diff --git a/EMBOSS-6.3.1-prevent-autotooling.patch b/EMBOSS-6.3.1-prevent-autotooling.patch new file mode 100644 index 0000000..afd3b89 --- /dev/null +++ b/EMBOSS-6.3.1-prevent-autotooling.patch @@ -0,0 +1,22568 @@ +diff -urP EMBOSS-6.3.1.orig/ajax/acd/Makefile.in EMBOSS-6.3.1/ajax/acd/Makefile.in +--- EMBOSS-6.3.1.orig/ajax/acd/Makefile.in 2010-08-02 17:23:03.929163054 -0400 ++++ EMBOSS-6.3.1/ajax/acd/Makefile.in 2010-08-02 17:23:23.136143079 -0400 +@@ -130,6 +130,8 @@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ ++HAVE_MEMMOVE = @HAVE_MEMMOVE@ ++HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +diff -urP EMBOSS-6.3.1.orig/ajax/ajaxdb/Makefile.in EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in +--- EMBOSS-6.3.1.orig/ajax/ajaxdb/Makefile.in 2010-08-02 17:23:03.930162985 -0400 ++++ EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in 2010-08-02 17:23:23.228143498 -0400 +@@ -43,9 +43,8 @@ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ +- $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -131,6 +130,8 @@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ ++HAVE_MEMMOVE = @HAVE_MEMMOVE@ ++HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +@@ -259,7 +260,7 @@ + @ISCYGWIN_TRUE@-L../ensembl -lensembl lajax -leplplot -leexpat -lepcre -lezlib + + @ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot +-INCLUDES = $(PLPLOT_CFLAGS) \ ++INCLUDES = $(PLPLOT_CFLAGS) \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl + +diff -urP EMBOSS-6.3.1.orig/ajax/core/Makefile.in EMBOSS-6.3.1/ajax/core/Makefile.in +--- EMBOSS-6.3.1.orig/ajax/core/Makefile.in 2010-08-02 17:23:03.931143219 -0400 ++++ EMBOSS-6.3.1/ajax/core/Makefile.in 2010-08-02 17:23:23.331143149 -0400 +@@ -43,9 +43,8 @@ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ +- $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -140,6 +139,8 @@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ ++HAVE_MEMMOVE = @HAVE_MEMMOVE@ ++HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +diff -urP EMBOSS-6.3.1.orig/ajax/ensembl/Makefile.in EMBOSS-6.3.1/ajax/ensembl/Makefile.in +--- EMBOSS-6.3.1.orig/ajax/ensembl/Makefile.in 2010-08-02 17:23:03.932150483 -0400 ++++ EMBOSS-6.3.1/ajax/ensembl/Makefile.in 2010-08-02 17:23:23.433143079 -0400 +@@ -43,9 +43,8 @@ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ +- $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -144,6 +143,8 @@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ ++HAVE_MEMMOVE = @HAVE_MEMMOVE@ ++HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +diff -urP EMBOSS-6.3.1.orig/ajax/graphics/Makefile.in EMBOSS-6.3.1/ajax/graphics/Makefile.in +--- EMBOSS-6.3.1.orig/ajax/graphics/Makefile.in 2010-08-02 17:23:03.937163613 -0400 ++++ EMBOSS-6.3.1/ajax/graphics/Makefile.in 2010-08-02 17:23:23.525143079 -0400 +@@ -43,9 +43,8 @@ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ +- $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -131,6 +130,8 @@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ ++HAVE_MEMMOVE = @HAVE_MEMMOVE@ ++HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +diff -urP EMBOSS-6.3.1.orig/ajax/Makefile.in EMBOSS-6.3.1/ajax/Makefile.in +--- EMBOSS-6.3.1.orig/ajax/Makefile.in 2010-08-02 17:23:03.937163613 -0400 ++++ EMBOSS-6.3.1/ajax/Makefile.in 2010-08-02 17:23:23.040142730 -0400 +@@ -40,9 +40,8 @@ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ +- $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -64,7 +63,7 @@ + distdir + ETAGS = etags + CTAGS = ctags +-DIST_SUBDIRS = pcre expat zlib core graphics ensembl ajaxdb acd ++DIST_SUBDIRS = expat zlib pcre core graphics ensembl ajaxdb acd + DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST) + am__relativize = \ + dir0=`pwd`; \ +@@ -122,6 +121,8 @@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ ++HAVE_MEMMOVE = @HAVE_MEMMOVE@ ++HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +diff -urP EMBOSS-6.3.1.orig/autom4te.cache/output.0 EMBOSS-6.3.1/autom4te.cache/output.0 +--- EMBOSS-6.3.1.orig/autom4te.cache/output.0 1969-12-31 19:00:00.000000000 -0500 ++++ EMBOSS-6.3.1/autom4te.cache/output.0 2010-08-02 17:23:22.875143219 -0400 +@@ -0,0 +1,17831 @@ ++@%:@! /bin/sh ++@%:@ Guess values for system-dependent variables and create Makefiles. ++@%:@ Generated by GNU Autoconf 2.65. ++@%:@ ++@%:@ ++@%:@ Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001, ++@%:@ 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation, ++@%:@ Inc. ++@%:@ ++@%:@ ++@%:@ This configure script is free software; the Free Software Foundation ++@%:@ gives unlimited permission to copy, distribute and modify it. ++## -------------------- ## ++## M4sh Initialization. ## ++## -------------------- ## ++ ++# Be more Bourne compatible ++DUALCASE=1; export DUALCASE # for MKS sh ++if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then : ++ emulate sh ++ NULLCMD=: ++ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which ++ # is contrary to our usage. Disable this feature. ++ alias -g '${1+"$@"}'='"$@"' ++ setopt NO_GLOB_SUBST ++else ++ case `(set -o) 2>/dev/null` in @%:@( ++ *posix*) : ++ set -o posix ;; @%:@( ++ *) : ++ ;; ++esac ++fi ++ ++ ++as_nl=' ++' ++export as_nl ++# Printing a long string crashes Solaris 7 /usr/bin/printf. ++as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\' ++as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo ++as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo ++# Prefer a ksh shell builtin over an external printf program on Solaris, ++# but without wasting forks for bash or zsh. ++if test -z "$BASH_VERSION$ZSH_VERSION" \ ++ && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then ++ as_echo='print -r --' ++ as_echo_n='print -rn --' ++elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then ++ as_echo='printf %s\n' ++ as_echo_n='printf %s' ++else ++ if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then ++ as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"' ++ as_echo_n='/usr/ucb/echo -n' ++ else ++ as_echo_body='eval expr "X$1" : "X\\(.*\\)"' ++ as_echo_n_body='eval ++ arg=$1; ++ case $arg in @%:@( ++ *"$as_nl"*) ++ expr "X$arg" : "X\\(.*\\)$as_nl"; ++ arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;; ++ esac; ++ expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl" ++ ' ++ export as_echo_n_body ++ as_echo_n='sh -c $as_echo_n_body as_echo' ++ fi ++ export as_echo_body ++ as_echo='sh -c $as_echo_body as_echo' ++fi ++ ++# The user is always right. ++if test "${PATH_SEPARATOR+set}" != set; then ++ PATH_SEPARATOR=: ++ (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && { ++ (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 || ++ PATH_SEPARATOR=';' ++ } ++fi ++ ++ ++# IFS ++# We need space, tab and new line, in precisely that order. Quoting is ++# there to prevent editors from complaining about space-tab. ++# (If _AS_PATH_WALK were called with IFS unset, it would disable word ++# splitting by setting IFS to empty value.) ++IFS=" "" $as_nl" ++ ++# Find who we are. Look in the path if we contain no directory separator. ++case $0 in @%:@(( ++ *[\\/]* ) as_myself=$0 ;; ++ *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break ++ done ++IFS=$as_save_IFS ++ ++ ;; ++esac ++# We did not find ourselves, most probably we were run as `sh COMMAND' ++# in which case we are not to be found in the path. ++if test "x$as_myself" = x; then ++ as_myself=$0 ++fi ++if test ! -f "$as_myself"; then ++ $as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2 ++ exit 1 ++fi ++ ++# Unset variables that we do not need and which cause bugs (e.g. in ++# pre-3.0 UWIN ksh). But do not cause bugs in bash 2.01; the "|| exit 1" ++# suppresses any "Segmentation fault" message there. '((' could ++# trigger a bug in pdksh 5.2.14. ++for as_var in BASH_ENV ENV MAIL MAILPATH ++do eval test x\${$as_var+set} = xset \ ++ && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || : ++done ++PS1='$ ' ++PS2='> ' ++PS4='+ ' ++ ++# NLS nuisances. ++LC_ALL=C ++export LC_ALL ++LANGUAGE=C ++export LANGUAGE ++ ++# CDPATH. ++(unset CDPATH) >/dev/null 2>&1 && unset CDPATH ++ ++if test "x$CONFIG_SHELL" = x; then ++ as_bourne_compatible="if test -n \"\${ZSH_VERSION+set}\" && (emulate sh) >/dev/null 2>&1; then : ++ emulate sh ++ NULLCMD=: ++ # Pre-4.2 versions of Zsh do word splitting on \${1+\"\$@\"}, which ++ # is contrary to our usage. Disable this feature. ++ alias -g '\${1+\"\$@\"}'='\"\$@\"' ++ setopt NO_GLOB_SUBST ++else ++ case \`(set -o) 2>/dev/null\` in @%:@( ++ *posix*) : ++ set -o posix ;; @%:@( ++ *) : ++ ;; ++esac ++fi ++" ++ as_required="as_fn_return () { (exit \$1); } ++as_fn_success () { as_fn_return 0; } ++as_fn_failure () { as_fn_return 1; } ++as_fn_ret_success () { return 0; } ++as_fn_ret_failure () { return 1; } ++ ++exitcode=0 ++as_fn_success || { exitcode=1; echo as_fn_success failed.; } ++as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; } ++as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; } ++as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; } ++if ( set x; as_fn_ret_success y && test x = \"\$1\" ); then : ++ ++else ++ exitcode=1; echo positional parameters were not saved. ++fi ++test x\$exitcode = x0 || exit 1" ++ as_suggested=" as_lineno_1=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_1a=\$LINENO ++ as_lineno_2=";as_suggested=$as_suggested$LINENO;as_suggested=$as_suggested" as_lineno_2a=\$LINENO ++ eval 'test \"x\$as_lineno_1'\$as_run'\" != \"x\$as_lineno_2'\$as_run'\" && ++ test \"x\`expr \$as_lineno_1'\$as_run' + 1\`\" = \"x\$as_lineno_2'\$as_run'\"' || exit 1 ++test \$(( 1 + 1 )) = 2 || exit 1" ++ if (eval "$as_required") 2>/dev/null; then : ++ as_have_required=yes ++else ++ as_have_required=no ++fi ++ if test x$as_have_required = xyes && (eval "$as_suggested") 2>/dev/null; then : ++ ++else ++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++as_found=false ++for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ as_found=: ++ case $as_dir in @%:@( ++ /*) ++ for as_base in sh bash ksh sh5; do ++ # Try only shells that exist, to save several forks. ++ as_shell=$as_dir/$as_base ++ if { test -f "$as_shell" || test -f "$as_shell.exe"; } && ++ { $as_echo "$as_bourne_compatible""$as_required" | as_run=a "$as_shell"; } 2>/dev/null; then : ++ CONFIG_SHELL=$as_shell as_have_required=yes ++ if { $as_echo "$as_bourne_compatible""$as_suggested" | as_run=a "$as_shell"; } 2>/dev/null; then : ++ break 2 ++fi ++fi ++ done;; ++ esac ++ as_found=false ++done ++$as_found || { if { test -f "$SHELL" || test -f "$SHELL.exe"; } && ++ { $as_echo "$as_bourne_compatible""$as_required" | as_run=a "$SHELL"; } 2>/dev/null; then : ++ CONFIG_SHELL=$SHELL as_have_required=yes ++fi; } ++IFS=$as_save_IFS ++ ++ ++ if test "x$CONFIG_SHELL" != x; then : ++ # We cannot yet assume a decent shell, so we have to provide a ++ # neutralization value for shells without unset; and this also ++ # works around shells that cannot unset nonexistent variables. ++ BASH_ENV=/dev/null ++ ENV=/dev/null ++ (unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV ++ export CONFIG_SHELL ++ exec "$CONFIG_SHELL" "$as_myself" ${1+"$@"} ++fi ++ ++ if test x$as_have_required = xno; then : ++ $as_echo "$0: This script requires a shell more modern than all" ++ $as_echo "$0: the shells that I found on your system." ++ if test x${ZSH_VERSION+set} = xset ; then ++ $as_echo "$0: In particular, zsh $ZSH_VERSION has bugs and should" ++ $as_echo "$0: be upgraded to zsh 4.3.4 or later." ++ else ++ $as_echo "$0: Please tell bug-autoconf@gnu.org about your system, ++$0: including any error possibly output before this ++$0: message. Then install a modern shell, or manually run ++$0: the script under such a shell if you do have one." ++ fi ++ exit 1 ++fi ++fi ++fi ++SHELL=${CONFIG_SHELL-/bin/sh} ++export SHELL ++# Unset more variables known to interfere with behavior of common tools. ++CLICOLOR_FORCE= GREP_OPTIONS= ++unset CLICOLOR_FORCE GREP_OPTIONS ++ ++## --------------------- ## ++## M4sh Shell Functions. ## ++## --------------------- ## ++@%:@ as_fn_unset VAR ++@%:@ --------------- ++@%:@ Portably unset VAR. ++as_fn_unset () ++{ ++ { eval $1=; unset $1;} ++} ++as_unset=as_fn_unset ++ ++@%:@ as_fn_set_status STATUS ++@%:@ ----------------------- ++@%:@ Set @S|@? to STATUS, without forking. ++as_fn_set_status () ++{ ++ return $1 ++} @%:@ as_fn_set_status ++ ++@%:@ as_fn_exit STATUS ++@%:@ ----------------- ++@%:@ Exit the shell with STATUS, even in a "trap 0" or "set -e" context. ++as_fn_exit () ++{ ++ set +e ++ as_fn_set_status $1 ++ exit $1 ++} @%:@ as_fn_exit ++ ++@%:@ as_fn_mkdir_p ++@%:@ ------------- ++@%:@ Create "@S|@as_dir" as a directory, including parents if necessary. ++as_fn_mkdir_p () ++{ ++ ++ case $as_dir in #( ++ -*) as_dir=./$as_dir;; ++ esac ++ test -d "$as_dir" || eval $as_mkdir_p || { ++ as_dirs= ++ while :; do ++ case $as_dir in #( ++ *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'( ++ *) as_qdir=$as_dir;; ++ esac ++ as_dirs="'$as_qdir' $as_dirs" ++ as_dir=`$as_dirname -- "$as_dir" || ++$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ ++ X"$as_dir" : 'X\(//\)[^/]' \| \ ++ X"$as_dir" : 'X\(//\)$' \| \ ++ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null || ++$as_echo X"$as_dir" | ++ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ ++ s//\1/ ++ q ++ } ++ /^X\(\/\/\)[^/].*/{ ++ s//\1/ ++ q ++ } ++ /^X\(\/\/\)$/{ ++ s//\1/ ++ q ++ } ++ /^X\(\/\).*/{ ++ s//\1/ ++ q ++ } ++ s/.*/./; q'` ++ test -d "$as_dir" && break ++ done ++ test -z "$as_dirs" || eval "mkdir $as_dirs" ++ } || test -d "$as_dir" || as_fn_error "cannot create directory $as_dir" ++ ++ ++} @%:@ as_fn_mkdir_p ++@%:@ as_fn_append VAR VALUE ++@%:@ ---------------------- ++@%:@ Append the text in VALUE to the end of the definition contained in VAR. Take ++@%:@ advantage of any shell optimizations that allow amortized linear growth over ++@%:@ repeated appends, instead of the typical quadratic growth present in naive ++@%:@ implementations. ++if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then : ++ eval 'as_fn_append () ++ { ++ eval $1+=\$2 ++ }' ++else ++ as_fn_append () ++ { ++ eval $1=\$$1\$2 ++ } ++fi # as_fn_append ++ ++@%:@ as_fn_arith ARG... ++@%:@ ------------------ ++@%:@ Perform arithmetic evaluation on the ARGs, and store the result in the ++@%:@ global @S|@as_val. Take advantage of shells that can avoid forks. The arguments ++@%:@ must be portable across @S|@(()) and expr. ++if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then : ++ eval 'as_fn_arith () ++ { ++ as_val=$(( $* )) ++ }' ++else ++ as_fn_arith () ++ { ++ as_val=`expr "$@" || test $? -eq 1` ++ } ++fi # as_fn_arith ++ ++ ++@%:@ as_fn_error ERROR [LINENO LOG_FD] ++@%:@ --------------------------------- ++@%:@ Output "`basename @S|@0`: error: ERROR" to stderr. If LINENO and LOG_FD are ++@%:@ provided, also output the error to LOG_FD, referencing LINENO. Then exit the ++@%:@ script with status @S|@?, using 1 if that was 0. ++as_fn_error () ++{ ++ as_status=$?; test $as_status -eq 0 && as_status=1 ++ if test "$3"; then ++ as_lineno=${as_lineno-"$2"} as_lineno_stack=as_lineno_stack=$as_lineno_stack ++ $as_echo "$as_me:${as_lineno-$LINENO}: error: $1" >&$3 ++ fi ++ $as_echo "$as_me: error: $1" >&2 ++ as_fn_exit $as_status ++} @%:@ as_fn_error ++ ++if expr a : '\(a\)' >/dev/null 2>&1 && ++ test "X`expr 00001 : '.*\(...\)'`" = X001; then ++ as_expr=expr ++else ++ as_expr=false ++fi ++ ++if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then ++ as_basename=basename ++else ++ as_basename=false ++fi ++ ++if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then ++ as_dirname=dirname ++else ++ as_dirname=false ++fi ++ ++as_me=`$as_basename -- "$0" || ++$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \ ++ X"$0" : 'X\(//\)$' \| \ ++ X"$0" : 'X\(/\)' \| . 2>/dev/null || ++$as_echo X/"$0" | ++ sed '/^.*\/\([^/][^/]*\)\/*$/{ ++ s//\1/ ++ q ++ } ++ /^X\/\(\/\/\)$/{ ++ s//\1/ ++ q ++ } ++ /^X\/\(\/\).*/{ ++ s//\1/ ++ q ++ } ++ s/.*/./; q'` ++ ++# Avoid depending upon Character Ranges. ++as_cr_letters='abcdefghijklmnopqrstuvwxyz' ++as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ' ++as_cr_Letters=$as_cr_letters$as_cr_LETTERS ++as_cr_digits='0123456789' ++as_cr_alnum=$as_cr_Letters$as_cr_digits ++ ++ ++ as_lineno_1=$LINENO as_lineno_1a=$LINENO ++ as_lineno_2=$LINENO as_lineno_2a=$LINENO ++ eval 'test "x$as_lineno_1'$as_run'" != "x$as_lineno_2'$as_run'" && ++ test "x`expr $as_lineno_1'$as_run' + 1`" = "x$as_lineno_2'$as_run'"' || { ++ # Blame Lee E. McMahon (1931-1989) for sed's syntax. :-) ++ sed -n ' ++ p ++ /[$]LINENO/= ++ ' <$as_myself | ++ sed ' ++ s/[$]LINENO.*/&-/ ++ t lineno ++ b ++ :lineno ++ N ++ :loop ++ s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/ ++ t loop ++ s/-\n.*// ++ ' >$as_me.lineno && ++ chmod +x "$as_me.lineno" || ++ { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2; as_fn_exit 1; } ++ ++ # Don't try to exec as it changes $[0], causing all sort of problems ++ # (the dirname of $[0] is not the place where we might find the ++ # original and so on. Autoconf is especially sensitive to this). ++ . "./$as_me.lineno" ++ # Exit status is that of the last command. ++ exit ++} ++ ++ECHO_C= ECHO_N= ECHO_T= ++case `echo -n x` in @%:@((((( ++-n*) ++ case `echo 'xy\c'` in ++ *c*) ECHO_T=' ';; # ECHO_T is single tab character. ++ xy) ECHO_C='\c';; ++ *) echo `echo ksh88 bug on AIX 6.1` > /dev/null ++ ECHO_T=' ';; ++ esac;; ++*) ++ ECHO_N='-n';; ++esac ++ ++rm -f conf$$ conf$$.exe conf$$.file ++if test -d conf$$.dir; then ++ rm -f conf$$.dir/conf$$.file ++else ++ rm -f conf$$.dir ++ mkdir conf$$.dir 2>/dev/null ++fi ++if (echo >conf$$.file) 2>/dev/null; then ++ if ln -s conf$$.file conf$$ 2>/dev/null; then ++ as_ln_s='ln -s' ++ # ... but there are two gotchas: ++ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail. ++ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable. ++ # In both cases, we have to default to `cp -p'. ++ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe || ++ as_ln_s='cp -p' ++ elif ln conf$$.file conf$$ 2>/dev/null; then ++ as_ln_s=ln ++ else ++ as_ln_s='cp -p' ++ fi ++else ++ as_ln_s='cp -p' ++fi ++rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file ++rmdir conf$$.dir 2>/dev/null ++ ++if mkdir -p . 2>/dev/null; then ++ as_mkdir_p='mkdir -p "$as_dir"' ++else ++ test -d ./-p && rmdir ./-p ++ as_mkdir_p=false ++fi ++ ++if test -x / >/dev/null 2>&1; then ++ as_test_x='test -x' ++else ++ if ls -dL / >/dev/null 2>&1; then ++ as_ls_L_option=L ++ else ++ as_ls_L_option= ++ fi ++ as_test_x=' ++ eval sh -c '\'' ++ if test -d "$1"; then ++ test -d "$1/."; ++ else ++ case $1 in @%:@( ++ -*)set "./$1";; ++ esac; ++ case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in @%:@(( ++ ???