile.in.system-plplot 2010-04-07 12:06:27.641735436 -0400 +++ EMBOSS-6.2.0/test/testdb/Makefile.in 2010-04-07 12:10:29.964735575 -0400 @@ -39,8 +39,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/java.m4 \ $(top_srcdir)/m4/lf_x11.m4 $(top_srcdir)/m4/mysql.m4 \ - $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ - $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + $(top_srcdir)/m4/plplot.m4 $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ $(ACLOCAL_M4) mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs @@ -141,6 +142,8 @@ PACKAGE_URL = @PACKAGE_URL@ PACKAGE_VERSION = @PACKAGE_VERSION@ PATH_SEPARATOR = @PATH_SEPARATOR@ PG_CONFIG = @PG_CONFIG@ +PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ +PLPLOT_LIBS = @PLPLOT_LIBS@ POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ POSTGRESQL_VERSION = @POSTGRESQL_VERSION@