[sx]*):;;*)false;;esac;fi ++ '\'' sh ++ ' ++fi ++as_executable_p=$as_test_x ++ ++# Sed expression to map a string onto a valid CPP name. ++as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'" ++ ++# Sed expression to map a string onto a valid variable name. ++as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'" ++ ++ ++ ++# Check that we are running under the correct shell. ++SHELL=${CONFIG_SHELL-/bin/sh} ++ ++case X$lt_ECHO in ++X*--fallback-echo) ++ # Remove one level of quotation (which was required for Make). ++ ECHO=`echo "$lt_ECHO" | sed 's,\\\\\$\\$0,'$0','` ++ ;; ++esac ++ ++ECHO=${lt_ECHO-echo} ++if test "X$1" = X--no-reexec; then ++ # Discard the --no-reexec flag, and continue. ++ shift ++elif test "X$1" = X--fallback-echo; then ++ # Avoid inline document here, it may be left over ++ : ++elif test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' ; then ++ # Yippee, $ECHO works! ++ : ++else ++ # Restart under the correct shell. ++ exec $SHELL "$0" --no-reexec ${1+"$@"} ++fi ++ ++if test "X$1" = X--fallback-echo; then ++ # used as fallback echo ++ shift ++ cat <<_LT_EOF ++$* ++_LT_EOF ++ exit 0 ++fi ++ ++# The HP-UX ksh and POSIX shell print the target directory to stdout ++# if CDPATH is set. ++(unset CDPATH) >/dev/null 2>&1 && unset CDPATH ++ ++if test -z "$lt_ECHO"; then ++ if test "X${echo_test_string+set}" != Xset; then ++ # find a string as large as possible, as long as the shell can cope with it ++ for cmd in 'sed 50q "$0"' 'sed 20q "$0"' 'sed 10q "$0"' 'sed 2q "$0"' 'echo test'; do ++ # expected sizes: less than 2Kb, 1Kb, 512 bytes, 16 bytes, ... ++ if { echo_test_string=`eval $cmd`; } 2>/dev/null && ++ { test "X$echo_test_string" = "X$echo_test_string"; } 2>/dev/null ++ then ++ break ++ fi ++ done ++ fi ++ ++ if test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' && ++ echo_testing_string=`{ $ECHO "$echo_test_string"; } 2>/dev/null` && ++ test "X$echo_testing_string" = "X$echo_test_string"; then ++ : ++ else ++ # The Solaris, AIX, and Digital Unix default echo programs unquote ++ # backslashes. This makes it impossible to quote backslashes using ++ # echo "$something" | sed 's/\\/\\\\/g' ++ # ++ # So, first we look for a working echo in the user's PATH. ++ ++ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR ++ for dir in $PATH /usr/ucb; do ++ IFS="$lt_save_ifs" ++ if (test -f $dir/echo || test -f $dir/echo$ac_exeext) && ++ test "X`($dir/echo '\t') 2>/dev/null`" = 'X\t' && ++ echo_testing_string=`($dir/echo "$echo_test_string") 2>/dev/null` && ++ test "X$echo_testing_string" = "X$echo_test_string"; then ++ ECHO="$dir/echo" ++ break ++ fi ++ done ++ IFS="$lt_save_ifs" ++ ++ if test "X$ECHO" = Xecho; then ++ # We didn't find a better echo, so look for alternatives. ++ if test "X`{ print -r '\t'; } 2>/dev/null`" = 'X\t' && ++ echo_testing_string=`{ print -r "$echo_test_string"; } 2>/dev/null` && ++ test "X$echo_testing_string" = "X$echo_test_string"; then ++ # This shell has a builtin print -r that does the trick. ++ ECHO='print -r' ++ elif { test -f /bin/ksh || test -f /bin/ksh$ac_exeext; } && ++ test "X$CONFIG_SHELL" != X/bin/ksh; then ++ # If we have ksh, try running configure again with it. ++ ORIGINAL_CONFIG_SHELL=${CONFIG_SHELL-/bin/sh} ++ export ORIGINAL_CONFIG_SHELL ++ CONFIG_SHELL=/bin/ksh ++ export CONFIG_SHELL ++ exec $CONFIG_SHELL "$0" --no-reexec ${1+"$@"} ++ else ++ # Try using printf. ++ ECHO='printf %s\n' ++ if test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' && ++ echo_testing_string=`{ $ECHO "$echo_test_string"; } 2>/dev/null` && ++ test "X$echo_testing_string" = "X$echo_test_string"; then ++ # Cool, printf works ++ : ++ elif echo_testing_string=`($ORIGINAL_CONFIG_SHELL "$0" --fallback-echo '\t') 2>/dev/null` && ++ test "X$echo_testing_string" = 'X\t' && ++ echo_testing_string=`($ORIGINAL_CONFIG_SHELL "$0" --fallback-echo "$echo_test_string") 2>/dev/null` && ++ test "X$echo_testing_string" = "X$echo_test_string"; then ++ CONFIG_SHELL=$ORIGINAL_CONFIG_SHELL ++ export CONFIG_SHELL ++ SHELL="$CONFIG_SHELL" ++ export SHELL ++ ECHO="$CONFIG_SHELL $0 --fallback-echo" ++ elif echo_testing_string=`($CONFIG_SHELL "$0" --fallback-echo '\t') 2>/dev/null` && ++ test "X$echo_testing_string" = 'X\t' && ++ echo_testing_string=`($CONFIG_SHELL "$0" --fallback-echo "$echo_test_string") 2>/dev/null` && ++ test "X$echo_testing_string" = "X$echo_test_string"; then ++ ECHO="$CONFIG_SHELL $0 --fallback-echo" ++ else ++ # maybe with a smaller string... ++ prev=: ++ ++ for cmd in 'echo test' 'sed 2q "$0"' 'sed 10q "$0"' 'sed 20q "$0"' 'sed 50q "$0"'; do ++ if { test "X$echo_test_string" = "X`eval $cmd`"; } 2>/dev/null ++ then ++ break ++ fi ++ prev="$cmd" ++ done ++ ++ if test "$prev" != 'sed 50q "$0"'; then ++ echo_test_string=`eval $prev` ++ export echo_test_string ++ exec ${ORIGINAL_CONFIG_SHELL-${CONFIG_SHELL-/bin/sh}} "$0" ${1+"$@"} ++ else ++ # Oops. We lost completely, so just stick with echo. ++ ECHO=echo ++ fi ++ fi ++ fi ++ fi ++ fi ++fi ++ ++# Copy echo and quote the copy suitably for passing to libtool from ++# the Makefile, instead of quoting the original, which is used later. ++lt_ECHO=$ECHO ++if test "X$lt_ECHO" = "X$CONFIG_SHELL $0 --fallback-echo"; then ++ lt_ECHO="$CONFIG_SHELL \\\$\$0 --fallback-echo" ++fi ++ ++ ++ ++ ++test -n "$DJDIR" || exec 7<&0 &1 ++ ++# Name of the host. ++# hostname on some systems (SVR3.2, Linux) returns a bogus exit status, ++# so uname gets run too. ++ac_hostname=`(hostname || uname -n) 2>/dev/null | sed 1q` ++ ++# ++# Initializations. ++# ++ac_default_prefix=/usr/local ++ac_clean_files= ++ac_config_libobj_dir=. ++LIB@&t@OBJS= ++cross_compiling=no ++subdirs= ++MFLAGS= ++MAKEFLAGS= ++ ++# Identity of this package. ++PACKAGE_NAME= ++PACKAGE_TARNAME= ++PACKAGE_VERSION= ++PACKAGE_STRING= ++PACKAGE_BUGREPORT= ++PACKAGE_URL= ++ ++ac_unique_file="ajax/core/ajmath.c" ++# Factoring default headers for most tests. ++ac_includes_default="\ ++#include ++#ifdef HAVE_SYS_TYPES_H ++# include ++#endif ++#ifdef HAVE_SYS_STAT_H ++# include ++#endif ++#ifdef STDC_HEADERS ++# include ++# include ++#else ++# ifdef HAVE_STDLIB_H ++# include ++# endif ++#endif ++#ifdef HAVE_STRING_H ++# if !defined STDC_HEADERS && defined HAVE_MEMORY_H ++# include ++# endif ++# include ++#endif ++#ifdef HAVE_STRINGS_H ++# include ++#endif ++#ifdef HAVE_INTTYPES_H ++# include ++#endif ++#ifdef HAVE_STDINT_H ++# include ++#endif ++#ifdef HAVE_UNISTD_H ++# include ++#endif" ++ ++ac_subst_vars='am__EXEEXT_FALSE ++am__EXEEXT_TRUE ++LTLIBOBJS ++LIB@&t@OBJS ++NEEDAJAX ++NEEDAJAX_FALSE ++NEEDAJAX_TRUE ++ISAIXIA64 ++ISSHARED_FALSE ++ISSHARED_TRUE ++ISAIXIA64_FALSE ++ISAIXIA64_TRUE ++ISCYGWIN ++ISCYGWIN_FALSE ++ISCYGWIN_TRUE ++DEVWARNINGS ++DEVWARNINGS_FALSE ++DEVWARNINGS_TRUE ++DEVWARN_CFLAGS ++ISGCC_FALSE ++ISGCC_TRUE ++PURIFY_FALSE ++PURIFY_TRUE ++WARNINGS ++WARNINGS_FALSE ++WARNINGS_TRUE ++WARN_CFLAGS ++ESYSTEMLIBS ++ESYSTEMLIBS_FALSE ++ESYSTEMLIBS_TRUE ++POSIX_MALLOC_THRESHOLD ++PCRE_POSIXLIB_VERSION ++PCRE_LIB_VERSION ++PCRE_VERSION ++PCRE_DATE ++PCRE_MINOR ++PCRE_MAJOR ++HAVE_STRERROR ++HAVE_MEMMOVE ++EHAVEANT ++EHAVEANT_FALSE ++EHAVEANT_TRUE ++ant_in_path ++javac_in_path ++POSTGRESQL_LDFLAGS ++POSTGRESQL_CFLAGS ++POSTGRESQL_VERSION ++PG_CONFIG ++MYSQL_LDFLAGS ++MYSQL_CFLAGS ++MYSQL_VERSION ++MYSQL_CONFIG ++PLPLOT_LIBS ++PLPLOT_CFLAGS ++JAVA_OK ++havejavac ++AMPDF_FALSE ++AMPDF_TRUE ++AMPNG_FALSE ++AMPNG_TRUE ++XLIB ++X_EXTRA_LIBS ++X_LIBS ++X_PRE_LIBS ++X_CFLAGS ++XMKMF ++AJAX_SYSTEM ++EMBOSS_TOP ++AJAX_FIXED_ROOT ++CPP ++OTOOL64 ++OTOOL ++LIPO ++NMEDIT ++DSYMUTIL ++lt_ECHO ++RANLIB ++AR ++OBJDUMP ++LN_S ++NM ++ac_ct_DUMPBIN ++DUMPBIN ++LD ++FGREP ++EGREP ++GREP ++SED ++am__fastdepCC_FALSE ++am__fastdepCC_TRUE ++CCDEPMODE ++AMDEPBACKSLASH ++AMDEP_FALSE ++AMDEP_TRUE ++am__quote ++am__include ++DEPDIR ++OBJEXT ++EXEEXT ++ac_ct_CC ++CPPFLAGS ++LDFLAGS ++CFLAGS ++CC ++host_os ++host_vendor ++host_cpu ++host ++build_os ++build_vendor ++build_cpu ++build ++LIBTOOL ++am__untar ++am__tar ++AMTAR ++am__leading_dot ++SET_MAKE ++AWK ++mkdir_p ++MKDIR_P ++INSTALL_STRIP_PROGRAM ++STRIP ++install_sh ++MAKEINFO ++AUTOHEADER ++AUTOMAKE ++AUTOCONF ++ACLOCAL ++VERSION ++PACKAGE ++CYGPATH_W ++am__isrc ++INSTALL_DATA ++INSTALL_SCRIPT ++INSTALL_PROGRAM ++target_alias ++host_alias ++build_alias ++LIBS ++ECHO_T ++ECHO_N ++ECHO_C ++DEFS ++mandir ++localedir ++libdir ++psdir ++pdfdir ++dvidir ++htmldir ++infodir ++docdir ++oldincludedir ++includedir ++localstatedir ++sharedstatedir ++sysconfdir ++datadir ++datarootdir ++libexecdir ++sbindir ++bindir ++program_transform_name ++prefix ++exec_prefix ++PACKAGE_URL ++PACKAGE_BUGREPORT ++PACKAGE_STRING ++PACKAGE_VERSION ++PACKAGE_TARNAME ++PACKAGE_NAME ++PATH_SEPARATOR ++SHELL' ++ac_subst_files='' ++ac_user_opts=' ++enable_option_checking ++enable_shared ++enable_static ++with_pic ++enable_fast_install ++enable_dependency_tracking ++with_gnu_ld ++enable_libtool_lock ++with_sgiabi ++enable_64 ++with_x ++with_docroot ++with_gccprofile ++with_java ++with_javaos ++with_hpdf ++with_pngdriver ++with_auth ++with_mysql ++with_postgresql ++enable_debug ++enable_large ++enable_systemlibs ++enable_purify ++enable_warnings ++enable_devwarnings ++enable_devextrawarnings ++enable_mprobe ++enable_savestats ++with_thread ++' ++ ac_precious_vars='build_alias ++host_alias ++target_alias ++CC ++CFLAGS ++LDFLAGS ++LIBS ++CPPFLAGS ++CPP ++XMKMF' ++ ++ ++# Initialize some variables set by options. ++ac_init_help= ++ac_init_version=false ++ac_unrecognized_opts= ++ac_unrecognized_sep= ++# The variables have the same names as the options, with ++# dashes changed to underlines. ++cache_file=/dev/null ++exec_prefix=NONE ++no_create= ++no_recursion= ++prefix=NONE ++program_prefix=NONE ++program_suffix=NONE ++program_transform_name=s,x,x, ++silent= ++site= ++srcdir= ++verbose= ++x_includes=NONE ++x_libraries=NONE ++ ++# Installation directory options. ++# These are left unexpanded so users can "make install exec_prefix=/foo" ++# and all the variables that are supposed to be based on exec_prefix ++# by default will actually change. ++# Use braces instead of parens because sh, perl, etc. also accept them. ++# (The list follows the same order as the GNU Coding Standards.) ++bindir='${exec_prefix}/bin' ++sbindir='${exec_prefix}/sbin' ++libexecdir='${exec_prefix}/libexec' ++datarootdir='${prefix}/share' ++datadir='${datarootdir}' ++sysconfdir='${prefix}/etc' ++sharedstatedir='${prefix}/com' ++localstatedir='${prefix}/var' ++includedir='${prefix}/include' ++oldincludedir='/usr/include' ++docdir='${datarootdir}/doc/${PACKAGE}' ++infodir='${datarootdir}/info' ++htmldir='${docdir}' ++dvidir='${docdir}' ++pdfdir='${docdir}' ++psdir='${docdir}' ++libdir='${exec_prefix}/lib' ++localedir='${datarootdir}/locale' ++mandir='${datarootdir}/man' ++ ++ac_prev= ++ac_dashdash= ++for ac_option ++do ++ # If the previous option needs an argument, assign it. ++ if test -n "$ac_prev"; then ++ eval $ac_prev=\$ac_option ++ ac_prev= ++ continue ++ fi ++ ++ case $ac_option in ++ *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;; ++ *) ac_optarg=yes ;; ++ esac ++ ++ # Accept the important Cygnus configure options, so we can diagnose typos. ++ ++ case $ac_dashdash$ac_option in ++ --) ++ ac_dashdash=yes ;; ++ ++ -bindir | --bindir | --bindi | --bind | --bin | --bi) ++ ac_prev=bindir ;; ++ -bindir=* | --bindir=* | --bindi=* | --bind=* | --bin=* | --bi=*) ++ bindir=$ac_optarg ;; ++ ++ -build | --build | --buil | --bui | --bu) ++ ac_prev=build_alias ;; ++ -build=* | --build=* | --buil=* | --bui=* | --bu=*) ++ build_alias=$ac_optarg ;; ++ ++ -cache-file | --cache-file | --cache-fil | --cache-fi \ ++ | --cache-f | --cache- | --cache | --cach | --cac | --ca | --c) ++ ac_prev=cache_file ;; ++ -cache-file=* | --cache-file=* | --cache-fil=* | --cache-fi=* \ ++ | --cache-f=* | --cache-=* | --cache=* | --cach=* | --cac=* | --ca=* | --c=*) ++ cache_file=$ac_optarg ;; ++ ++ --config-cache | -C) ++ cache_file=config.cache ;; ++ ++ -datadir | --datadir | --datadi | --datad) ++ ac_prev=datadir ;; ++ -datadir=* | --datadir=* | --datadi=* | --datad=*) ++ datadir=$ac_optarg ;; ++ ++ -datarootdir | --datarootdir | --datarootdi | --datarootd | --dataroot \ ++ | --dataroo | --dataro | --datar) ++ ac_prev=datarootdir ;; ++ -datarootdir=* | --datarootdir=* | --datarootdi=* | --datarootd=* \ ++ | --dataroot=* | --dataroo=* | --dataro=* | --datar=*) ++ datarootdir=$ac_optarg ;; ++ ++ -disable-* | --disable-*) ++ ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'` ++ # Reject names that are not valid shell variable names. ++ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null && ++ as_fn_error "invalid feature name: $ac_useropt" ++ ac_useropt_orig=$ac_useropt ++ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'` ++ case $ac_user_opts in ++ *" ++"enable_$ac_useropt" ++"*) ;; ++ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--disable-$ac_useropt_orig" ++ ac_unrecognized_sep=', ';; ++ esac ++ eval enable_$ac_useropt=no ;; ++ ++ -docdir | --docdir | --docdi | --doc | --do) ++ ac_prev=docdir ;; ++ -docdir=* | --docdir=* | --docdi=* | --doc=* | --do=*) ++ docdir=$ac_optarg ;; ++ ++ -dvidir | --dvidir | --dvidi | --dvid | --dvi | --dv) ++ ac_prev=dvidir ;; ++ -dvidir=* | --dvidir=* | --dvidi=* | --dvid=* | --dvi=* | --dv=*) ++ dvidir=$ac_optarg ;; ++ ++ -enable-* | --enable-*) ++ ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'` ++ # Reject names that are not valid shell variable names. ++ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null && ++ as_fn_error "invalid feature name: $ac_useropt" ++ ac_useropt_orig=$ac_useropt ++ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'` ++ case $ac_user_opts in ++ *" ++"enable_$ac_useropt" ++"*) ;; ++ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--enable-$ac_useropt_orig" ++ ac_unrecognized_sep=', ';; ++ esac ++ eval enable_$ac_useropt=\$ac_optarg ;; ++ ++ -exec-prefix | --exec_prefix | --exec-prefix | --exec-prefi \ ++ | --exec-pref | --exec-pre | --exec-pr | --exec-p | --exec- \ ++ | --exec | --exe | --ex) ++ ac_prev=exec_prefix ;; ++ -exec-prefix=* | --exec_prefix=* | --exec-prefix=* | --exec-prefi=* \ ++ | --exec-pref=* | --exec-pre=* | --exec-pr=* | --exec-p=* | --exec-=* \ ++ | --exec=* | --exe=* | --ex=*) ++ exec_prefix=$ac_optarg ;; ++ ++ -gas | --gas | --ga | --g) ++ # Obsolete; use --with-gas. ++ with_gas=yes ;; ++ ++ -help | --help | --hel | --he | -h) ++ ac_init_help=long ;; ++ -help=r* | --help=r* | --hel=r* | --he=r* | -hr*) ++ ac_init_help=recursive ;; ++ -help=s* | --help=s* | --hel=s* | --he=s* | -hs*) ++ ac_init_help=short ;; ++ ++ -host | --host | --hos | --ho) ++ ac_prev=host_alias ;; ++ -host=* | --host=* | --hos=* | --ho=*) ++ host_alias=$ac_optarg ;; ++ ++ -htmldir | --htmldir | --htmldi | --htmld | --html | --htm | --ht) ++ ac_prev=htmldir ;; ++ -htmldir=* | --htmldir=* | --htmldi=* | --htmld=* | --html=* | --htm=* \ ++ | --ht=*) ++ htmldir=$ac_optarg ;; ++ ++ -includedir | --includedir | --includedi | --included | --include \ ++ | --includ | --inclu | --incl | --inc) ++ ac_prev=includedir ;; ++ -includedir=* | --includedir=* | --includedi=* | --included=* | --include=* \ ++ | --includ=* | --inclu=* | --incl=* | --inc=*) ++ includedir=$ac_optarg ;; ++ ++ -infodir | --infodir | --infodi | --infod | --info | --inf) ++ ac_prev=infodir ;; ++ -infodir=* | --infodir=* | --infodi=* | --infod=* | --info=* | --inf=*) ++ infodir=$ac_optarg ;; ++ ++ -libdir | --libdir | --libdi | --libd) ++ ac_prev=libdir ;; ++ -libdir=* | --libdir=* | --libdi=* | --libd=*) ++ libdir=$ac_optarg ;; ++ ++ -libexecdir | --libexecdir | --libexecdi | --libexecd | --libexec \ ++ | --libexe | --libex | --libe) ++ ac_prev=libexecdir ;; ++ -libexecdir=* | --libexecdir=* | --libexecdi=* | --libexecd=* | --libexec=* \ ++ | --libexe=* | --libex=* | --libe=*) ++ libexecdir=$ac_optarg ;; ++ ++ -localedir | --localedir | --localedi | --localed | --locale) ++ ac_prev=localedir ;; ++ -localedir=* | --localedir=* | --localedi=* | --localed=* | --locale=*) ++ localedir=$ac_optarg ;; ++ ++ -localstatedir | --localstatedir | --localstatedi | --localstated \ ++ | --localstate | --localstat | --localsta | --localst | --locals) ++ ac_prev=localstatedir ;; ++ -localstatedir=* | --localstatedir=* | --localstatedi=* | --localstated=* \ ++ | --localstate=* | --localstat=* | --localsta=* | --localst=* | --locals=*) ++ localstatedir=$ac_optarg ;; ++ ++ -mandir | --mandir | --mandi | --mand | --man | --ma | --m) ++ ac_prev=mandir ;; ++ -mandir=* | --mandir=* | --mandi=* | --mand=* | --man=* | --ma=* | --m=*) ++ mandir=$ac_optarg ;; ++ ++ -nfp | --nfp | --nf) ++ # Obsolete; use --without-fp. ++ with_fp=no ;; ++ ++ -no-create | --no-create | --no-creat | --no-crea | --no-cre \ ++ | --no-cr | --no-c | -n) ++ no_create=yes ;; ++ ++ -no-recursion | --no-recursion | --no-recursio | --no-recursi \ ++ | --no-recurs | --no-recur | --no-recu | --no-rec | --no-re | --no-r) ++ no_recursion=yes ;; ++ ++ -oldincludedir | --oldincludedir | --oldincludedi | --oldincluded \ ++ | --oldinclude | --oldinclud | --oldinclu | --oldincl | --oldinc \ ++ | --oldin | --oldi | --old | --ol | --o) ++ ac_prev=oldincludedir ;; ++ -oldincludedir=* | --oldincludedir=* | --oldincludedi=* | --oldincluded=* \ ++ | --oldinclude=* | --oldinclud=* | --oldinclu=* | --oldincl=* | --oldinc=* \ ++ | --oldin=* | --oldi=* | --old=* | --ol=* | --o=*) ++ oldincludedir=$ac_optarg ;; ++ ++ -prefix | --prefix | --prefi | --pref | --pre | --pr | --p) ++ ac_prev=prefix ;; ++ -prefix=* | --prefix=* | --prefi=* | --pref=* | --pre=* | --pr=* | --p=*) ++ prefix=$ac_optarg ;; ++ ++ -program-prefix | --program-prefix | --program-prefi | --program-pref \ ++ | --program-pre | --program-pr | --program-p) ++ ac_prev=program_prefix ;; ++ -program-prefix=* | --program-prefix=* | --program-prefi=* \ ++ | --program-pref=* | --program-pre=* | --program-pr=* | --program-p=*) ++ program_prefix=$ac_optarg ;; ++ ++ -program-suffix | --program-suffix | --program-suffi | --program-suff \ ++ | --program-suf | --program-su | --program-s) ++ ac_prev=program_suffix ;; ++ -program-suffix=* | --program-suffix=* | --program-suffi=* \ ++ | --program-suff=* | --program-suf=* | --program-su=* | --program-s=*) ++ program_suffix=$ac_optarg ;; ++ ++ -program-transform-name | --program-transform-name \ ++ | --program-transform-nam | --program-transform-na \ ++ | --program-transform-n | --program-transform- \ ++ | --program-transform | --program-transfor \ ++ | --program-transfo | --program-transf \ ++ | --program-trans | --program-tran \ ++ | --progr-tra | --program-tr | --program-t) ++ ac_prev=program_transform_name ;; ++ -program-transform-name=* | --program-transform-name=* \ ++ | --program-transform-nam=* | --program-transform-na=* \ ++ | --program-transform-n=* | --program-transform-=* \ ++ | --program-transform=* | --program-transfor=* \ ++ | --program-transfo=* | --program-transf=* \ ++ | --program-trans=* | --program-tran=* \ ++ | --progr-tra=* | --program-tr=* | --program-t=*) ++ program_transform_name=$ac_optarg ;; ++ ++ -pdfdir | --pdfdir | --pdfdi | --pdfd | --pdf | --pd) ++ ac_prev=pdfdir ;; ++ -pdfdir=* | --pdfdir=* | --pdfdi=* | --pdfd=* | --pdf=* | --pd=*) ++ pdfdir=$ac_optarg ;; ++ ++ -psdir | --psdir | --psdi | --psd | --ps) ++ ac_prev=psdir ;; ++ -psdir=* | --psdir=* | --psdi=* | --psd=* | --ps=*) ++ psdir=$ac_optarg ;; ++ ++ -q | -quiet | --quiet | --quie | --qui | --qu | --q \ ++ | -silent | --silent | --silen | --sile | --sil) ++ silent=yes ;; ++ ++ -sbindir | --sbindir | --sbindi | --sbind | --sbin | --sbi | --sb) ++ ac_prev=sbindir ;; ++ -sbindir=* | --sbindir=* | --sbindi=* | --sbind=* | --sbin=* \ ++ | --sbi=* | --sb=*) ++ sbindir=$ac_optarg ;; ++ ++ -sharedstatedir | --sharedstatedir | --sharedstatedi \ ++ | --sharedstated | --sharedstate | --sharedstat | --sharedsta \ ++ | --sharedst | --shareds | --shared | --share | --shar \ ++ | --sha | --sh) ++ ac_prev=sharedstatedir ;; ++ -sharedstatedir=* | --sharedstatedir=* | --sharedstatedi=* \ ++ | --sharedstated=* | --sharedstate=* | --sharedstat=* | --sharedsta=* \ ++ | --sharedst=* | --shareds=* | --shared=* | --share=* | --shar=* \ ++ | --sha=* | --sh=*) ++ sharedstatedir=$ac_optarg ;; ++ ++ -site | --site | --sit) ++ ac_prev=site ;; ++ -site=* | --site=* | --sit=*) ++ site=$ac_optarg ;; ++ ++ -srcdir | --srcdir | --srcdi | --srcd | --src | --sr) ++ ac_prev=srcdir ;; ++ -srcdir=* | --srcdir=* | --srcdi=* | --srcd=* | --src=* | --sr=*) ++ srcdir=$ac_optarg ;; ++ ++ -sysconfdir | --sysconfdir | --sysconfdi | --sysconfd | --sysconf \ ++ | --syscon | --sysco | --sysc | --sys | --sy) ++ ac_prev=sysconfdir ;; ++ -sysconfdir=* | --sysconfdir=* | --sysconfdi=* | --sysconfd=* | --sysconf=* \ ++ | --syscon=* | --sysco=* | --sysc=* | --sys=* | --sy=*) ++ sysconfdir=$ac_optarg ;; ++ ++ -target | --target | --targe | --targ | --tar | --ta | --t) ++ ac_prev=target_alias ;; ++ -target=* | --target=* | --targe=* | --targ=* | --tar=* | --ta=* | --t=*) ++ target_alias=$ac_optarg ;; ++ ++ -v | -verbose | --verbose | --verbos | --verbo | --verb) ++ verbose=yes ;; ++ ++ -version | --version | --versio | --versi | --vers | -V) ++ ac_init_version=: ;; ++ ++ -with-* | --with-*) ++ ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'` ++ # Reject names that are not valid shell variable names. ++ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null && ++ as_fn_error "invalid package name: $ac_useropt" ++ ac_useropt_orig=$ac_useropt ++ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'` ++ case $ac_user_opts in ++ *" ++"with_$ac_useropt" ++"*) ;; ++ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--with-$ac_useropt_orig" ++ ac_unrecognized_sep=', ';; ++ esac ++ eval with_$ac_useropt=\$ac_optarg ;; ++ ++ -without-* | --without-*) ++ ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'` ++ # Reject names that are not valid shell variable names. ++ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null && ++ as_fn_error "invalid package name: $ac_useropt" ++ ac_useropt_orig=$ac_useropt ++ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'` ++ case $ac_user_opts in ++ *" ++"with_$ac_useropt" ++"*) ;; ++ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--without-$ac_useropt_orig" ++ ac_unrecognized_sep=', ';; ++ esac ++ eval with_$ac_useropt=no ;; ++ ++ --x) ++ # Obsolete; use --with-x. ++ with_x=yes ;; ++ ++ -x-includes | --x-includes | --x-include | --x-includ | --x-inclu \ ++ | --x-incl | --x-inc | --x-in | --x-i) ++ ac_prev=x_includes ;; ++ -x-includes=* | --x-includes=* | --x-include=* | --x-includ=* | --x-inclu=* \ ++ | --x-incl=* | --x-inc=* | --x-in=* | --x-i=*) ++ x_includes=$ac_optarg ;; ++ ++ -x-libraries | --x-libraries | --x-librarie | --x-librari \ ++ | --x-librar | --x-libra | --x-libr | --x-lib | --x-li | --x-l) ++ ac_prev=x_libraries ;; ++ -x-libraries=* | --x-libraries=* | --x-librarie=* | --x-librari=* \ ++ | --x-librar=* | --x-libra=* | --x-libr=* | --x-lib=* | --x-li=* | --x-l=*) ++ x_libraries=$ac_optarg ;; ++ ++ -*) as_fn_error "unrecognized option: \`$ac_option' ++Try \`$0 --help' for more information." ++ ;; ++ ++ *=*) ++ ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='` ++ # Reject names that are not valid shell variable names. ++ case $ac_envvar in #( ++ '' | [0-9]* | *[!_$as_cr_alnum]* ) ++ as_fn_error "invalid variable name: \`$ac_envvar'" ;; ++ esac ++ eval $ac_envvar=\$ac_optarg ++ export $ac_envvar ;; ++ ++ *) ++ # FIXME: should be removed in autoconf 3.0. ++ $as_echo "$as_me: WARNING: you should use --build, --host, --target" >&2 ++ expr "x$ac_option" : ".*[^-._$as_cr_alnum]" >/dev/null && ++ $as_echo "$as_me: WARNING: invalid host type: $ac_option" >&2 ++ : ${build_alias=$ac_option} ${host_alias=$ac_option} ${target_alias=$ac_option} ++ ;; ++ ++ esac ++done ++ ++if test -n "$ac_prev"; then ++ ac_option=--`echo $ac_prev | sed 's/_/-/g'` ++ as_fn_error "missing argument to $ac_option" ++fi ++ ++if test -n "$ac_unrecognized_opts"; then ++ case $enable_option_checking in ++ no) ;; ++ fatal) as_fn_error "unrecognized options: $ac_unrecognized_opts" ;; ++ *) $as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2 ;; ++ esac ++fi ++ ++# Check all directory arguments for consistency. ++for ac_var in exec_prefix prefix bindir sbindir libexecdir datarootdir \ ++ datadir sysconfdir sharedstatedir localstatedir includedir \ ++ oldincludedir docdir infodir htmldir dvidir pdfdir psdir \ ++ libdir localedir mandir ++do ++ eval ac_val=\$$ac_var ++ # Remove trailing slashes. ++ case $ac_val in ++ */ ) ++ ac_val=`expr "X$ac_val" : 'X\(.*[^/]\)' \| "X$ac_val" : 'X\(.*\)'` ++ eval $ac_var=\$ac_val;; ++ esac ++ # Be sure to have absolute directory names. ++ case $ac_val in ++ [\\/$]* | ?:[\\/]* ) continue;; ++ NONE | '' ) case $ac_var in *prefix ) continue;; esac;; ++ esac ++ as_fn_error "expected an absolute directory name for --$ac_var: $ac_val" ++done ++ ++# There might be people who depend on the old broken behavior: `$host' ++# used to hold the argument of --host etc. ++# FIXME: To remove some day. ++build=$build_alias ++host=$host_alias ++target=$target_alias ++ ++# FIXME: To remove some day. ++if test "x$host_alias" != x; then ++ if test "x$build_alias" = x; then ++ cross_compiling=maybe ++ $as_echo "$as_me: WARNING: If you wanted to set the --build type, don't use --host. ++ If a cross compiler is detected then cross compile mode will be used." >&2 ++ elif test "x$build_alias" != "x$host_alias"; then ++ cross_compiling=yes ++ fi ++fi ++ ++ac_tool_prefix= ++test -n "$host_alias" && ac_tool_prefix=$host_alias- ++ ++test "$silent" = yes && exec 6>/dev/null ++ ++ ++ac_pwd=`pwd` && test -n "$ac_pwd" && ++ac_ls_di=`ls -di .` && ++ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` || ++ as_fn_error "working directory cannot be determined" ++test "X$ac_ls_di" = "X$ac_pwd_ls_di" || ++ as_fn_error "pwd does not report name of working directory" ++ ++ ++# Find the source files, if location was not specified. ++if test -z "$srcdir"; then ++ ac_srcdir_defaulted=yes ++ # Try the directory containing this script, then the parent directory. ++ ac_confdir=`$as_dirname -- "$as_myself" || ++$as_expr X"$as_myself" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ ++ X"$as_myself" : 'X\(//\)[^/]' \| \ ++ X"$as_myself" : 'X\(//\)$' \| \ ++ X"$as_myself" : 'X\(/\)' \| . 2>/dev/null || ++$as_echo X"$as_myself" | ++ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ ++ s//\1/ ++ q ++ } ++ /^X\(\/\/\)[^/].*/{ ++ s//\1/ ++ q ++ } ++ /^X\(\/\/\)$/{ ++ s//\1/ ++ q ++ } ++ /^X\(\/\).*/{ ++ s//\1/ ++ q ++ } ++ s/.*/./; q'` ++ srcdir=$ac_confdir ++ if test ! -r "$srcdir/$ac_unique_file"; then ++ srcdir=.. ++ fi ++else ++ ac_srcdir_defaulted=no ++fi ++if test ! -r "$srcdir/$ac_unique_file"; then ++ test "$ac_srcdir_defaulted" = yes && srcdir="$ac_confdir or .." ++ as_fn_error "cannot find sources ($ac_unique_file) in $srcdir" ++fi ++ac_msg="sources are in $srcdir, but \`cd $srcdir' does not work" ++ac_abs_confdir=`( ++ cd "$srcdir" && test -r "./$ac_unique_file" || as_fn_error "$ac_msg" ++ pwd)` ++# When building in place, set srcdir=. ++if test "$ac_abs_confdir" = "$ac_pwd"; then ++ srcdir=. ++fi ++# Remove unnecessary trailing slashes from srcdir. ++# Double slashes in file names in object file debugging info ++# mess up M-x gdb in Emacs. ++case $srcdir in ++*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;; ++esac ++for ac_var in $ac_precious_vars; do ++ eval ac_env_${ac_var}_set=\${${ac_var}+set} ++ eval ac_env_${ac_var}_value=\$${ac_var} ++ eval ac_cv_env_${ac_var}_set=\${${ac_var}+set} ++ eval ac_cv_env_${ac_var}_value=\$${ac_var} ++done ++ ++# ++# Report the --help message. ++# ++if test "$ac_init_help" = "long"; then ++ # Omit some internal or obsolete options to make the list less imposing. ++ # This message is too long to be a string in the A/UX 3.1 sh. ++ cat <<_ACEOF ++\`configure' configures this package to adapt to many kinds of systems. ++ ++Usage: $0 [OPTION]... [VAR=VALUE]... ++ ++To assign environment variables (e.g., CC, CFLAGS...), specify them as ++VAR=VALUE. See below for descriptions of some of the useful variables. ++ ++Defaults for the options are specified in brackets. ++ ++Configuration: ++ -h, --help display this help and exit ++ --help=short display options specific to this package ++ --help=recursive display the short help of all the included packages ++ -V, --version display version information and exit ++ -q, --quiet, --silent do not print \`checking...' messages ++ --cache-file=FILE cache test results in FILE [disabled] ++ -C, --config-cache alias for \`--cache-file=config.cache' ++ -n, --no-create do not create output files ++ --srcdir=DIR find the sources in DIR [configure dir or \`..'] ++ ++Installation directories: ++ --prefix=PREFIX install architecture-independent files in PREFIX ++ @<:@@S|@ac_default_prefix@:>@ ++ --exec-prefix=EPREFIX install architecture-dependent files in EPREFIX ++ @<:@PREFIX@:>@ ++ ++By default, \`make install' will install all the files in ++\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify ++an installation prefix other than \`$ac_default_prefix' using \`--prefix', ++for instance \`--prefix=\$HOME'. ++ ++For better control, use the options below. ++ ++Fine tuning of the installation directories: ++ --bindir=DIR user executables [EPREFIX/bin] ++ --sbindir=DIR system admin executables [EPREFIX/sbin] ++ --libexecdir=DIR program executables [EPREFIX/libexec] ++ --sysconfdir=DIR read-only single-machine data [PREFIX/etc] ++ --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com] ++ --localstatedir=DIR modifiable single-machine data [PREFIX/var] ++ --libdir=DIR object code libraries [EPREFIX/lib] ++ --includedir=DIR C header files [PREFIX/include] ++ --oldincludedir=DIR C header files for non-gcc [/usr/include] ++ --datarootdir=DIR read-only arch.-independent data root [PREFIX/share] ++ --datadir=DIR read-only architecture-independent data [DATAROOTDIR] ++ --infodir=DIR info documentation [DATAROOTDIR/info] ++ --localedir=DIR locale-dependent data [DATAROOTDIR/locale] ++ --mandir=DIR man documentation [DATAROOTDIR/man] ++ --docdir=DIR documentation root @<:@DATAROOTDIR/doc/PACKAGE@:>@ ++ --htmldir=DIR html documentation [DOCDIR] ++ --dvidir=DIR dvi documentation [DOCDIR] ++ --pdfdir=DIR pdf documentation [DOCDIR] ++ --psdir=DIR ps documentation [DOCDIR] ++_ACEOF ++ ++ cat <<\_ACEOF ++ ++Program names: ++ --program-prefix=PREFIX prepend PREFIX to installed program names ++ --program-suffix=SUFFIX append SUFFIX to installed program names ++ --program-transform-name=PROGRAM run sed PROGRAM on installed program names ++ ++X features: ++ --x-includes=DIR X include files are in DIR ++ --x-libraries=DIR X library files are in DIR ++ ++System types: ++ --build=BUILD configure for building on BUILD [guessed] ++ --host=HOST cross-compile to build programs to run on HOST [BUILD] ++_ACEOF ++fi ++ ++if test -n "$ac_init_help"; then ++ ++ cat <<\_ACEOF ++ ++Optional Features: ++ --disable-option-checking ignore unrecognized --enable/--with options ++ --disable-FEATURE do not include FEATURE (same as --enable-FEATURE=no) ++ --enable-FEATURE[=ARG] include FEATURE [ARG=yes] ++ --enable-shared@<:@=PKGS@:>@ build shared libraries @<:@default=yes@:>@ ++ --enable-static@<:@=PKGS@:>@ build static libraries @<:@default=yes@:>@ ++ --enable-fast-install@<:@=PKGS@:>@ ++ optimize for fast installation @<:@default=yes@:>@ ++ --disable-dependency-tracking speeds up one-time build ++ --enable-dependency-tracking do not reject slow dependency extractors ++ --disable-libtool-lock avoid locking (might break parallel builds) ++ --enable-64 64 bit pointers ++ --enable-debug debug (-g option on compiler) ++ --enable-large over 2Gb file support (default) ++ --enable-systemlibs utility for RPM/dpkg bundles ++ --enable-purify purify ++ --enable-warnings warnings (-Wall option on gcc compiler) ++ --enable-devwarnings strict warnings (gcc compiler only) for developers ++ --enable-devextrawarnings ++ add extra warnings to devwarnings ++ --enable-mprobe mprobe memory allocation test ++ --enable-savestats save statistics and print with debug output ++ ++Optional Packages: ++ --with-PACKAGE[=ARG] use PACKAGE [ARG=yes] ++ --without-PACKAGE do not use PACKAGE (same as --with-PACKAGE=no) ++ --with-pic try to use only PIC/non-PIC objects @<:@default=use ++ both@:>@ ++ --with-gnu-ld assume the C compiler uses GNU ld @<:@default=no@:>@ ++ --with-sgiabi=@<:@ARG@:>@ SGI compiler flags @<:@default=no@:>@ ++ --with-x use the X Window System ++ --with-docroot=DIR root directory path of documentation (defaults to ++ none) ++ --with-gccprofile selects profiling ++ --with-java=DIR root directory path of java installation ++ --without-java to disable java ++ --with-javaos=DIR root directory path of java installation include OS ++ --with-hpdf=DIR root directory path of hpdf installation @<:@defaults ++ to /usr@:>@ ++ --without-hpdf to disable pdf support ++ --with-pngdriver=@<:@DIR@:>@ root directory path of png/gd/zlib installation ++ (defaults to /usr) ++ --without-pngdriver to disable pngdriver usage completely ++ --with-auth=@<:@AUTHTYPE@:>@ defaults to PAM ++ --with-mysql=@<:@ARG@:>@ use MySQL client library @<:@default=yes@:>@, optionally ++ specify path to mysql_config ++ --with-postgresql=@<:@ARG@:>@ use PostgreSQL library @<:@default=yes@:>@, optionally ++ specify path to pg_config ++ --with-thread=@<:@TYPE@:>@ thread type @<:@default=linux@:>@ ++ ++Some influential environment variables: ++ CC C compiler command ++ CFLAGS C compiler flags ++ LDFLAGS linker flags, e.g. -L if you have libraries in a ++ nonstandard directory ++ LIBS libraries to pass to the linker, e.g. -l ++ CPPFLAGS (Objective) C/C++ preprocessor flags, e.g. -I if ++ you have headers in a nonstandard directory ++ CPP C preprocessor ++ XMKMF Path to xmkmf, Makefile generator for X Window System ++ ++Use these variables to override the choices made by `configure' or to help ++it to find libraries and programs with nonstandard names/locations. ++ ++Report bugs to the package provider. ++_ACEOF ++ac_status=$? ++fi ++ ++if test "$ac_init_help" = "recursive"; then ++ # If there are subdirs, report their specific --help. ++ for ac_dir in : $ac_subdirs_all; do test "x$ac_dir" = x: && continue ++ test -d "$ac_dir" || ++ { cd "$srcdir" && ac_pwd=`pwd` && srcdir=. && test -d "$ac_dir"; } || ++ continue ++ ac_builddir=. ++ ++case "$ac_dir" in ++.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;; ++*) ++ ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'` ++ # A ".." for each directory in $ac_dir_suffix. ++ ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'` ++ case $ac_top_builddir_sub in ++ "") ac_top_builddir_sub=. ac_top_build_prefix= ;; ++ *) ac_top_build_prefix=$ac_top_builddir_sub/ ;; ++ esac ;; ++esac ++ac_abs_top_builddir=$ac_pwd ++ac_abs_builddir=$ac_pwd$ac_dir_suffix ++# for backward compatibility: ++ac_top_builddir=$ac_top_build_prefix ++ ++case $srcdir in ++ .) # We are building in place. ++ ac_srcdir=. ++ ac_top_srcdir=$ac_top_builddir_sub ++ ac_abs_top_srcdir=$ac_pwd ;; ++ [\\/]* | ?:[\\/]* ) # Absolute name. ++ ac_srcdir=$srcdir$ac_dir_suffix; 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" >&6; } ++if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_STRIP"; then ++ ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_STRIP="strip" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP ++if test -n "$ac_ct_STRIP"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_STRIP" >&5 ++$as_echo "$ac_ct_STRIP" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_STRIP" = x; then ++ STRIP=":" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ STRIP=$ac_ct_STRIP ++ fi ++else ++ STRIP="$ac_cv_prog_STRIP" ++fi ++ ++fi ++INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s" ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for a thread-safe mkdir -p" >&5 ++$as_echo_n "checking for a thread-safe mkdir -p... " >&6; } ++if test -z "$MKDIR_P"; then ++ if test "${ac_cv_path_mkdir+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH$PATH_SEPARATOR/opt/sfw/bin ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_prog in mkdir gmkdir; do ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue ++ case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #( ++ 'mkdir (GNU coreutils) '* | \ ++ 'mkdir (coreutils) '* | \ ++ 'mkdir (fileutils) '4.1*) ++ ac_cv_path_mkdir=$as_dir/$ac_prog$ac_exec_ext ++ break 3;; ++ esac ++ done ++ done ++ done ++IFS=$as_save_IFS ++ ++fi ++ ++ test -d ./--version && rmdir ./--version ++ if test "${ac_cv_path_mkdir+set}" = set; then ++ MKDIR_P="$ac_cv_path_mkdir -p" ++ else ++ # As a last resort, use the slow shell script. Don't cache a ++ # value for MKDIR_P within a source directory, because that will ++ # break other packages using the cache if that directory is ++ # removed, or if the value is a relative name. ++ MKDIR_P="$ac_install_sh -d" ++ fi ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $MKDIR_P" >&5 ++$as_echo "$MKDIR_P" >&6; } ++ ++mkdir_p="$MKDIR_P" ++case $mkdir_p in ++ [\\/$]* | ?:[\\/]*) ;; ++ */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;; ++esac ++ ++for ac_prog in gawk mawk nawk awk ++do ++ # Extract the first word of "$ac_prog", so it can be a program name with args. ++set dummy $ac_prog; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_AWK+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$AWK"; then ++ ac_cv_prog_AWK="$AWK" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_AWK="$ac_prog" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++AWK=$ac_cv_prog_AWK ++if test -n "$AWK"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $AWK" >&5 ++$as_echo "$AWK" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ test -n "$AWK" && break ++done ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether ${MAKE-make} sets \$(MAKE)" >&5 ++$as_echo_n "checking whether ${MAKE-make} sets \$(MAKE)... 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The system "awk" is bad on ++# some platforms. ++# Always define AMTAR for backward compatibility. ++ ++AMTAR=${AMTAR-"${am_missing_run}tar"} ++ ++am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -' ++ ++ ++ ++ ++ ++ ++# Make sure CFLAGS is defined to stop LT_INIT adding -g ++CFLAGS="$CFLAGS " ++ ++# Use libtool to make a shared library. ++case `pwd` in ++ *\ * | *\ *) ++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: Libtool does not cope well with whitespace in \`pwd\`" >&5 ++$as_echo "$as_me: WARNING: Libtool does not cope well with whitespace in \`pwd\`" >&2;} ;; ++esac ++ ++ ++ ++macro_version='2.2.6b' ++macro_revision='1.3017' ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ltmain="$ac_aux_dir/ltmain.sh" ++ ++# Make sure we can run config.sub. ++$SHELL "$ac_aux_dir/config.sub" sun4 >/dev/null 2>&1 || ++ as_fn_error "cannot run $SHELL $ac_aux_dir/config.sub" "$LINENO" 5 ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking build system type" >&5 ++$as_echo_n "checking build system type... " >&6; } ++if test "${ac_cv_build+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_build_alias=$build_alias ++test "x$ac_build_alias" = x && ++ ac_build_alias=`$SHELL "$ac_aux_dir/config.guess"` ++test "x$ac_build_alias" = x && ++ as_fn_error "cannot guess build type; you must specify one" "$LINENO" 5 ++ac_cv_build=`$SHELL "$ac_aux_dir/config.sub" $ac_build_alias` || ++ as_fn_error "$SHELL $ac_aux_dir/config.sub $ac_build_alias failed" "$LINENO" 5 ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_build" >&5 ++$as_echo "$ac_cv_build" >&6; } ++case $ac_cv_build in ++*-*-*) ;; ++*) as_fn_error "invalid value of canonical build" "$LINENO" 5;; ++esac ++build=$ac_cv_build ++ac_save_IFS=$IFS; IFS='-' ++set x $ac_cv_build ++shift ++build_cpu=$1 ++build_vendor=$2 ++shift; shift ++# Remember, the first character of IFS is used to create $*, ++# except with old shells: ++build_os=$* ++IFS=$ac_save_IFS ++case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking host system type" >&5 ++$as_echo_n "checking host system type... " >&6; } ++if test "${ac_cv_host+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test "x$host_alias" = x; then ++ ac_cv_host=$ac_cv_build ++else ++ ac_cv_host=`$SHELL "$ac_aux_dir/config.sub" $host_alias` || ++ as_fn_error "$SHELL $ac_aux_dir/config.sub $host_alias failed" "$LINENO" 5 ++fi ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_host" >&5 ++$as_echo "$ac_cv_host" >&6; } ++case $ac_cv_host in ++*-*-*) ;; ++*) as_fn_error "invalid value of canonical host" "$LINENO" 5;; ++esac ++host=$ac_cv_host ++ac_save_IFS=$IFS; IFS='-' ++set x $ac_cv_host ++shift ++host_cpu=$1 ++host_vendor=$2 ++shift; shift ++# Remember, the first character of IFS is used to create $*, ++# except with old shells: ++host_os=$* ++IFS=$ac_save_IFS ++case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac ++ ++ ++DEPDIR="${am__leading_dot}deps" ++ ++ac_config_commands="$ac_config_commands depfiles" ++ ++ ++am_make=${MAKE-make} ++cat > confinc << 'END' ++am__doit: ++ @echo this is the am__doit target ++.PHONY: am__doit ++END ++# If we don't find an include directive, just comment out the code. ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for style of include used by $am_make" >&5 ++$as_echo_n "checking for style of include used by $am_make... " >&6; } ++am__include="#" ++am__quote= ++_am_result=none ++# First try GNU make style include. ++echo "include confinc" > confmf ++# Ignore all kinds of additional output from `make'. ++case `$am_make -s -f confmf 2> /dev/null` in #( ++*the\ am__doit\ target*) ++ am__include=include ++ am__quote= ++ _am_result=GNU ++ ;; ++esac ++# Now try BSD make style include. ++if test "$am__include" = "#"; then ++ echo '.include "confinc"' > confmf ++ case `$am_make -s -f confmf 2> /dev/null` in #( ++ *the\ am__doit\ target*) ++ am__include=.include ++ am__quote="\"" ++ _am_result=BSD ++ ;; ++ esac ++fi ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $_am_result" >&5 ++$as_echo "$_am_result" >&6; } ++rm -f confinc confmf ++ ++@%:@ Check whether --enable-dependency-tracking was given. ++if test "${enable_dependency_tracking+set}" = set; then : ++ enableval=$enable_dependency_tracking; ++fi ++ ++if test "x$enable_dependency_tracking" != xno; then ++ am_depcomp="$ac_aux_dir/depcomp" ++ AMDEPBACKSLASH='\' ++fi ++ if test "x$enable_dependency_tracking" != xno; then ++ AMDEP_TRUE= ++ AMDEP_FALSE='#' ++else ++ AMDEP_TRUE='#' ++ AMDEP_FALSE= ++fi ++ ++ ++ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args. ++set dummy ${ac_tool_prefix}gcc; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_CC+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$CC"; then ++ ac_cv_prog_CC="$CC" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_CC="${ac_tool_prefix}gcc" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++CC=$ac_cv_prog_CC ++if test -n "$CC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 ++$as_echo "$CC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$ac_cv_prog_CC"; then ++ ac_ct_CC=$CC ++ # Extract the first word of "gcc", so it can be a program name with args. ++set dummy gcc; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_CC+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_CC"; then ++ ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_CC="gcc" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_CC=$ac_cv_prog_ac_ct_CC ++if test -n "$ac_ct_CC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5 ++$as_echo "$ac_ct_CC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_CC" = x; then ++ CC="" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ CC=$ac_ct_CC ++ fi ++else ++ CC="$ac_cv_prog_CC" ++fi ++ ++if test -z "$CC"; then ++ if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args. ++set dummy ${ac_tool_prefix}cc; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_CC+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$CC"; then ++ ac_cv_prog_CC="$CC" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_CC="${ac_tool_prefix}cc" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++CC=$ac_cv_prog_CC ++if test -n "$CC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 ++$as_echo "$CC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ fi ++fi ++if test -z "$CC"; then ++ # Extract the first word of "cc", so it can be a program name with args. ++set dummy cc; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_CC+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$CC"; then ++ ac_cv_prog_CC="$CC" # Let the user override the test. ++else ++ ac_prog_rejected=no ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then ++ ac_prog_rejected=yes ++ continue ++ fi ++ ac_cv_prog_CC="cc" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++if test $ac_prog_rejected = yes; then ++ # We found a bogon in the path, so make sure we never use it. ++ set dummy $ac_cv_prog_CC ++ shift ++ if test $@%:@ != 0; then ++ # We chose a different compiler from the bogus one. ++ # However, it has the same basename, so the bogon will be chosen ++ # first if we set CC to just the basename; use the full file name. ++ shift ++ ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@" ++ fi ++fi ++fi ++fi ++CC=$ac_cv_prog_CC ++if test -n "$CC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 ++$as_echo "$CC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$CC"; then ++ if test -n "$ac_tool_prefix"; then ++ for ac_prog in cl.exe ++ do ++ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. ++set dummy $ac_tool_prefix$ac_prog; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_CC+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$CC"; then ++ ac_cv_prog_CC="$CC" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_CC="$ac_tool_prefix$ac_prog" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++CC=$ac_cv_prog_CC ++if test -n "$CC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 ++$as_echo "$CC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ test -n "$CC" && break ++ done ++fi ++if test -z "$CC"; then ++ ac_ct_CC=$CC ++ for ac_prog in cl.exe ++do ++ # Extract the first word of "$ac_prog", so it can be a program name with args. ++set dummy $ac_prog; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... 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For instance with Cygwin, `ls conftest' will ++# work properly (i.e., refer to `conftest.exe'), while it won't with ++# `rm'. ++for ac_file in conftest.exe conftest conftest.*; do ++ test -f "$ac_file" || continue ++ case $ac_file in ++ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;; ++ *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'` ++ break;; ++ * ) break;; ++ esac ++done ++else ++ { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5 ++$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} ++as_fn_error "cannot compute suffix of executables: cannot compile and link ++See \`config.log' for more details." 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Curiously '\x00'!='x' always comes out true, for an ++ array size at least. It's necessary to write '\x00'==0 to get something ++ that's true only with -std. */ ++int osf4_cc_array ['\x00' == 0 ? 1 : -1]; ++ ++/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters ++ inside strings and character constants. */ ++#define FOO(x) 'x' ++int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1]; ++ ++int test (int i, double x); ++struct s1 {int (*f) (int a);}; ++struct s2 {int (*f) (double a);}; ++int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); ++int argc; ++char **argv; ++int ++main () ++{ ++return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ++ ; ++ return 0; ++} ++_ACEOF ++for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \ ++ -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__" ++do ++ CC="$ac_save_CC $ac_arg" ++ if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_prog_cc_c89=$ac_arg ++fi ++rm -f core conftest.err conftest.$ac_objext ++ test "x$ac_cv_prog_cc_c89" != "xno" && break ++done ++rm -f conftest.$ac_ext ++CC=$ac_save_CC ++ ++fi ++# AC_CACHE_VAL ++case "x$ac_cv_prog_cc_c89" in ++ x) ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: none needed" >&5 ++$as_echo "none needed" >&6; } ;; ++ xno) ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5 ++$as_echo "unsupported" >&6; } ;; ++ *) ++ CC="$CC $ac_cv_prog_cc_c89" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c89" >&5 ++$as_echo "$ac_cv_prog_cc_c89" >&6; } ;; ++esac ++if test "x$ac_cv_prog_cc_c89" != xno; then : ++ ++fi ++ ++ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++ ++depcc="$CC" am_compiler_list= ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking dependency style of $depcc" >&5 ++$as_echo_n "checking dependency style of $depcc... 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For instance ++ # both Tru64's cc and ICC support -MD to output dependencies as a ++ # side effect of compilation, but ICC will put the dependencies in ++ # the current directory while Tru64 will put them in the object ++ # directory. ++ mkdir sub ++ ++ am_cv_CC_dependencies_compiler_type=none ++ if test "$am_compiler_list" = ""; then ++ am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp` ++ fi ++ am__universal=false ++ case " $depcc " in #( ++ *\ -arch\ *\ -arch\ *) am__universal=true ;; ++ esac ++ ++ for depmode in $am_compiler_list; do ++ # Setup a source with many dependencies, because some compilers ++ # like to wrap large dependency lists on column 80 (with \), and ++ # we should not choose a depcomp mode which is confused by this. ++ # ++ # We need to recreate these files for each test, as the compiler may ++ # overwrite some of them when testing with obscure command lines. ++ # This happens at least with the AIX C compiler. ++ : > sub/conftest.c ++ for i in 1 2 3 4 5 6; do ++ echo '#include "conftst'$i'.h"' >> sub/conftest.c ++ # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with ++ # Solaris 8's {/usr,}/bin/sh. ++ touch sub/conftst$i.h ++ done ++ echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf ++ ++ # We check with `-c' and `-o' for the sake of the "dashmstdout" ++ # mode. It turns out that the SunPro C++ compiler does not properly ++ # handle `-M -o', and we need to detect this. Also, some Intel ++ # versions had trouble with output in subdirs ++ am__obj=sub/conftest.${OBJEXT-o} ++ am__minus_obj="-o $am__obj" ++ case $depmode in ++ gcc) ++ # This depmode causes a compiler race in universal mode. ++ test "$am__universal" = false || continue ++ ;; ++ nosideeffect) ++ # after this tag, mechanisms are not by side-effect, so they'll ++ # only be used when explicitly requested ++ if test "x$enable_dependency_tracking" = xyes; then ++ continue ++ else ++ break ++ fi ++ ;; ++ msvisualcpp | msvcmsys) ++ # This compiler won't grok `-c -o', but also, the minuso test has ++ # not run yet. These depmodes are late enough in the game, and ++ # so weak that their functioning should not be impacted. ++ am__obj=conftest.${OBJEXT-o} ++ am__minus_obj= ++ ;; ++ none) break ;; ++ esac ++ if depmode=$depmode \ ++ source=sub/conftest.c object=$am__obj \ ++ depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \ ++ $SHELL ./depcomp $depcc -c $am__minus_obj sub/conftest.c \ ++ >/dev/null 2>conftest.err && ++ grep sub/conftst1.h sub/conftest.Po > /dev/null 2>&1 && ++ grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 && ++ grep $am__obj sub/conftest.Po > /dev/null 2>&1 && ++ ${MAKE-make} -s -f confmf > /dev/null 2>&1; then ++ # icc doesn't choke on unknown options, it will just issue warnings ++ # or remarks (even with -Werror). So we grep stderr for any message ++ # that says an option was ignored or not supported. ++ # When given -MP, icc 7.0 and 7.1 complain thusly: ++ # icc: Command line warning: ignoring option '-M'; no argument required ++ # The diagnosis changed in icc 8.0: ++ # icc: Command line remark: option '-MP' not supported ++ if (grep 'ignoring option' conftest.err || ++ grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else ++ am_cv_CC_dependencies_compiler_type=$depmode ++ break ++ fi ++ fi ++ done ++ ++ cd .. ++ rm -rf conftest.dir ++else ++ am_cv_CC_dependencies_compiler_type=none ++fi ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $am_cv_CC_dependencies_compiler_type" >&5 ++$as_echo "$am_cv_CC_dependencies_compiler_type" >&6; } ++CCDEPMODE=depmode=$am_cv_CC_dependencies_compiler_type ++ ++ if ++ test "x$enable_dependency_tracking" != xno \ ++ && test "$am_cv_CC_dependencies_compiler_type" = gcc3; then ++ am__fastdepCC_TRUE= ++ am__fastdepCC_FALSE='#' ++else ++ am__fastdepCC_TRUE='#' ++ am__fastdepCC_FALSE= ++fi ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for a sed that does not truncate output" >&5 ++$as_echo_n "checking for a sed that does not truncate output... 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I'd rather use --version, ++ # but apparently some variants of GNU ld only accept -v. ++ # Break only if it was the GNU/non-GNU ld that we prefer. ++ case `"$lt_cv_path_LD" -v 2>&1 &5 ++$as_echo "$LD" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++test -z "$LD" && as_fn_error "no acceptable ld found in \$PATH" "$LINENO" 5 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if the linker ($LD) is GNU ld" >&5 ++$as_echo_n "checking if the linker ($LD) is GNU ld... " >&6; } ++if test "${lt_cv_prog_gnu_ld+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ # I'd rather use --version here, but apparently some GNU lds only accept -v. ++case `$LD -v 2>&1 &5 ++$as_echo "$lt_cv_prog_gnu_ld" >&6; } ++with_gnu_ld=$lt_cv_prog_gnu_ld ++ ++ ++ ++ ++ ++ ++ ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for BSD- or MS-compatible name lister (nm)" >&5 ++$as_echo_n "checking for BSD- or MS-compatible name lister (nm)... " >&6; } ++if test "${lt_cv_path_NM+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$NM"; then ++ # Let the user override the test. ++ lt_cv_path_NM="$NM" ++else ++ lt_nm_to_check="${ac_tool_prefix}nm" ++ if test -n "$ac_tool_prefix" && test "$build" = "$host"; then ++ lt_nm_to_check="$lt_nm_to_check nm" ++ fi ++ for lt_tmp_nm in $lt_nm_to_check; do ++ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR ++ for ac_dir in $PATH /usr/ccs/bin/elf /usr/ccs/bin /usr/ucb /bin; do ++ IFS="$lt_save_ifs" ++ test -z "$ac_dir" && ac_dir=. ++ tmp_nm="$ac_dir/$lt_tmp_nm" ++ if test -f "$tmp_nm" || test -f "$tmp_nm$ac_exeext" ; then ++ # Check to see if the nm accepts a BSD-compat flag. ++ # Adding the `sed 1q' prevents false positives on HP-UX, which says: ++ # nm: unknown option "B" ignored ++ # Tru64's nm complains that /dev/null is an invalid object file ++ case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in ++ */dev/null* | *'Invalid file or object type'*) ++ lt_cv_path_NM="$tmp_nm -B" ++ break ++ ;; ++ *) ++ case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in ++ */dev/null*) ++ lt_cv_path_NM="$tmp_nm -p" ++ break ++ ;; ++ *) ++ lt_cv_path_NM=${lt_cv_path_NM="$tmp_nm"} # keep the first match, but ++ continue # so that we can try to find one that supports BSD flags ++ ;; ++ esac ++ ;; ++ esac ++ fi ++ done ++ IFS="$lt_save_ifs" ++ done ++ : ${lt_cv_path_NM=no} ++fi ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_path_NM" >&5 ++$as_echo "$lt_cv_path_NM" >&6; } ++if test "$lt_cv_path_NM" != "no"; then ++ NM="$lt_cv_path_NM" ++else ++ # Didn't find any BSD compatible name lister, look for dumpbin. ++ if test -n "$ac_tool_prefix"; then ++ for ac_prog in "dumpbin -symbols" "link -dump -symbols" ++ do ++ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. ++set dummy $ac_tool_prefix$ac_prog; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_DUMPBIN+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$DUMPBIN"; then ++ ac_cv_prog_DUMPBIN="$DUMPBIN" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_DUMPBIN="$ac_tool_prefix$ac_prog" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++DUMPBIN=$ac_cv_prog_DUMPBIN ++if test -n "$DUMPBIN"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $DUMPBIN" >&5 ++$as_echo "$DUMPBIN" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ test -n "$DUMPBIN" && break ++ done ++fi ++if test -z "$DUMPBIN"; then ++ ac_ct_DUMPBIN=$DUMPBIN ++ for ac_prog in "dumpbin -symbols" "link -dump -symbols" ++do ++ # Extract the first word of "$ac_prog", so it can be a program name with args. ++set dummy $ac_prog; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_DUMPBIN+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_DUMPBIN"; then ++ ac_cv_prog_ac_ct_DUMPBIN="$ac_ct_DUMPBIN" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_DUMPBIN="$ac_prog" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_DUMPBIN=$ac_cv_prog_ac_ct_DUMPBIN ++if test -n "$ac_ct_DUMPBIN"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_DUMPBIN" >&5 ++$as_echo "$ac_ct_DUMPBIN" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ test -n "$ac_ct_DUMPBIN" && break ++done ++ ++ if test "x$ac_ct_DUMPBIN" = x; then ++ DUMPBIN=":" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ DUMPBIN=$ac_ct_DUMPBIN ++ fi ++fi ++ ++ ++ if test "$DUMPBIN" != ":"; then ++ NM="$DUMPBIN" ++ fi ++fi ++test -z "$NM" && NM=nm ++ ++ ++ ++ ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking the name lister ($NM) interface" >&5 ++$as_echo_n "checking the name lister ($NM) interface... " >&6; } ++if test "${lt_cv_nm_interface+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ lt_cv_nm_interface="BSD nm" ++ echo "int some_variable = 0;" > conftest.$ac_ext ++ (eval echo "\"\$as_me:__oline__: $ac_compile\"" >&5) ++ (eval "$ac_compile" 2>conftest.err) ++ cat conftest.err >&5 ++ (eval echo "\"\$as_me:__oline__: $NM \\\"conftest.$ac_objext\\\"\"" >&5) ++ (eval "$NM \"conftest.$ac_objext\"" 2>conftest.err > conftest.out) ++ cat conftest.err >&5 ++ (eval echo "\"\$as_me:__oline__: output\"" >&5) ++ cat conftest.out >&5 ++ if $GREP 'External.*some_variable' conftest.out > /dev/null; then ++ lt_cv_nm_interface="MS dumpbin" ++ fi ++ rm -f conftest* ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_nm_interface" >&5 ++$as_echo "$lt_cv_nm_interface" >&6; } ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether ln -s works" >&5 ++$as_echo_n "checking whether ln -s works... " >&6; } ++LN_S=$as_ln_s ++if test "$LN_S" = "ln -s"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no, using $LN_S" >&5 ++$as_echo "no, using $LN_S" >&6; } ++fi ++ ++# find the maximum length of command line arguments ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking the maximum length of command line arguments" >&5 ++$as_echo_n "checking the maximum length of command line arguments... " >&6; } ++if test "${lt_cv_sys_max_cmd_len+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ i=0 ++ teststring="ABCD" ++ ++ case $build_os in ++ msdosdjgpp*) ++ # On DJGPP, this test can blow up pretty badly due to problems in libc ++ # (any single argument exceeding 2000 bytes causes a buffer overrun ++ # during glob expansion). Even if it were fixed, the result of this ++ # check would be larger than it should be. ++ lt_cv_sys_max_cmd_len=12288; # 12K is about right ++ ;; ++ ++ gnu*) ++ # Under GNU Hurd, this test is not required because there is ++ # no limit to the length of command line arguments. ++ # Libtool will interpret -1 as no limit whatsoever ++ lt_cv_sys_max_cmd_len=-1; ++ ;; ++ ++ cygwin* | mingw* | cegcc*) ++ # On Win9x/ME, this test blows up -- it succeeds, but takes ++ # about 5 minutes as the teststring grows exponentially. ++ # Worse, since 9x/ME are not pre-emptively multitasking, ++ # you end up with a "frozen" computer, even though with patience ++ # the test eventually succeeds (with a max line length of 256k). ++ # Instead, let's just punt: use the minimum linelength reported by ++ # all of the supported platforms: 8192 (on NT/2K/XP). ++ lt_cv_sys_max_cmd_len=8192; ++ ;; ++ ++ amigaos*) ++ # On AmigaOS with pdksh, this test takes hours, literally. ++ # So we just punt and use a minimum line length of 8192. ++ lt_cv_sys_max_cmd_len=8192; ++ ;; ++ ++ netbsd* | freebsd* | openbsd* | darwin* | dragonfly*) ++ # This has been around since 386BSD, at least. Likely further. ++ if test -x /sbin/sysctl; then ++ lt_cv_sys_max_cmd_len=`/sbin/sysctl -n kern.argmax` ++ elif test -x /usr/sbin/sysctl; then ++ lt_cv_sys_max_cmd_len=`/usr/sbin/sysctl -n kern.argmax` ++ else ++ lt_cv_sys_max_cmd_len=65536 # usable default for all BSDs ++ fi ++ # And add a safety zone ++ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4` ++ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3` ++ ;; ++ ++ interix*) ++ # We know the value 262144 and hardcode it with a safety zone (like BSD) ++ lt_cv_sys_max_cmd_len=196608 ++ ;; ++ ++ osf*) ++ # Dr. Hans Ekkehard Plesser reports seeing a kernel panic running configure ++ # due to this test when exec_disable_arg_limit is 1 on Tru64. It is not ++ # nice to cause kernel panics so lets avoid the loop below. ++ # First set a reasonable default. ++ lt_cv_sys_max_cmd_len=16384 ++ # ++ if test -x /sbin/sysconfig; then ++ case `/sbin/sysconfig -q proc exec_disable_arg_limit` in ++ *1*) lt_cv_sys_max_cmd_len=-1 ;; ++ esac ++ fi ++ ;; ++ sco3.2v5*) ++ lt_cv_sys_max_cmd_len=102400 ++ ;; ++ sysv5* | sco5v6* | sysv4.2uw2*) ++ kargmax=`grep ARG_MAX /etc/conf/cf.d/stune 2>/dev/null` ++ if test -n "$kargmax"; then ++ lt_cv_sys_max_cmd_len=`echo $kargmax | sed 's/.*[ ]//'` ++ else ++ lt_cv_sys_max_cmd_len=32768 ++ fi ++ ;; ++ *) ++ lt_cv_sys_max_cmd_len=`(getconf ARG_MAX) 2> /dev/null` ++ if test -n "$lt_cv_sys_max_cmd_len"; then ++ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4` ++ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3` ++ else ++ # Make teststring a little bigger before we do anything with it. ++ # a 1K string should be a reasonable start. ++ for i in 1 2 3 4 5 6 7 8 ; do ++ teststring=$teststring$teststring ++ done ++ SHELL=${SHELL-${CONFIG_SHELL-/bin/sh}} ++ # If test is not a shell built-in, we'll probably end up computing a ++ # maximum length that is only half of the actual maximum length, but ++ # we can't tell. ++ while { test "X"`$SHELL $0 --fallback-echo "X$teststring$teststring" 2>/dev/null` \ ++ = "XX$teststring$teststring"; } >/dev/null 2>&1 && ++ test $i != 17 # 1/2 MB should be enough ++ do ++ i=`expr $i + 1` ++ teststring=$teststring$teststring ++ done ++ # Only check the string length outside the loop. ++ lt_cv_sys_max_cmd_len=`expr "X$teststring" : ".*" 2>&1` ++ teststring= ++ # Add a significant safety factor because C++ compilers can tack on ++ # massive amounts of additional arguments before passing them to the ++ # linker. It appears as though 1/2 is a usable value. ++ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 2` ++ fi ++ ;; ++ esac ++ ++fi ++ ++if test -n $lt_cv_sys_max_cmd_len ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_sys_max_cmd_len" >&5 ++$as_echo "$lt_cv_sys_max_cmd_len" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: none" >&5 ++$as_echo "none" >&6; } ++fi ++max_cmd_len=$lt_cv_sys_max_cmd_len ++ ++ ++ ++ ++ ++ ++: ${CP="cp -f"} ++: ${MV="mv -f"} ++: ${RM="rm -f"} ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the shell understands some XSI constructs" >&5 ++$as_echo_n "checking whether the shell understands some XSI constructs... " >&6; } ++# Try some XSI features ++xsi_shell=no ++( _lt_dummy="a/b/c" ++ test "${_lt_dummy##*/},${_lt_dummy%/*},"${_lt_dummy%"$_lt_dummy"}, \ ++ = c,a/b,, \ ++ && eval 'test $(( 1 + 1 )) -eq 2 \ ++ && test "${#_lt_dummy}" -eq 5' ) >/dev/null 2>&1 \ ++ && xsi_shell=yes ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $xsi_shell" >&5 ++$as_echo "$xsi_shell" >&6; } ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the shell understands \"+=\"" >&5 ++$as_echo_n "checking whether the shell understands \"+=\"... " >&6; } ++lt_shell_append=no ++( foo=bar; set foo baz; eval "$1+=\$2" && test "$foo" = barbaz ) \ ++ >/dev/null 2>&1 \ ++ && lt_shell_append=yes ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_shell_append" >&5 ++$as_echo "$lt_shell_append" >&6; } ++ ++ ++if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then ++ lt_unset=unset ++else ++ lt_unset=false ++fi ++ ++ ++ ++ ++ ++# test EBCDIC or ASCII ++case `echo X|tr X '\101'` in ++ A) # ASCII based system ++ # \n is not interpreted correctly by Solaris 8 /usr/ucb/tr ++ lt_SP2NL='tr \040 \012' ++ lt_NL2SP='tr \015\012 \040\040' ++ ;; ++ *) # EBCDIC based system ++ lt_SP2NL='tr \100 \n' ++ lt_NL2SP='tr \r\n \100\100' ++ ;; ++esac ++ ++ ++ ++ ++ ++ ++ ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $LD option to reload object files" >&5 ++$as_echo_n "checking for $LD option to reload object files... " >&6; } ++if test "${lt_cv_ld_reload_flag+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ lt_cv_ld_reload_flag='-r' ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_ld_reload_flag" >&5 ++$as_echo "$lt_cv_ld_reload_flag" >&6; } ++reload_flag=$lt_cv_ld_reload_flag ++case $reload_flag in ++"" | " "*) ;; ++*) reload_flag=" $reload_flag" ;; ++esac ++reload_cmds='$LD$reload_flag -o $output$reload_objs' ++case $host_os in ++ darwin*) ++ if test "$GCC" = yes; then ++ reload_cmds='$LTCC $LTCFLAGS -nostdlib ${wl}-r -o $output$reload_objs' ++ else ++ reload_cmds='$LD$reload_flag -o $output$reload_objs' ++ fi ++ ;; ++esac ++ ++ ++ ++ ++ ++ ++ ++ ++ ++if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}objdump", so it can be a program name with args. ++set dummy ${ac_tool_prefix}objdump; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_OBJDUMP+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$OBJDUMP"; then ++ ac_cv_prog_OBJDUMP="$OBJDUMP" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_OBJDUMP="${ac_tool_prefix}objdump" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++OBJDUMP=$ac_cv_prog_OBJDUMP ++if test -n "$OBJDUMP"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $OBJDUMP" >&5 ++$as_echo "$OBJDUMP" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$ac_cv_prog_OBJDUMP"; then ++ ac_ct_OBJDUMP=$OBJDUMP ++ # Extract the first word of "objdump", so it can be a program name with args. ++set dummy objdump; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_OBJDUMP+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_OBJDUMP"; then ++ ac_cv_prog_ac_ct_OBJDUMP="$ac_ct_OBJDUMP" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_OBJDUMP="objdump" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_OBJDUMP=$ac_cv_prog_ac_ct_OBJDUMP ++if test -n "$ac_ct_OBJDUMP"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_OBJDUMP" >&5 ++$as_echo "$ac_ct_OBJDUMP" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_OBJDUMP" = x; then ++ OBJDUMP="false" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ OBJDUMP=$ac_ct_OBJDUMP ++ fi ++else ++ OBJDUMP="$ac_cv_prog_OBJDUMP" ++fi ++ ++test -z "$OBJDUMP" && OBJDUMP=objdump ++ ++ ++ ++ ++ ++ ++ ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking how to recognize dependent libraries" >&5 ++$as_echo_n "checking how to recognize dependent libraries... " >&6; } ++if test "${lt_cv_deplibs_check_method+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ lt_cv_file_magic_cmd='$MAGIC_CMD' ++lt_cv_file_magic_test_file= ++lt_cv_deplibs_check_method='unknown' ++# Need to set the preceding variable on all platforms that support ++# interlibrary dependencies. ++# 'none' -- dependencies not supported. ++# `unknown' -- same as none, but documents that we really don't know. ++# 'pass_all' -- all dependencies passed with no checks. ++# 'test_compile' -- check by making test program. ++# 'file_magic [[regex]]' -- check by looking for files in library path ++# which responds to the $file_magic_cmd with a given extended regex. ++# If you have `file' or equivalent on your system and you're not sure ++# whether `pass_all' will *always* work, you probably want this one. ++ ++case $host_os in ++aix[4-9]*) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ ++beos*) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ ++bsdi[45]*) ++ lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (shared object|dynamic lib)' ++ lt_cv_file_magic_cmd='/usr/bin/file -L' ++ lt_cv_file_magic_test_file=/shlib/libc.so ++ ;; ++ ++cygwin*) ++ # func_win32_libid is a shell function defined in ltmain.sh ++ lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL' ++ lt_cv_file_magic_cmd='func_win32_libid' ++ ;; ++ ++mingw* | pw32*) ++ # Base MSYS/MinGW do not provide the 'file' command needed by ++ # func_win32_libid shell function, so use a weaker test based on 'objdump', ++ # unless we find 'file', for example because we are cross-compiling. ++ if ( file / ) >/dev/null 2>&1; then ++ lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL' ++ lt_cv_file_magic_cmd='func_win32_libid' ++ else ++ lt_cv_deplibs_check_method='file_magic file format pei*-i386(.*architecture: i386)?' ++ lt_cv_file_magic_cmd='$OBJDUMP -f' ++ fi ++ ;; ++ ++cegcc) ++ # use the weaker test based on 'objdump'. See mingw*. ++ lt_cv_deplibs_check_method='file_magic file format pe-arm-.*little(.*architecture: arm)?' ++ lt_cv_file_magic_cmd='$OBJDUMP -f' ++ ;; ++ ++darwin* | rhapsody*) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ ++freebsd* | dragonfly*) ++ if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then ++ case $host_cpu in ++ i*86 ) ++ # Not sure whether the presence of OpenBSD here was a mistake. ++ # Let's accept both of them until this is cleared up. ++ lt_cv_deplibs_check_method='file_magic (FreeBSD|OpenBSD|DragonFly)/i[3-9]86 (compact )?demand paged shared library' ++ lt_cv_file_magic_cmd=/usr/bin/file ++ lt_cv_file_magic_test_file=`echo /usr/lib/libc.so.*` ++ ;; ++ esac ++ else ++ lt_cv_deplibs_check_method=pass_all ++ fi ++ ;; ++ ++gnu*) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ ++hpux10.20* | hpux11*) ++ lt_cv_file_magic_cmd=/usr/bin/file ++ case $host_cpu in ++ ia64*) ++ lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|ELF-[0-9][0-9]) shared object file - IA64' ++ lt_cv_file_magic_test_file=/usr/lib/hpux32/libc.so ++ ;; ++ hppa*64*) ++ lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|ELF-[0-9][0-9]) shared object file - PA-RISC [0-9].[0-9]' ++ lt_cv_file_magic_test_file=/usr/lib/pa20_64/libc.sl ++ ;; ++ *) ++ lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|PA-RISC[0-9].[0-9]) shared library' ++ lt_cv_file_magic_test_file=/usr/lib/libc.sl ++ ;; ++ esac ++ ;; ++ ++interix[3-9]*) ++ # PIC code is broken on Interix 3.x, that's why |\.a not |_pic\.a here ++ lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so|\.a)$' ++ ;; ++ ++irix5* | irix6* | nonstopux*) ++ case $LD in ++ *-32|*"-32 ") libmagic=32-bit;; ++ *-n32|*"-n32 ") libmagic=N32;; ++ *-64|*"-64 ") libmagic=64-bit;; ++ *) libmagic=never-match;; ++ esac ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ ++# This must be Linux ELF. ++linux* | k*bsd*-gnu) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ ++netbsd*) ++ if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then ++ lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|_pic\.a)$' ++ else ++ lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so|_pic\.a)$' ++ fi ++ ;; ++ ++newos6*) ++ lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (executable|dynamic lib)' ++ lt_cv_file_magic_cmd=/usr/bin/file ++ lt_cv_file_magic_test_file=/usr/lib/libnls.so ++ ;; ++ ++*nto* | *qnx*) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ ++openbsd*) ++ if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then ++ lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|\.so|_pic\.a)$' ++ else ++ lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|_pic\.a)$' ++ fi ++ ;; ++ ++osf3* | osf4* | osf5*) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ ++rdos*) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ ++solaris*) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ ++sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ ++sysv4 | sysv4.3*) ++ case $host_vendor in ++ motorola) ++ lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (shared object|dynamic lib) M[0-9][0-9]* Version [0-9]' ++ lt_cv_file_magic_test_file=`echo /usr/lib/libc.so*` ++ ;; ++ ncr) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ sequent) ++ lt_cv_file_magic_cmd='/bin/file' ++ lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [LM]SB (shared object|dynamic lib )' ++ ;; ++ sni) ++ lt_cv_file_magic_cmd='/bin/file' ++ lt_cv_deplibs_check_method="file_magic ELF [0-9][0-9]*-bit [LM]SB dynamic lib" ++ lt_cv_file_magic_test_file=/lib/libc.so ++ ;; ++ siemens) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ pc) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++ esac ++ ;; ++ ++tpf*) ++ lt_cv_deplibs_check_method=pass_all ++ ;; ++esac ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_deplibs_check_method" >&5 ++$as_echo "$lt_cv_deplibs_check_method" >&6; } ++file_magic_cmd=$lt_cv_file_magic_cmd ++deplibs_check_method=$lt_cv_deplibs_check_method ++test -z "$deplibs_check_method" && deplibs_check_method=unknown ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}ar", so it can be a program name with args. ++set dummy ${ac_tool_prefix}ar; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_AR+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$AR"; then ++ ac_cv_prog_AR="$AR" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_AR="${ac_tool_prefix}ar" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++AR=$ac_cv_prog_AR ++if test -n "$AR"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $AR" >&5 ++$as_echo "$AR" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$ac_cv_prog_AR"; then ++ ac_ct_AR=$AR ++ # Extract the first word of "ar", so it can be a program name with args. ++set dummy ar; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_AR+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_AR"; then ++ ac_cv_prog_ac_ct_AR="$ac_ct_AR" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_AR="ar" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_AR=$ac_cv_prog_ac_ct_AR ++if test -n "$ac_ct_AR"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_AR" >&5 ++$as_echo "$ac_ct_AR" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_AR" = x; then ++ AR="false" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ AR=$ac_ct_AR ++ fi ++else ++ AR="$ac_cv_prog_AR" ++fi ++ ++test -z "$AR" && AR=ar ++test -z "$AR_FLAGS" && AR_FLAGS=cru ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args. ++set dummy ${ac_tool_prefix}strip; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_STRIP+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$STRIP"; then ++ ac_cv_prog_STRIP="$STRIP" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_STRIP="${ac_tool_prefix}strip" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++STRIP=$ac_cv_prog_STRIP ++if test -n "$STRIP"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $STRIP" >&5 ++$as_echo "$STRIP" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$ac_cv_prog_STRIP"; then ++ ac_ct_STRIP=$STRIP ++ # Extract the first word of "strip", so it can be a program name with args. ++set dummy strip; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_STRIP"; then ++ ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_STRIP="strip" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP ++if test -n "$ac_ct_STRIP"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_STRIP" >&5 ++$as_echo "$ac_ct_STRIP" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_STRIP" = x; then ++ STRIP=":" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ STRIP=$ac_ct_STRIP ++ fi ++else ++ STRIP="$ac_cv_prog_STRIP" ++fi ++ ++test -z "$STRIP" && STRIP=: ++ ++ ++ ++ ++ ++ ++if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args. ++set dummy ${ac_tool_prefix}ranlib; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_RANLIB+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$RANLIB"; then ++ ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++RANLIB=$ac_cv_prog_RANLIB ++if test -n "$RANLIB"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $RANLIB" >&5 ++$as_echo "$RANLIB" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$ac_cv_prog_RANLIB"; then ++ ac_ct_RANLIB=$RANLIB ++ # Extract the first word of "ranlib", so it can be a program name with args. ++set dummy ranlib; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_RANLIB"; then ++ ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_RANLIB="ranlib" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB ++if test -n "$ac_ct_RANLIB"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_RANLIB" >&5 ++$as_echo "$ac_ct_RANLIB" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_RANLIB" = x; then ++ RANLIB=":" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ RANLIB=$ac_ct_RANLIB ++ fi ++else ++ RANLIB="$ac_cv_prog_RANLIB" ++fi ++ ++test -z "$RANLIB" && RANLIB=: ++ ++ ++ ++ ++ ++ ++# Determine commands to create old-style static archives. ++old_archive_cmds='$AR $AR_FLAGS $oldlib$oldobjs' ++old_postinstall_cmds='chmod 644 $oldlib' ++old_postuninstall_cmds= ++ ++if test -n "$RANLIB"; then ++ case $host_os in ++ openbsd*) ++ old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$oldlib" ++ ;; ++ *) ++ old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$oldlib" ++ ;; ++ esac ++ old_archive_cmds="$old_archive_cmds~\$RANLIB \$oldlib" ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++# If no C compiler was specified, use CC. ++LTCC=${LTCC-"$CC"} ++ ++# If no C compiler flags were specified, use CFLAGS. ++LTCFLAGS=${LTCFLAGS-"$CFLAGS"} ++ ++# Allow CC to be a program name with arguments. ++compiler=$CC ++ ++ ++# Check for command to grab the raw symbol name followed by C symbol from nm. ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking command to parse $NM output from $compiler object" >&5 ++$as_echo_n "checking command to parse $NM output from $compiler object... " >&6; } ++if test "${lt_cv_sys_global_symbol_pipe+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ++# These are sane defaults that work on at least a few old systems. ++# [They come from Ultrix. What could be older than Ultrix?!! ;)] ++ ++# Character class describing NM global symbol codes. ++symcode='[BCDEGRST]' ++ ++# Regexp to match symbols that can be accessed directly from C. ++sympat='\([_A-Za-z][_A-Za-z0-9]*\)' ++ ++# Define system-specific variables. ++case $host_os in ++aix*) ++ symcode='[BCDT]' ++ ;; ++cygwin* | mingw* | pw32* | cegcc*) ++ symcode='[ABCDGISTW]' ++ ;; ++hpux*) ++ if test "$host_cpu" = ia64; then ++ symcode='[ABCDEGRST]' ++ fi ++ ;; ++irix* | nonstopux*) ++ symcode='[BCDEGRST]' ++ ;; ++osf*) ++ symcode='[BCDEGQRST]' ++ ;; ++solaris*) ++ symcode='[BDRT]' ++ ;; ++sco3.2v5*) ++ symcode='[DT]' ++ ;; ++sysv4.2uw2*) ++ symcode='[DT]' ++ ;; ++sysv5* | sco5v6* | unixware* | OpenUNIX*) ++ symcode='[ABDT]' ++ ;; ++sysv4) ++ symcode='[DFNSTU]' ++ ;; ++esac ++ ++# If we're using GNU nm, then use its standard symbol codes. ++case `$NM -V 2>&1` in ++*GNU* | *'with BFD'*) ++ symcode='[ABCDGIRSTW]' ;; ++esac ++ ++# Transform an extracted symbol line into a proper C declaration. ++# Some systems (esp. on ia64) link data and code symbols differently, ++# so use this general approach. ++lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'" ++ ++# Transform an extracted symbol line into symbol name and symbol address ++lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([^ ]*\) \([^ ]*\)$/ {\"\2\", (void *) \&\2},/p'" ++lt_cv_sys_global_symbol_to_c_name_address_lib_prefix="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([^ ]*\) \(lib[^ ]*\)$/ {\"\2\", (void *) \&\2},/p' -e 's/^$symcode* \([^ ]*\) \([^ ]*\)$/ {\"lib\2\", (void *) \&\2},/p'" ++ ++# Handle CRLF in mingw tool chain ++opt_cr= ++case $build_os in ++mingw*) ++ opt_cr=`$ECHO 'x\{0,1\}' | tr x '\015'` # option cr in regexp ++ ;; ++esac ++ ++# Try without a prefix underscore, then with it. ++for ac_symprfx in "" "_"; do ++ ++ # Transform symcode, sympat, and symprfx into a raw symbol and a C symbol. ++ symxfrm="\\1 $ac_symprfx\\2 \\2" ++ ++ # Write the raw and C identifiers. ++ if test "$lt_cv_nm_interface" = "MS dumpbin"; then ++ # Fake it for dumpbin and say T for any non-static function ++ # and D for any global variable. ++ # Also find C++ and __fastcall symbols from MSVC++, ++ # which start with @ or ?. ++ lt_cv_sys_global_symbol_pipe="$AWK '"\ ++" {last_section=section; section=\$ 3};"\ ++" /Section length .*#relocs.*(pick any)/{hide[last_section]=1};"\ ++" \$ 0!~/External *\|/{next};"\ ++" / 0+ UNDEF /{next}; / UNDEF \([^|]\)*()/{next};"\ ++" {if(hide[section]) next};"\ ++" {f=0}; \$ 0~/\(\).*\|/{f=1}; {printf f ? \"T \" : \"D \"};"\ ++" {split(\$ 0, a, /\||\r/); split(a[2], s)};"\ ++" s[1]~/^[@?]/{print s[1], s[1]; next};"\ ++" s[1]~prfx {split(s[1],t,\"@\"); print t[1], substr(t[1],length(prfx))}"\ ++" ' prfx=^$ac_symprfx" ++ else ++ lt_cv_sys_global_symbol_pipe="sed -n -e 's/^.*[ ]\($symcode$symcode*\)[ ][ ]*$ac_symprfx$sympat$opt_cr$/$symxfrm/p'" ++ fi ++ ++ # Check to see that the pipe works correctly. ++ pipe_works=no ++ ++ rm -f conftest* ++ cat > conftest.$ac_ext <<_LT_EOF ++#ifdef __cplusplus ++extern "C" { ++#endif ++char nm_test_var; ++void nm_test_func(void); ++void nm_test_func(void){} ++#ifdef __cplusplus ++} ++#endif ++int main(){nm_test_var='a';nm_test_func();return(0);} ++_LT_EOF ++ ++ if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 ++ (eval $ac_compile) 2>&5 ++ ac_status=$? ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; }; then ++ # Now try to grab the symbols. ++ nlist=conftest.nm ++ if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$NM conftest.$ac_objext \| $lt_cv_sys_global_symbol_pipe \> $nlist\""; } >&5 ++ (eval $NM conftest.$ac_objext \| $lt_cv_sys_global_symbol_pipe \> $nlist) 2>&5 ++ ac_status=$? ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; } && test -s "$nlist"; then ++ # Try sorting and uniquifying the output. ++ if sort "$nlist" | uniq > "$nlist"T; then ++ mv -f "$nlist"T "$nlist" ++ else ++ rm -f "$nlist"T ++ fi ++ ++ # Make sure that we snagged all the symbols we need. ++ if $GREP ' nm_test_var$' "$nlist" >/dev/null; then ++ if $GREP ' nm_test_func$' "$nlist" >/dev/null; then ++ cat <<_LT_EOF > conftest.$ac_ext ++#ifdef __cplusplus ++extern "C" { ++#endif ++ ++_LT_EOF ++ # Now generate the symbol file. ++ eval "$lt_cv_sys_global_symbol_to_cdecl"' < "$nlist" | $GREP -v main >> conftest.$ac_ext' ++ ++ cat <<_LT_EOF >> conftest.$ac_ext ++ ++/* The mapping between symbol names and symbols. */ ++const struct { ++ const char *name; ++ void *address; ++} ++lt__PROGRAM__LTX_preloaded_symbols[] = ++{ ++ { "@PROGRAM@", (void *) 0 }, ++_LT_EOF ++ $SED "s/^$symcode$symcode* \(.*\) \(.*\)$/ {\"\2\", (void *) \&\2},/" < "$nlist" | $GREP -v main >> conftest.$ac_ext ++ cat <<\_LT_EOF >> conftest.$ac_ext ++ {0, (void *) 0} ++}; ++ ++/* This works around a problem in FreeBSD linker */ ++#ifdef FREEBSD_WORKAROUND ++static const void *lt_preloaded_setup() { ++ return lt__PROGRAM__LTX_preloaded_symbols; ++} ++#endif ++ ++#ifdef __cplusplus ++} ++#endif ++_LT_EOF ++ # Now try linking the two files. ++ mv conftest.$ac_objext conftstm.$ac_objext ++ lt_save_LIBS="$LIBS" ++ lt_save_CFLAGS="$CFLAGS" ++ LIBS="conftstm.$ac_objext" ++ CFLAGS="$CFLAGS$lt_prog_compiler_no_builtin_flag" ++ if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_link\""; } >&5 ++ (eval $ac_link) 2>&5 ++ ac_status=$? ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; } && test -s conftest${ac_exeext}; then ++ pipe_works=yes ++ fi ++ LIBS="$lt_save_LIBS" ++ CFLAGS="$lt_save_CFLAGS" ++ else ++ echo "cannot find nm_test_func in $nlist" >&5 ++ fi ++ else ++ echo "cannot find nm_test_var in $nlist" >&5 ++ fi ++ else ++ echo "cannot run $lt_cv_sys_global_symbol_pipe" >&5 ++ fi ++ else ++ echo "$progname: failed program was:" >&5 ++ cat conftest.$ac_ext >&5 ++ fi ++ rm -rf conftest* conftst* ++ ++ # Do not use the global_symbol_pipe unless it works. ++ if test "$pipe_works" = yes; then ++ break ++ else ++ lt_cv_sys_global_symbol_pipe= ++ fi ++done ++ ++fi ++ ++if test -z "$lt_cv_sys_global_symbol_pipe"; then ++ lt_cv_sys_global_symbol_to_cdecl= ++fi ++if test -z "$lt_cv_sys_global_symbol_pipe$lt_cv_sys_global_symbol_to_cdecl"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: failed" >&5 ++$as_echo "failed" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: ok" >&5 ++$as_echo "ok" >&6; } ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++@%:@ Check whether --enable-libtool-lock was given. ++if test "${enable_libtool_lock+set}" = set; then : ++ enableval=$enable_libtool_lock; ++fi ++ ++test "x$enable_libtool_lock" != xno && enable_libtool_lock=yes ++ ++# Some flags need to be propagated to the compiler or linker for good ++# libtool support. ++case $host in ++ia64-*-hpux*) ++ # Find out which ABI we are using. ++ echo 'int i;' > conftest.$ac_ext ++ if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 ++ (eval $ac_compile) 2>&5 ++ ac_status=$? ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; }; then ++ case `/usr/bin/file conftest.$ac_objext` in ++ *ELF-32*) ++ HPUX_IA64_MODE="32" ++ ;; ++ *ELF-64*) ++ HPUX_IA64_MODE="64" ++ ;; ++ esac ++ fi ++ rm -rf conftest* ++ ;; ++*-*-irix6*) ++ # Find out which ABI we are using. ++ echo '#line __oline__ "configure"' > conftest.$ac_ext ++ if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 ++ (eval $ac_compile) 2>&5 ++ ac_status=$? ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; }; then ++ if test "$lt_cv_prog_gnu_ld" = yes; then ++ case `/usr/bin/file conftest.$ac_objext` in ++ *32-bit*) ++ LD="${LD-ld} -melf32bsmip" ++ ;; ++ *N32*) ++ LD="${LD-ld} -melf32bmipn32" ++ ;; ++ *64-bit*) ++ LD="${LD-ld} -melf64bmip" ++ ;; ++ esac ++ else ++ case `/usr/bin/file conftest.$ac_objext` in ++ *32-bit*) ++ LD="${LD-ld} -32" ++ ;; ++ *N32*) ++ LD="${LD-ld} -n32" ++ ;; ++ *64-bit*) ++ LD="${LD-ld} -64" ++ ;; ++ esac ++ fi ++ fi ++ rm -rf conftest* ++ ;; ++ ++x86_64-*kfreebsd*-gnu|x86_64-*linux*|ppc*-*linux*|powerpc*-*linux*| \ ++s390*-*linux*|s390*-*tpf*|sparc*-*linux*) ++ # Find out which ABI we are using. ++ echo 'int i;' > conftest.$ac_ext ++ if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 ++ (eval $ac_compile) 2>&5 ++ ac_status=$? ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; }; then ++ case `/usr/bin/file conftest.o` in ++ *32-bit*) ++ case $host in ++ x86_64-*kfreebsd*-gnu) ++ LD="${LD-ld} -m elf_i386_fbsd" ++ ;; ++ x86_64-*linux*) ++ LD="${LD-ld} -m elf_i386" ++ ;; ++ ppc64-*linux*|powerpc64-*linux*) ++ LD="${LD-ld} -m elf32ppclinux" ++ ;; ++ s390x-*linux*) ++ LD="${LD-ld} -m elf_s390" ++ ;; ++ sparc64-*linux*) ++ LD="${LD-ld} -m elf32_sparc" ++ ;; ++ esac ++ ;; ++ *64-bit*) ++ case $host in ++ x86_64-*kfreebsd*-gnu) ++ LD="${LD-ld} -m elf_x86_64_fbsd" ++ ;; ++ x86_64-*linux*) ++ LD="${LD-ld} -m elf_x86_64" ++ ;; ++ ppc*-*linux*|powerpc*-*linux*) ++ LD="${LD-ld} -m elf64ppc" ++ ;; ++ s390*-*linux*|s390*-*tpf*) ++ LD="${LD-ld} -m elf64_s390" ++ ;; ++ sparc*-*linux*) ++ LD="${LD-ld} -m elf64_sparc" ++ ;; ++ esac ++ ;; ++ esac ++ fi ++ rm -rf conftest* ++ ;; ++ ++*-*-sco3.2v5*) ++ # On SCO OpenServer 5, we need -belf to get full-featured binaries. ++ SAVE_CFLAGS="$CFLAGS" ++ CFLAGS="$CFLAGS -belf" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the C compiler needs -belf" >&5 ++$as_echo_n "checking whether the C compiler needs -belf... " >&6; } ++if test "${lt_cv_cc_needs_belf+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++ ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ lt_cv_cc_needs_belf=yes ++else ++ lt_cv_cc_needs_belf=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++ ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_cc_needs_belf" >&5 ++$as_echo "$lt_cv_cc_needs_belf" >&6; } ++ if test x"$lt_cv_cc_needs_belf" != x"yes"; then ++ # this is probably gcc 2.8.0, egcs 1.0 or newer; no need for -belf ++ CFLAGS="$SAVE_CFLAGS" ++ fi ++ ;; ++sparc*-*solaris*) ++ # Find out which ABI we are using. ++ echo 'int i;' > conftest.$ac_ext ++ if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 ++ (eval $ac_compile) 2>&5 ++ ac_status=$? ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; }; then ++ case `/usr/bin/file conftest.o` in ++ *64-bit*) ++ case $lt_cv_prog_gnu_ld in ++ yes*) LD="${LD-ld} -m elf64_sparc" ;; ++ *) ++ if ${LD-ld} -64 -r -o conftest2.o conftest.o >/dev/null 2>&1; then ++ LD="${LD-ld} -64" ++ fi ++ ;; ++ esac ++ ;; ++ esac ++ fi ++ rm -rf conftest* ++ ;; ++esac ++ ++need_locks="$enable_libtool_lock" ++ ++ ++ case $host_os in ++ rhapsody* | darwin*) ++ if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}dsymutil", so it can be a program name with args. ++set dummy ${ac_tool_prefix}dsymutil; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_DSYMUTIL+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$DSYMUTIL"; then ++ ac_cv_prog_DSYMUTIL="$DSYMUTIL" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_DSYMUTIL="${ac_tool_prefix}dsymutil" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++DSYMUTIL=$ac_cv_prog_DSYMUTIL ++if test -n "$DSYMUTIL"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $DSYMUTIL" >&5 ++$as_echo "$DSYMUTIL" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$ac_cv_prog_DSYMUTIL"; then ++ ac_ct_DSYMUTIL=$DSYMUTIL ++ # Extract the first word of "dsymutil", so it can be a program name with args. ++set dummy dsymutil; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_DSYMUTIL+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_DSYMUTIL"; then ++ ac_cv_prog_ac_ct_DSYMUTIL="$ac_ct_DSYMUTIL" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_DSYMUTIL="dsymutil" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_DSYMUTIL=$ac_cv_prog_ac_ct_DSYMUTIL ++if test -n "$ac_ct_DSYMUTIL"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_DSYMUTIL" >&5 ++$as_echo "$ac_ct_DSYMUTIL" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_DSYMUTIL" = x; then ++ DSYMUTIL=":" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ DSYMUTIL=$ac_ct_DSYMUTIL ++ fi ++else ++ DSYMUTIL="$ac_cv_prog_DSYMUTIL" ++fi ++ ++ if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}nmedit", so it can be a program name with args. ++set dummy ${ac_tool_prefix}nmedit; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_NMEDIT+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$NMEDIT"; then ++ ac_cv_prog_NMEDIT="$NMEDIT" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_NMEDIT="${ac_tool_prefix}nmedit" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++NMEDIT=$ac_cv_prog_NMEDIT ++if test -n "$NMEDIT"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $NMEDIT" >&5 ++$as_echo "$NMEDIT" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$ac_cv_prog_NMEDIT"; then ++ ac_ct_NMEDIT=$NMEDIT ++ # Extract the first word of "nmedit", so it can be a program name with args. ++set dummy nmedit; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_NMEDIT+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_NMEDIT"; then ++ ac_cv_prog_ac_ct_NMEDIT="$ac_ct_NMEDIT" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_NMEDIT="nmedit" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_NMEDIT=$ac_cv_prog_ac_ct_NMEDIT ++if test -n "$ac_ct_NMEDIT"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_NMEDIT" >&5 ++$as_echo "$ac_ct_NMEDIT" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_NMEDIT" = x; then ++ NMEDIT=":" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ NMEDIT=$ac_ct_NMEDIT ++ fi ++else ++ NMEDIT="$ac_cv_prog_NMEDIT" ++fi ++ ++ if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}lipo", so it can be a program name with args. ++set dummy ${ac_tool_prefix}lipo; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_LIPO+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$LIPO"; then ++ ac_cv_prog_LIPO="$LIPO" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_LIPO="${ac_tool_prefix}lipo" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++LIPO=$ac_cv_prog_LIPO ++if test -n "$LIPO"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $LIPO" >&5 ++$as_echo "$LIPO" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$ac_cv_prog_LIPO"; then ++ ac_ct_LIPO=$LIPO ++ # Extract the first word of "lipo", so it can be a program name with args. ++set dummy lipo; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_LIPO+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_LIPO"; then ++ ac_cv_prog_ac_ct_LIPO="$ac_ct_LIPO" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_LIPO="lipo" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_LIPO=$ac_cv_prog_ac_ct_LIPO ++if test -n "$ac_ct_LIPO"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_LIPO" >&5 ++$as_echo "$ac_ct_LIPO" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_LIPO" = x; then ++ LIPO=":" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ LIPO=$ac_ct_LIPO ++ fi ++else ++ LIPO="$ac_cv_prog_LIPO" ++fi ++ ++ if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}otool", so it can be a program name with args. ++set dummy ${ac_tool_prefix}otool; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_OTOOL+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$OTOOL"; then ++ ac_cv_prog_OTOOL="$OTOOL" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_OTOOL="${ac_tool_prefix}otool" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++OTOOL=$ac_cv_prog_OTOOL ++if test -n "$OTOOL"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $OTOOL" >&5 ++$as_echo "$OTOOL" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$ac_cv_prog_OTOOL"; then ++ ac_ct_OTOOL=$OTOOL ++ # Extract the first word of "otool", so it can be a program name with args. ++set dummy otool; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_OTOOL+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_OTOOL"; then ++ ac_cv_prog_ac_ct_OTOOL="$ac_ct_OTOOL" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_OTOOL="otool" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_OTOOL=$ac_cv_prog_ac_ct_OTOOL ++if test -n "$ac_ct_OTOOL"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_OTOOL" >&5 ++$as_echo "$ac_ct_OTOOL" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_OTOOL" = x; then ++ OTOOL=":" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ OTOOL=$ac_ct_OTOOL ++ fi ++else ++ OTOOL="$ac_cv_prog_OTOOL" ++fi ++ ++ if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}otool64", so it can be a program name with args. ++set dummy ${ac_tool_prefix}otool64; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_OTOOL64+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$OTOOL64"; then ++ ac_cv_prog_OTOOL64="$OTOOL64" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_OTOOL64="${ac_tool_prefix}otool64" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++OTOOL64=$ac_cv_prog_OTOOL64 ++if test -n "$OTOOL64"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $OTOOL64" >&5 ++$as_echo "$OTOOL64" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$ac_cv_prog_OTOOL64"; then ++ ac_ct_OTOOL64=$OTOOL64 ++ # Extract the first word of "otool64", so it can be a program name with args. ++set dummy otool64; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_OTOOL64+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_OTOOL64"; then ++ ac_cv_prog_ac_ct_OTOOL64="$ac_ct_OTOOL64" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_OTOOL64="otool64" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_OTOOL64=$ac_cv_prog_ac_ct_OTOOL64 ++if test -n "$ac_ct_OTOOL64"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_OTOOL64" >&5 ++$as_echo "$ac_ct_OTOOL64" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_OTOOL64" = x; then ++ OTOOL64=":" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ OTOOL64=$ac_ct_OTOOL64 ++ fi ++else ++ OTOOL64="$ac_cv_prog_OTOOL64" ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for -single_module linker flag" >&5 ++$as_echo_n "checking for -single_module linker flag... " >&6; } ++if test "${lt_cv_apple_cc_single_mod+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ lt_cv_apple_cc_single_mod=no ++ if test -z "${LT_MULTI_MODULE}"; then ++ # By default we will add the -single_module flag. You can override ++ # by either setting the environment variable LT_MULTI_MODULE ++ # non-empty at configure time, or by adding -multi_module to the ++ # link flags. ++ rm -rf libconftest.dylib* ++ echo "int foo(void){return 1;}" > conftest.c ++ echo "$LTCC $LTCFLAGS $LDFLAGS -o libconftest.dylib \ ++-dynamiclib -Wl,-single_module conftest.c" >&5 ++ $LTCC $LTCFLAGS $LDFLAGS -o libconftest.dylib \ ++ -dynamiclib -Wl,-single_module conftest.c 2>conftest.err ++ _lt_result=$? ++ if test -f libconftest.dylib && test ! -s conftest.err && test $_lt_result = 0; then ++ lt_cv_apple_cc_single_mod=yes ++ else ++ cat conftest.err >&5 ++ fi ++ rm -rf libconftest.dylib* ++ rm -f conftest.* ++ fi ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_apple_cc_single_mod" >&5 ++$as_echo "$lt_cv_apple_cc_single_mod" >&6; } ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for -exported_symbols_list linker flag" >&5 ++$as_echo_n "checking for -exported_symbols_list linker flag... " >&6; } ++if test "${lt_cv_ld_exported_symbols_list+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ lt_cv_ld_exported_symbols_list=no ++ save_LDFLAGS=$LDFLAGS ++ echo "_main" > conftest.sym ++ LDFLAGS="$LDFLAGS -Wl,-exported_symbols_list,conftest.sym" ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ lt_cv_ld_exported_symbols_list=yes ++else ++ lt_cv_ld_exported_symbols_list=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++ LDFLAGS="$save_LDFLAGS" ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_ld_exported_symbols_list" >&5 ++$as_echo "$lt_cv_ld_exported_symbols_list" >&6; } ++ case $host_os in ++ rhapsody* | darwin1.[012]) ++ _lt_dar_allow_undefined='${wl}-undefined ${wl}suppress' ;; ++ darwin1.*) ++ _lt_dar_allow_undefined='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' ;; ++ darwin*) # darwin 5.x on ++ # if running on 10.5 or later, the deployment target defaults ++ # to the OS version, if on x86, and 10.4, the deployment ++ # target defaults to 10.4. Don't you love it? ++ case ${MACOSX_DEPLOYMENT_TARGET-10.0},$host in ++ 10.0,*86*-darwin8*|10.0,*-darwin[91]*) ++ _lt_dar_allow_undefined='${wl}-undefined ${wl}dynamic_lookup' ;; ++ 10.[012]*) ++ _lt_dar_allow_undefined='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' ;; ++ 10.*) ++ _lt_dar_allow_undefined='${wl}-undefined ${wl}dynamic_lookup' ;; ++ esac ++ ;; ++ esac ++ if test "$lt_cv_apple_cc_single_mod" = "yes"; then ++ _lt_dar_single_mod='$single_module' ++ fi ++ if test "$lt_cv_ld_exported_symbols_list" = "yes"; then ++ _lt_dar_export_syms=' ${wl}-exported_symbols_list,$output_objdir/${libname}-symbols.expsym' ++ else ++ _lt_dar_export_syms='~$NMEDIT -s $output_objdir/${libname}-symbols.expsym ${lib}' ++ fi ++ if test "$DSYMUTIL" != ":"; then ++ _lt_dsymutil='~$DSYMUTIL $lib || :' ++ else ++ _lt_dsymutil= ++ fi ++ ;; ++ esac ++ ++ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking how to run the C preprocessor" >&5 ++$as_echo_n "checking how to run the C preprocessor... " >&6; } ++# On Suns, sometimes $CPP names a directory. ++if test -n "$CPP" && test -d "$CPP"; then ++ CPP= ++fi ++if test -z "$CPP"; then ++ if test "${ac_cv_prog_CPP+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ # Double quotes because CPP needs to be expanded ++ for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp" ++ do ++ ac_preproc_ok=false ++for ac_c_preproc_warn_flag in '' yes ++do ++ # Use a header file that comes with gcc, so configuring glibc ++ # with a fresh cross-compiler works. ++ # Prefer to if __STDC__ is defined, since ++ # exists even on freestanding compilers. ++ # On the NeXT, cc -E runs the code through the compiler's parser, ++ # not just through cpp. "Syntax error" is here to catch this case. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++@%:@ifdef __STDC__ ++@%:@ include ++@%:@else ++@%:@ include ++@%:@endif ++ Syntax error ++_ACEOF ++if ac_fn_c_try_cpp "$LINENO"; then : ++ ++else ++ # Broken: fails on valid input. ++continue ++fi ++rm -f conftest.err conftest.$ac_ext ++ ++ # OK, works on sane cases. Now check whether nonexistent headers ++ # can be detected and how. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++@%:@include ++_ACEOF ++if ac_fn_c_try_cpp "$LINENO"; then : ++ # Broken: success on invalid input. ++continue ++else ++ # Passes both tests. ++ac_preproc_ok=: ++break ++fi ++rm -f conftest.err conftest.$ac_ext ++ ++done ++# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. ++rm -f conftest.err conftest.$ac_ext ++if $ac_preproc_ok; then : ++ break ++fi ++ ++ done ++ ac_cv_prog_CPP=$CPP ++ ++fi ++ CPP=$ac_cv_prog_CPP ++else ++ ac_cv_prog_CPP=$CPP ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $CPP" >&5 ++$as_echo "$CPP" >&6; } ++ac_preproc_ok=false ++for ac_c_preproc_warn_flag in '' yes ++do ++ # Use a header file that comes with gcc, so configuring glibc ++ # with a fresh cross-compiler works. ++ # Prefer to if __STDC__ is defined, since ++ # exists even on freestanding compilers. ++ # On the NeXT, cc -E runs the code through the compiler's parser, ++ # not just through cpp. "Syntax error" is here to catch this case. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++@%:@ifdef __STDC__ ++@%:@ include ++@%:@else ++@%:@ include ++@%:@endif ++ Syntax error ++_ACEOF ++if ac_fn_c_try_cpp "$LINENO"; then : ++ ++else ++ # Broken: fails on valid input. ++continue ++fi ++rm -f conftest.err conftest.$ac_ext ++ ++ # OK, works on sane cases. Now check whether nonexistent headers ++ # can be detected and how. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++@%:@include ++_ACEOF ++if ac_fn_c_try_cpp "$LINENO"; then : ++ # Broken: success on invalid input. ++continue ++else ++ # Passes both tests. ++ac_preproc_ok=: ++break ++fi ++rm -f conftest.err conftest.$ac_ext ++ ++done ++# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. ++rm -f conftest.err conftest.$ac_ext ++if $ac_preproc_ok; then : ++ ++else ++ { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5 ++$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} ++as_fn_error "C preprocessor \"$CPP\" fails sanity check ++See \`config.log' for more details." "$LINENO" 5; } ++fi ++ ++ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for ANSI C header files" >&5 ++$as_echo_n "checking for ANSI C header files... " >&6; } ++if test "${ac_cv_header_stdc+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++#include ++#include ++#include ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_header_stdc=yes ++else ++ ac_cv_header_stdc=no ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++ ++if test $ac_cv_header_stdc = yes; then ++ # SunOS 4.x string.h does not declare mem*, contrary to ANSI. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++ ++_ACEOF ++if (eval "$ac_cpp conftest.$ac_ext") 2>&5 | ++ $EGREP "memchr" >/dev/null 2>&1; then : ++ ++else ++ ac_cv_header_stdc=no ++fi ++rm -f conftest* ++ ++fi ++ ++if test $ac_cv_header_stdc = yes; then ++ # ISC 2.0.2 stdlib.h does not declare free, contrary to ANSI. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++ ++_ACEOF ++if (eval "$ac_cpp conftest.$ac_ext") 2>&5 | ++ $EGREP "free" >/dev/null 2>&1; then : ++ ++else ++ ac_cv_header_stdc=no ++fi ++rm -f conftest* ++ ++fi ++ ++if test $ac_cv_header_stdc = yes; then ++ # /bin/cc in Irix-4.0.5 gets non-ANSI ctype macros unless using -ansi. ++ if test "$cross_compiling" = yes; then : ++ : ++else ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++#include ++#if ((' ' & 0x0FF) == 0x020) ++# define ISLOWER(c) ('a' <= (c) && (c) <= 'z') ++# define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) ++#else ++# define ISLOWER(c) \ ++ (('a' <= (c) && (c) <= 'i') \ ++ || ('j' <= (c) && (c) <= 'r') \ ++ || ('s' <= (c) && (c) <= 'z')) ++# define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c)) ++#endif ++ ++#define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) ++int ++main () ++{ ++ int i; ++ for (i = 0; i < 256; i++) ++ if (XOR (islower (i), ISLOWER (i)) ++ || toupper (i) != TOUPPER (i)) ++ return 2; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_run "$LINENO"; then : ++ ++else ++ ac_cv_header_stdc=no ++fi ++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \ ++ conftest.$ac_objext conftest.beam conftest.$ac_ext ++fi ++ ++fi ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_header_stdc" >&5 ++$as_echo "$ac_cv_header_stdc" >&6; } ++if test $ac_cv_header_stdc = yes; then ++ ++$as_echo "@%:@define STDC_HEADERS 1" >>confdefs.h ++ ++fi ++ ++# On IRIX 5.3, sys/types and inttypes.h are conflicting. ++for ac_header in sys/types.h sys/stat.h stdlib.h string.h memory.h strings.h \ ++ inttypes.h stdint.h unistd.h ++do : ++ as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh` ++ac_fn_c_check_header_compile "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default ++" ++eval as_val=\$$as_ac_Header ++ if test "x$as_val" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1 ++_ACEOF ++ ++fi ++ ++done ++ ++ ++for ac_header in dlfcn.h ++do : ++ ac_fn_c_check_header_compile "$LINENO" "dlfcn.h" "ac_cv_header_dlfcn_h" "$ac_includes_default ++" ++if test "x$ac_cv_header_dlfcn_h" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define HAVE_DLFCN_H 1 ++_ACEOF ++ ++fi ++ ++done ++ ++ ++ ++# Set options ++ ++ ++ ++ enable_dlopen=no ++ ++ ++ enable_win32_dll=no ++ ++ ++ @%:@ Check whether --enable-shared was given. ++if test "${enable_shared+set}" = set; then : ++ enableval=$enable_shared; p=${PACKAGE-default} ++ case $enableval in ++ yes) enable_shared=yes ;; ++ no) enable_shared=no ;; ++ *) ++ enable_shared=no ++ # Look at the argument we got. We use all the common list separators. ++ lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR," ++ for pkg in $enableval; do ++ IFS="$lt_save_ifs" ++ if test "X$pkg" = "X$p"; then ++ enable_shared=yes ++ fi ++ done ++ IFS="$lt_save_ifs" ++ ;; ++ esac ++else ++ enable_shared=yes ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ @%:@ Check whether --enable-static was given. ++if test "${enable_static+set}" = set; then : ++ enableval=$enable_static; p=${PACKAGE-default} ++ case $enableval in ++ yes) enable_static=yes ;; ++ no) enable_static=no ;; ++ *) ++ enable_static=no ++ # Look at the argument we got. We use all the common list separators. ++ lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR," ++ for pkg in $enableval; do ++ IFS="$lt_save_ifs" ++ if test "X$pkg" = "X$p"; then ++ enable_static=yes ++ fi ++ done ++ IFS="$lt_save_ifs" ++ ;; ++ esac ++else ++ enable_static=yes ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++@%:@ Check whether --with-pic was given. ++if test "${with_pic+set}" = set; then : ++ withval=$with_pic; pic_mode="$withval" ++else ++ pic_mode=default ++fi ++ ++ ++test -z "$pic_mode" && pic_mode=default ++ ++ ++ ++ ++ ++ ++ ++ @%:@ Check whether --enable-fast-install was given. ++if test "${enable_fast_install+set}" = set; then : ++ enableval=$enable_fast_install; p=${PACKAGE-default} ++ case $enableval in ++ yes) enable_fast_install=yes ;; ++ no) enable_fast_install=no ;; ++ *) ++ enable_fast_install=no ++ # Look at the argument we got. We use all the common list separators. ++ lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR," ++ for pkg in $enableval; do ++ IFS="$lt_save_ifs" ++ if test "X$pkg" = "X$p"; then ++ enable_fast_install=yes ++ fi ++ done ++ IFS="$lt_save_ifs" ++ ;; ++ esac ++else ++ enable_fast_install=yes ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++# This can be used to rebuild libtool when needed ++LIBTOOL_DEPS="$ltmain" ++ ++# Always use our own libtool. ++LIBTOOL='$(SHELL) $(top_builddir)/libtool' ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++test -z "$LN_S" && LN_S="ln -s" ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++if test -n "${ZSH_VERSION+set}" ; then ++ setopt NO_GLOB_SUBST ++fi ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for objdir" >&5 ++$as_echo_n "checking for objdir... " >&6; } ++if test "${lt_cv_objdir+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ rm -f .libs 2>/dev/null ++mkdir .libs 2>/dev/null ++if test -d .libs; then ++ lt_cv_objdir=.libs ++else ++ # MS-DOS does not allow filenames that begin with a dot. ++ lt_cv_objdir=_libs ++fi ++rmdir .libs 2>/dev/null ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_objdir" >&5 ++$as_echo "$lt_cv_objdir" >&6; } ++objdir=$lt_cv_objdir ++ ++ ++ ++ ++ ++cat >>confdefs.h <<_ACEOF ++@%:@define LT_OBJDIR "$lt_cv_objdir/" ++_ACEOF ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++case $host_os in ++aix3*) ++ # AIX sometimes has problems with the GCC collect2 program. For some ++ # reason, if we set the COLLECT_NAMES environment variable, the problems ++ # vanish in a puff of smoke. ++ if test "X${COLLECT_NAMES+set}" != Xset; then ++ COLLECT_NAMES= ++ export COLLECT_NAMES ++ fi ++ ;; ++esac ++ ++# Sed substitution that helps us do robust quoting. It backslashifies ++# metacharacters that are still active within double-quoted strings. ++sed_quote_subst='s/\(["`$\\]\)/\\\1/g' ++ ++# Same as above, but do not quote variable references. ++double_quote_subst='s/\(["`\\]\)/\\\1/g' ++ ++# Sed substitution to delay expansion of an escaped shell variable in a ++# double_quote_subst'ed string. ++delay_variable_subst='s/\\\\\\\\\\\$/\\\\\\$/g' ++ ++# Sed substitution to delay expansion of an escaped single quote. ++delay_single_quote_subst='s/'\''/'\'\\\\\\\'\''/g' ++ ++# Sed substitution to avoid accidental globbing in evaled expressions ++no_glob_subst='s/\*/\\\*/g' ++ ++# Global variables: ++ofile=libtool ++can_build_shared=yes ++ ++# All known linkers require a `.a' archive for static linking (except MSVC, ++# which needs '.lib'). ++libext=a ++ ++with_gnu_ld="$lt_cv_prog_gnu_ld" ++ ++old_CC="$CC" ++old_CFLAGS="$CFLAGS" ++ ++# Set sane defaults for various variables ++test -z "$CC" && CC=cc ++test -z "$LTCC" && LTCC=$CC ++test -z "$LTCFLAGS" && LTCFLAGS=$CFLAGS ++test -z "$LD" && LD=ld ++test -z "$ac_objext" && ac_objext=o ++ ++for cc_temp in $compiler""; do ++ case $cc_temp in ++ compile | *[\\/]compile | ccache | *[\\/]ccache ) ;; ++ distcc | *[\\/]distcc | purify | *[\\/]purify ) ;; ++ \-*) ;; ++ *) break;; ++ esac ++done ++cc_basename=`$ECHO "X$cc_temp" | $Xsed -e 's%.*/%%' -e "s%^$host_alias-%%"` ++ ++ ++# Only perform the check for file, if the check method requires it ++test -z "$MAGIC_CMD" && MAGIC_CMD=file ++case $deplibs_check_method in ++file_magic*) ++ if test "$file_magic_cmd" = '$MAGIC_CMD'; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for ${ac_tool_prefix}file" >&5 ++$as_echo_n "checking for ${ac_tool_prefix}file... " >&6; } ++if test "${lt_cv_path_MAGIC_CMD+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ case $MAGIC_CMD in ++[\\/*] | ?:[\\/]*) ++ lt_cv_path_MAGIC_CMD="$MAGIC_CMD" # Let the user override the test with a path. ++ ;; ++*) ++ lt_save_MAGIC_CMD="$MAGIC_CMD" ++ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR ++ ac_dummy="/usr/bin$PATH_SEPARATOR$PATH" ++ for ac_dir in $ac_dummy; do ++ IFS="$lt_save_ifs" ++ test -z "$ac_dir" && ac_dir=. ++ if test -f $ac_dir/${ac_tool_prefix}file; then ++ lt_cv_path_MAGIC_CMD="$ac_dir/${ac_tool_prefix}file" ++ if test -n "$file_magic_test_file"; then ++ case $deplibs_check_method in ++ "file_magic "*) ++ file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"` ++ MAGIC_CMD="$lt_cv_path_MAGIC_CMD" ++ if eval $file_magic_cmd \$file_magic_test_file 2> /dev/null | ++ $EGREP "$file_magic_regex" > /dev/null; then ++ : ++ else ++ cat <<_LT_EOF 1>&2 ++ ++*** Warning: the command libtool uses to detect shared libraries, ++*** $file_magic_cmd, produces output that libtool cannot recognize. ++*** The result is that libtool may fail to recognize shared libraries ++*** as such. This will affect the creation of libtool libraries that ++*** depend on shared libraries, but programs linked with such libtool ++*** libraries will work regardless of this problem. Nevertheless, you ++*** may want to report the problem to your system manager and/or to ++*** bug-libtool@gnu.org ++ ++_LT_EOF ++ fi ;; ++ esac ++ fi ++ break ++ fi ++ done ++ IFS="$lt_save_ifs" ++ MAGIC_CMD="$lt_save_MAGIC_CMD" ++ ;; ++esac ++fi ++ ++MAGIC_CMD="$lt_cv_path_MAGIC_CMD" ++if test -n "$MAGIC_CMD"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $MAGIC_CMD" >&5 ++$as_echo "$MAGIC_CMD" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ ++ ++ ++if test -z "$lt_cv_path_MAGIC_CMD"; then ++ if test -n "$ac_tool_prefix"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for file" >&5 ++$as_echo_n "checking for file... " >&6; } ++if test "${lt_cv_path_MAGIC_CMD+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ case $MAGIC_CMD in ++[\\/*] | ?:[\\/]*) ++ lt_cv_path_MAGIC_CMD="$MAGIC_CMD" # Let the user override the test with a path. ++ ;; ++*) ++ lt_save_MAGIC_CMD="$MAGIC_CMD" ++ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR ++ ac_dummy="/usr/bin$PATH_SEPARATOR$PATH" ++ for ac_dir in $ac_dummy; do ++ IFS="$lt_save_ifs" ++ test -z "$ac_dir" && ac_dir=. ++ if test -f $ac_dir/file; then ++ lt_cv_path_MAGIC_CMD="$ac_dir/file" ++ if test -n "$file_magic_test_file"; then ++ case $deplibs_check_method in ++ "file_magic "*) ++ file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"` ++ MAGIC_CMD="$lt_cv_path_MAGIC_CMD" ++ if eval $file_magic_cmd \$file_magic_test_file 2> /dev/null | ++ $EGREP "$file_magic_regex" > /dev/null; then ++ : ++ else ++ cat <<_LT_EOF 1>&2 ++ ++*** Warning: the command libtool uses to detect shared libraries, ++*** $file_magic_cmd, produces output that libtool cannot recognize. ++*** The result is that libtool may fail to recognize shared libraries ++*** as such. This will affect the creation of libtool libraries that ++*** depend on shared libraries, but programs linked with such libtool ++*** libraries will work regardless of this problem. Nevertheless, you ++*** may want to report the problem to your system manager and/or to ++*** bug-libtool@gnu.org ++ ++_LT_EOF ++ fi ;; ++ esac ++ fi ++ break ++ fi ++ done ++ IFS="$lt_save_ifs" ++ MAGIC_CMD="$lt_save_MAGIC_CMD" ++ ;; ++esac ++fi ++ ++MAGIC_CMD="$lt_cv_path_MAGIC_CMD" ++if test -n "$MAGIC_CMD"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $MAGIC_CMD" >&5 ++$as_echo "$MAGIC_CMD" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ else ++ MAGIC_CMD=: ++ fi ++fi ++ ++ fi ++ ;; ++esac ++ ++# Use C for the default configuration in the libtool script ++ ++lt_save_CC="$CC" ++ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++ ++ ++# Source file extension for C test sources. ++ac_ext=c ++ ++# Object file extension for compiled C test sources. ++objext=o ++objext=$objext ++ ++# Code to be used in simple compile tests ++lt_simple_compile_test_code="int some_variable = 0;" ++ ++# Code to be used in simple link tests ++lt_simple_link_test_code='int main(){return(0);}' ++ ++ ++ ++ ++ ++ ++ ++# If no C compiler was specified, use CC. ++LTCC=${LTCC-"$CC"} ++ ++# If no C compiler flags were specified, use CFLAGS. ++LTCFLAGS=${LTCFLAGS-"$CFLAGS"} ++ ++# Allow CC to be a program name with arguments. ++compiler=$CC ++ ++# Save the default compiler, since it gets overwritten when the other ++# tags are being tested, and _LT_TAGVAR(compiler, []) is a NOP. ++compiler_DEFAULT=$CC ++ ++# save warnings/boilerplate of simple test code ++ac_outfile=conftest.$ac_objext ++echo "$lt_simple_compile_test_code" >conftest.$ac_ext ++eval "$ac_compile" 2>&1 >/dev/null | $SED '/^$/d; /^ *+/d' >conftest.err ++_lt_compiler_boilerplate=`cat conftest.err` ++$RM conftest* ++ ++ac_outfile=conftest.$ac_objext ++echo "$lt_simple_link_test_code" >conftest.$ac_ext ++eval "$ac_link" 2>&1 >/dev/null | $SED '/^$/d; /^ *+/d' >conftest.err ++_lt_linker_boilerplate=`cat conftest.err` ++$RM -r conftest* ++ ++ ++if test -n "$compiler"; then ++ ++lt_prog_compiler_no_builtin_flag= ++ ++if test "$GCC" = yes; then ++ lt_prog_compiler_no_builtin_flag=' -fno-builtin' ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking if $compiler supports -fno-rtti -fno-exceptions" >&5 ++$as_echo_n "checking if $compiler supports -fno-rtti -fno-exceptions... " >&6; } ++if test "${lt_cv_prog_compiler_rtti_exceptions+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ lt_cv_prog_compiler_rtti_exceptions=no ++ ac_outfile=conftest.$ac_objext ++ echo "$lt_simple_compile_test_code" > conftest.$ac_ext ++ lt_compiler_flag="-fno-rtti -fno-exceptions" ++ # Insert the option either (1) after the last *FLAGS variable, or ++ # (2) before a word containing "conftest.", or (3) at the end. ++ # Note that $ac_compile itself does not contain backslashes and begins ++ # with a dollar sign (not a hyphen), so the echo should work correctly. ++ # The option is referenced via a variable to avoid confusing sed. ++ lt_compile=`echo "$ac_compile" | $SED \ ++ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ ++ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ ++ -e 's:$: $lt_compiler_flag:'` ++ (eval echo "\"\$as_me:__oline__: $lt_compile\"" >&5) ++ (eval "$lt_compile" 2>conftest.err) ++ ac_status=$? ++ cat conftest.err >&5 ++ echo "$as_me:__oline__: \$? = $ac_status" >&5 ++ if (exit $ac_status) && test -s "$ac_outfile"; then ++ # The compiler can only warn and ignore the option if not recognized ++ # So say no if there are warnings other than the usual output. ++ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' >conftest.exp ++ $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2 ++ if test ! -s conftest.er2 || diff conftest.exp conftest.er2 >/dev/null; then ++ lt_cv_prog_compiler_rtti_exceptions=yes ++ fi ++ fi ++ $RM conftest* ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_prog_compiler_rtti_exceptions" >&5 ++$as_echo "$lt_cv_prog_compiler_rtti_exceptions" >&6; } ++ ++if test x"$lt_cv_prog_compiler_rtti_exceptions" = xyes; then ++ lt_prog_compiler_no_builtin_flag="$lt_prog_compiler_no_builtin_flag -fno-rtti -fno-exceptions" ++else ++ : ++fi ++ ++fi ++ ++ ++ ++ ++ ++ ++ lt_prog_compiler_wl= ++lt_prog_compiler_pic= ++lt_prog_compiler_static= ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $compiler option to produce PIC" >&5 ++$as_echo_n "checking for $compiler option to produce PIC... " >&6; } ++ ++ if test "$GCC" = yes; then ++ lt_prog_compiler_wl='-Wl,' ++ lt_prog_compiler_static='-static' ++ ++ case $host_os in ++ aix*) ++ # All AIX code is PIC. ++ if test "$host_cpu" = ia64; then ++ # AIX 5 now supports IA64 processor ++ lt_prog_compiler_static='-Bstatic' ++ fi ++ ;; ++ ++ amigaos*) ++ case $host_cpu in ++ powerpc) ++ # see comment about AmigaOS4 .so support ++ lt_prog_compiler_pic='-fPIC' ++ ;; ++ m68k) ++ # FIXME: we need at least 68020 code to build shared libraries, but ++ # adding the `-m68020' flag to GCC prevents building anything better, ++ # like `-m68040'. ++ lt_prog_compiler_pic='-m68020 -resident32 -malways-restore-a4' ++ ;; ++ esac ++ ;; ++ ++ beos* | irix5* | irix6* | nonstopux* | osf3* | osf4* | osf5*) ++ # PIC is the default for these OSes. ++ ;; ++ ++ mingw* | cygwin* | pw32* | os2* | cegcc*) ++ # This hack is so that the source file can tell whether it is being ++ # built for inclusion in a dll (and should export symbols for example). ++ # Although the cygwin gcc ignores -fPIC, still need this for old-style ++ # (--disable-auto-import) libraries ++ lt_prog_compiler_pic='-DDLL_EXPORT' ++ ;; ++ ++ darwin* | rhapsody*) ++ # PIC is the default on this platform ++ # Common symbols not allowed in MH_DYLIB files ++ lt_prog_compiler_pic='-fno-common' ++ ;; ++ ++ hpux*) ++ # PIC is the default for 64-bit PA HP-UX, but not for 32-bit ++ # PA HP-UX. On IA64 HP-UX, PIC is the default but the pic flag ++ # sets the default TLS model and affects inlining. ++ case $host_cpu in ++ hppa*64*) ++ # +Z the default ++ ;; ++ *) ++ lt_prog_compiler_pic='-fPIC' ++ ;; ++ esac ++ ;; ++ ++ interix[3-9]*) ++ # Interix 3.x gcc -fpic/-fPIC options generate broken code. ++ # Instead, we relocate shared libraries at runtime. ++ ;; ++ ++ msdosdjgpp*) ++ # Just because we use GCC doesn't mean we suddenly get shared libraries ++ # on systems that don't support them. ++ lt_prog_compiler_can_build_shared=no ++ enable_shared=no ++ ;; ++ ++ *nto* | *qnx*) ++ # QNX uses GNU C++, but need to define -shared option too, otherwise ++ # it will coredump. ++ lt_prog_compiler_pic='-fPIC -shared' ++ ;; ++ ++ sysv4*MP*) ++ if test -d /usr/nec; then ++ lt_prog_compiler_pic=-Kconform_pic ++ fi ++ ;; ++ ++ *) ++ lt_prog_compiler_pic='-fPIC' ++ ;; ++ esac ++ else ++ # PORTME Check for flag to pass linker flags through the system compiler. ++ case $host_os in ++ aix*) ++ lt_prog_compiler_wl='-Wl,' ++ if test "$host_cpu" = ia64; then ++ # AIX 5 now supports IA64 processor ++ lt_prog_compiler_static='-Bstatic' ++ else ++ lt_prog_compiler_static='-bnso -bI:/lib/syscalls.exp' ++ fi ++ ;; ++ ++ mingw* | cygwin* | pw32* | os2* | cegcc*) ++ # This hack is so that the source file can tell whether it is being ++ # built for inclusion in a dll (and should export symbols for example). ++ lt_prog_compiler_pic='-DDLL_EXPORT' ++ ;; ++ ++ hpux9* | hpux10* | hpux11*) ++ lt_prog_compiler_wl='-Wl,' ++ # PIC is the default for IA64 HP-UX and 64-bit HP-UX, but ++ # not for PA HP-UX. ++ case $host_cpu in ++ hppa*64*|ia64*) ++ # +Z the default ++ ;; ++ *) ++ lt_prog_compiler_pic='+Z' ++ ;; ++ esac ++ # Is there a better lt_prog_compiler_static that works with the bundled CC? ++ lt_prog_compiler_static='${wl}-a ${wl}archive' ++ ;; ++ ++ irix5* | irix6* | nonstopux*) ++ lt_prog_compiler_wl='-Wl,' ++ # PIC (with -KPIC) is the default. ++ lt_prog_compiler_static='-non_shared' ++ ;; ++ ++ linux* | k*bsd*-gnu) ++ case $cc_basename in ++ # old Intel for x86_64 which still supported -KPIC. ++ ecc*) ++ lt_prog_compiler_wl='-Wl,' ++ lt_prog_compiler_pic='-KPIC' ++ lt_prog_compiler_static='-static' ++ ;; ++ # icc used to be incompatible with GCC. ++ # ICC 10 doesn't accept -KPIC any more. ++ icc* | ifort*) ++ lt_prog_compiler_wl='-Wl,' ++ lt_prog_compiler_pic='-fPIC' ++ lt_prog_compiler_static='-static' ++ ;; ++ # Lahey Fortran 8.1. ++ lf95*) ++ lt_prog_compiler_wl='-Wl,' ++ lt_prog_compiler_pic='--shared' ++ lt_prog_compiler_static='--static' ++ ;; ++ pgcc* | pgf77* | pgf90* | pgf95*) ++ # Portland Group compilers (*not* the Pentium gcc compiler, ++ # which looks to be a dead project) ++ lt_prog_compiler_wl='-Wl,' ++ lt_prog_compiler_pic='-fpic' ++ lt_prog_compiler_static='-Bstatic' ++ ;; ++ ccc*) ++ lt_prog_compiler_wl='-Wl,' ++ # All Alpha code is PIC. ++ lt_prog_compiler_static='-non_shared' ++ ;; ++ xl*) ++ # IBM XL C 8.0/Fortran 10.1 on PPC ++ lt_prog_compiler_wl='-Wl,' ++ lt_prog_compiler_pic='-qpic' ++ lt_prog_compiler_static='-qstaticlink' ++ ;; ++ *) ++ case `$CC -V 2>&1 | sed 5q` in ++ *Sun\ C*) ++ # Sun C 5.9 ++ lt_prog_compiler_pic='-KPIC' ++ lt_prog_compiler_static='-Bstatic' ++ lt_prog_compiler_wl='-Wl,' ++ ;; ++ *Sun\ F*) ++ # Sun Fortran 8.3 passes all unrecognized flags to the linker ++ lt_prog_compiler_pic='-KPIC' ++ lt_prog_compiler_static='-Bstatic' ++ lt_prog_compiler_wl='' ++ ;; ++ esac ++ ;; ++ esac ++ ;; ++ ++ newsos6) ++ lt_prog_compiler_pic='-KPIC' ++ lt_prog_compiler_static='-Bstatic' ++ ;; ++ ++ *nto* | *qnx*) ++ # QNX uses GNU C++, but need to define -shared option too, otherwise ++ # it will coredump. ++ lt_prog_compiler_pic='-fPIC -shared' ++ ;; ++ ++ osf3* | osf4* | osf5*) ++ lt_prog_compiler_wl='-Wl,' ++ # All OSF/1 code is PIC. ++ lt_prog_compiler_static='-non_shared' ++ ;; ++ ++ rdos*) ++ lt_prog_compiler_static='-non_shared' ++ ;; ++ ++ solaris*) ++ lt_prog_compiler_pic='-KPIC' ++ lt_prog_compiler_static='-Bstatic' ++ case $cc_basename in ++ f77* | f90* | f95*) ++ lt_prog_compiler_wl='-Qoption ld ';; ++ *) ++ lt_prog_compiler_wl='-Wl,';; ++ esac ++ ;; ++ ++ sunos4*) ++ lt_prog_compiler_wl='-Qoption ld ' ++ lt_prog_compiler_pic='-PIC' ++ lt_prog_compiler_static='-Bstatic' ++ ;; ++ ++ sysv4 | sysv4.2uw2* | sysv4.3*) ++ lt_prog_compiler_wl='-Wl,' ++ lt_prog_compiler_pic='-KPIC' ++ lt_prog_compiler_static='-Bstatic' ++ ;; ++ ++ sysv4*MP*) ++ if test -d /usr/nec ;then ++ lt_prog_compiler_pic='-Kconform_pic' ++ lt_prog_compiler_static='-Bstatic' ++ fi ++ ;; ++ ++ sysv5* | unixware* | sco3.2v5* | sco5v6* | OpenUNIX*) ++ lt_prog_compiler_wl='-Wl,' ++ lt_prog_compiler_pic='-KPIC' ++ lt_prog_compiler_static='-Bstatic' ++ ;; ++ ++ unicos*) ++ lt_prog_compiler_wl='-Wl,' ++ lt_prog_compiler_can_build_shared=no ++ ;; ++ ++ uts4*) ++ lt_prog_compiler_pic='-pic' ++ lt_prog_compiler_static='-Bstatic' ++ ;; ++ ++ *) ++ lt_prog_compiler_can_build_shared=no ++ ;; ++ esac ++ fi ++ ++case $host_os in ++ # For platforms which do not support PIC, -DPIC is meaningless: ++ *djgpp*) ++ lt_prog_compiler_pic= ++ ;; ++ *) ++ lt_prog_compiler_pic="$lt_prog_compiler_pic@&t@ -DPIC" ++ ;; ++esac ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_prog_compiler_pic" >&5 ++$as_echo "$lt_prog_compiler_pic" >&6; } ++ ++ ++ ++ ++ ++ ++# ++# Check to make sure the PIC flag actually works. ++# ++if test -n "$lt_prog_compiler_pic"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking if $compiler PIC flag $lt_prog_compiler_pic works" >&5 ++$as_echo_n "checking if $compiler PIC flag $lt_prog_compiler_pic works... " >&6; } ++if test "${lt_cv_prog_compiler_pic_works+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ lt_cv_prog_compiler_pic_works=no ++ ac_outfile=conftest.$ac_objext ++ echo "$lt_simple_compile_test_code" > conftest.$ac_ext ++ lt_compiler_flag="$lt_prog_compiler_pic@&t@ -DPIC" ++ # Insert the option either (1) after the last *FLAGS variable, or ++ # (2) before a word containing "conftest.", or (3) at the end. ++ # Note that $ac_compile itself does not contain backslashes and begins ++ # with a dollar sign (not a hyphen), so the echo should work correctly. ++ # The option is referenced via a variable to avoid confusing sed. ++ lt_compile=`echo "$ac_compile" | $SED \ ++ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ ++ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ ++ -e 's:$: $lt_compiler_flag:'` ++ (eval echo "\"\$as_me:__oline__: $lt_compile\"" >&5) ++ (eval "$lt_compile" 2>conftest.err) ++ ac_status=$? ++ cat conftest.err >&5 ++ echo "$as_me:__oline__: \$? = $ac_status" >&5 ++ if (exit $ac_status) && test -s "$ac_outfile"; then ++ # The compiler can only warn and ignore the option if not recognized ++ # So say no if there are warnings other than the usual output. ++ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' >conftest.exp ++ $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2 ++ if test ! -s conftest.er2 || diff conftest.exp conftest.er2 >/dev/null; then ++ lt_cv_prog_compiler_pic_works=yes ++ fi ++ fi ++ $RM conftest* ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_prog_compiler_pic_works" >&5 ++$as_echo "$lt_cv_prog_compiler_pic_works" >&6; } ++ ++if test x"$lt_cv_prog_compiler_pic_works" = xyes; then ++ case $lt_prog_compiler_pic in ++ "" | " "*) ;; ++ *) lt_prog_compiler_pic=" $lt_prog_compiler_pic" ;; ++ esac ++else ++ lt_prog_compiler_pic= ++ lt_prog_compiler_can_build_shared=no ++fi ++ ++fi ++ ++ ++ ++ ++ ++ ++# ++# Check to make sure the static flag actually works. ++# ++wl=$lt_prog_compiler_wl eval lt_tmp_static_flag=\"$lt_prog_compiler_static\" ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if $compiler static flag $lt_tmp_static_flag works" >&5 ++$as_echo_n "checking if $compiler static flag $lt_tmp_static_flag works... " >&6; } ++if test "${lt_cv_prog_compiler_static_works+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ lt_cv_prog_compiler_static_works=no ++ save_LDFLAGS="$LDFLAGS" ++ LDFLAGS="$LDFLAGS $lt_tmp_static_flag" ++ echo "$lt_simple_link_test_code" > conftest.$ac_ext ++ if (eval $ac_link 2>conftest.err) && test -s conftest$ac_exeext; then ++ # The linker can only warn and ignore the option if not recognized ++ # So say no if there are warnings ++ if test -s conftest.err; then ++ # Append any errors to the config.log. ++ cat conftest.err 1>&5 ++ $ECHO "X$_lt_linker_boilerplate" | $Xsed -e '/^$/d' > conftest.exp ++ $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2 ++ if diff conftest.exp conftest.er2 >/dev/null; then ++ lt_cv_prog_compiler_static_works=yes ++ fi ++ else ++ lt_cv_prog_compiler_static_works=yes ++ fi ++ fi ++ $RM -r conftest* ++ LDFLAGS="$save_LDFLAGS" ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_prog_compiler_static_works" >&5 ++$as_echo "$lt_cv_prog_compiler_static_works" >&6; } ++ ++if test x"$lt_cv_prog_compiler_static_works" = xyes; then ++ : ++else ++ lt_prog_compiler_static= ++fi ++ ++ ++ ++ ++ ++ ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking if $compiler supports -c -o file.$ac_objext" >&5 ++$as_echo_n "checking if $compiler supports -c -o file.$ac_objext... " >&6; } ++if test "${lt_cv_prog_compiler_c_o+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ lt_cv_prog_compiler_c_o=no ++ $RM -r conftest 2>/dev/null ++ mkdir conftest ++ cd conftest ++ mkdir out ++ echo "$lt_simple_compile_test_code" > conftest.$ac_ext ++ ++ lt_compiler_flag="-o out/conftest2.$ac_objext" ++ # Insert the option either (1) after the last *FLAGS variable, or ++ # (2) before a word containing "conftest.", or (3) at the end. ++ # Note that $ac_compile itself does not contain backslashes and begins ++ # with a dollar sign (not a hyphen), so the echo should work correctly. ++ lt_compile=`echo "$ac_compile" | $SED \ ++ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ ++ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ ++ -e 's:$: $lt_compiler_flag:'` ++ (eval echo "\"\$as_me:__oline__: $lt_compile\"" >&5) ++ (eval "$lt_compile" 2>out/conftest.err) ++ ac_status=$? ++ cat out/conftest.err >&5 ++ echo "$as_me:__oline__: \$? = $ac_status" >&5 ++ if (exit $ac_status) && test -s out/conftest2.$ac_objext ++ then ++ # The compiler can only warn and ignore the option if not recognized ++ # So say no if there are warnings ++ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' > out/conftest.exp ++ $SED '/^$/d; /^ *+/d' out/conftest.err >out/conftest.er2 ++ if test ! -s out/conftest.er2 || diff out/conftest.exp out/conftest.er2 >/dev/null; then ++ lt_cv_prog_compiler_c_o=yes ++ fi ++ fi ++ chmod u+w . 2>&5 ++ $RM conftest* ++ # SGI C++ compiler will create directory out/ii_files/ for ++ # template instantiation ++ test -d out/ii_files && $RM out/ii_files/* && rmdir out/ii_files ++ $RM out/* && rmdir out ++ cd .. ++ $RM -r conftest ++ $RM conftest* ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_prog_compiler_c_o" >&5 ++$as_echo "$lt_cv_prog_compiler_c_o" >&6; } ++ ++ ++ ++ ++ ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking if $compiler supports -c -o file.$ac_objext" >&5 ++$as_echo_n "checking if $compiler supports -c -o file.$ac_objext... " >&6; } ++if test "${lt_cv_prog_compiler_c_o+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ lt_cv_prog_compiler_c_o=no ++ $RM -r conftest 2>/dev/null ++ mkdir conftest ++ cd conftest ++ mkdir out ++ echo "$lt_simple_compile_test_code" > conftest.$ac_ext ++ ++ lt_compiler_flag="-o out/conftest2.$ac_objext" ++ # Insert the option either (1) after the last *FLAGS variable, or ++ # (2) before a word containing "conftest.", or (3) at the end. ++ # Note that $ac_compile itself does not contain backslashes and begins ++ # with a dollar sign (not a hyphen), so the echo should work correctly. ++ lt_compile=`echo "$ac_compile" | $SED \ ++ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \ ++ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \ ++ -e 's:$: $lt_compiler_flag:'` ++ (eval echo "\"\$as_me:__oline__: $lt_compile\"" >&5) ++ (eval "$lt_compile" 2>out/conftest.err) ++ ac_status=$? ++ cat out/conftest.err >&5 ++ echo "$as_me:__oline__: \$? = $ac_status" >&5 ++ if (exit $ac_status) && test -s out/conftest2.$ac_objext ++ then ++ # The compiler can only warn and ignore the option if not recognized ++ # So say no if there are warnings ++ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' > out/conftest.exp ++ $SED '/^$/d; /^ *+/d' out/conftest.err >out/conftest.er2 ++ if test ! -s out/conftest.er2 || diff out/conftest.exp out/conftest.er2 >/dev/null; then ++ lt_cv_prog_compiler_c_o=yes ++ fi ++ fi ++ chmod u+w . 2>&5 ++ $RM conftest* ++ # SGI C++ compiler will create directory out/ii_files/ for ++ # template instantiation ++ test -d out/ii_files && $RM out/ii_files/* && rmdir out/ii_files ++ $RM out/* && rmdir out ++ cd .. ++ $RM -r conftest ++ $RM conftest* ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_prog_compiler_c_o" >&5 ++$as_echo "$lt_cv_prog_compiler_c_o" >&6; } ++ ++ ++ ++ ++hard_links="nottested" ++if test "$lt_cv_prog_compiler_c_o" = no && test "$need_locks" != no; then ++ # do not overwrite the value of need_locks provided by the user ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking if we can lock with hard links" >&5 ++$as_echo_n "checking if we can lock with hard links... " >&6; } ++ hard_links=yes ++ $RM conftest* ++ ln conftest.a conftest.b 2>/dev/null && hard_links=no ++ touch conftest.a ++ ln conftest.a conftest.b 2>&5 || hard_links=no ++ ln conftest.a conftest.b 2>/dev/null && hard_links=no ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $hard_links" >&5 ++$as_echo "$hard_links" >&6; } ++ if test "$hard_links" = no; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&5 ++$as_echo "$as_me: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&2;} ++ need_locks=warn ++ fi ++else ++ need_locks=no ++fi ++ ++ ++ ++ ++ ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the $compiler linker ($LD) supports shared libraries" >&5 ++$as_echo_n "checking whether the $compiler linker ($LD) supports shared libraries... " >&6; } ++ ++ runpath_var= ++ allow_undefined_flag= ++ always_export_symbols=no ++ archive_cmds= ++ archive_expsym_cmds= ++ compiler_needs_object=no ++ enable_shared_with_static_runtimes=no ++ export_dynamic_flag_spec= ++ export_symbols_cmds='$NM $libobjs $convenience | $global_symbol_pipe | $SED '\''s/.* //'\'' | sort | uniq > $export_symbols' ++ hardcode_automatic=no ++ hardcode_direct=no ++ hardcode_direct_absolute=no ++ hardcode_libdir_flag_spec= ++ hardcode_libdir_flag_spec_ld= ++ hardcode_libdir_separator= ++ hardcode_minus_L=no ++ hardcode_shlibpath_var=unsupported ++ inherit_rpath=no ++ link_all_deplibs=unknown ++ module_cmds= ++ module_expsym_cmds= ++ old_archive_from_new_cmds= ++ old_archive_from_expsyms_cmds= ++ thread_safe_flag_spec= ++ whole_archive_flag_spec= ++ # include_expsyms should be a list of space-separated symbols to be *always* ++ # included in the symbol list ++ include_expsyms= ++ # exclude_expsyms can be an extended regexp of symbols to exclude ++ # it will be wrapped by ` (' and `)$', so one must not match beginning or ++ # end of line. Example: `a|bc|.*d.*' will exclude the symbols `a' and `bc', ++ # as well as any symbol that contains `d'. ++ exclude_expsyms='_GLOBAL_OFFSET_TABLE_|_GLOBAL__F[ID]_.*' ++ # Although _GLOBAL_OFFSET_TABLE_ is a valid symbol C name, most a.out ++ # platforms (ab)use it in PIC code, but their linkers get confused if ++ # the symbol is explicitly referenced. Since portable code cannot ++ # rely on this symbol name, it's probably fine to never include it in ++ # preloaded symbol tables. ++ # Exclude shared library initialization/finalization symbols. ++ extract_expsyms_cmds= ++ ++ case $host_os in ++ cygwin* | mingw* | pw32* | cegcc*) ++ # FIXME: the MSVC++ port hasn't been tested in a loooong time ++ # When not using gcc, we currently assume that we are using ++ # Microsoft Visual C++. ++ if test "$GCC" != yes; then ++ with_gnu_ld=no ++ fi ++ ;; ++ interix*) ++ # we just hope/assume this is gcc and not c89 (= MSVC++) ++ with_gnu_ld=yes ++ ;; ++ openbsd*) ++ with_gnu_ld=no ++ ;; ++ esac ++ ++ ld_shlibs=yes ++ if test "$with_gnu_ld" = yes; then ++ # If archive_cmds runs LD, not CC, wlarc should be empty ++ wlarc='${wl}' ++ ++ # Set some defaults for GNU ld with shared library support. These ++ # are reset later if shared libraries are not supported. Putting them ++ # here allows them to be overridden if necessary. ++ runpath_var=LD_RUN_PATH ++ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' ++ export_dynamic_flag_spec='${wl}--export-dynamic' ++ # ancient GNU ld didn't support --whole-archive et. al. ++ if $LD --help 2>&1 | $GREP 'no-whole-archive' > /dev/null; then ++ whole_archive_flag_spec="$wlarc"'--whole-archive$convenience '"$wlarc"'--no-whole-archive' ++ else ++ whole_archive_flag_spec= ++ fi ++ supports_anon_versioning=no ++ case `$LD -v 2>&1` in ++ *\ [01].* | *\ 2.[0-9].* | *\ 2.10.*) ;; # catch versions < 2.11 ++ *\ 2.11.93.0.2\ *) supports_anon_versioning=yes ;; # RH7.3 ... ++ *\ 2.11.92.0.12\ *) supports_anon_versioning=yes ;; # Mandrake 8.2 ... ++ *\ 2.11.*) ;; # other 2.11 versions ++ *) supports_anon_versioning=yes ;; ++ esac ++ ++ # See if GNU ld supports shared libraries. ++ case $host_os in ++ aix[3-9]*) ++ # On AIX/PPC, the GNU linker is very broken ++ if test "$host_cpu" != ia64; then ++ ld_shlibs=no ++ cat <<_LT_EOF 1>&2 ++ ++*** Warning: the GNU linker, at least up to release 2.9.1, is reported ++*** to be unable to reliably create shared libraries on AIX. ++*** Therefore, libtool is disabling shared libraries support. If you ++*** really care for shared libraries, you may want to modify your PATH ++*** so that a non-GNU linker is found, and then restart. ++ ++_LT_EOF ++ fi ++ ;; ++ ++ amigaos*) ++ case $host_cpu in ++ powerpc) ++ # see comment about AmigaOS4 .so support ++ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' ++ archive_expsym_cmds='' ++ ;; ++ m68k) ++ archive_cmds='$RM $output_objdir/a2ixlibrary.data~$ECHO "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$ECHO "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$ECHO "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$ECHO "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)' ++ hardcode_libdir_flag_spec='-L$libdir' ++ hardcode_minus_L=yes ++ ;; ++ esac ++ ;; ++ ++ beos*) ++ if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then ++ allow_undefined_flag=unsupported ++ # Joseph Beckenbach says some releases of gcc ++ # support --undefined. This deserves some investigation. FIXME ++ archive_cmds='$CC -nostart $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' ++ else ++ ld_shlibs=no ++ fi ++ ;; ++ ++ cygwin* | mingw* | pw32* | cegcc*) ++ # _LT_TAGVAR(hardcode_libdir_flag_spec, ) is actually meaningless, ++ # as there is no search path for DLLs. ++ hardcode_libdir_flag_spec='-L$libdir' ++ allow_undefined_flag=unsupported ++ always_export_symbols=no ++ enable_shared_with_static_runtimes=yes ++ export_symbols_cmds='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[BCDGRS][ ]/s/.*[ ]\([^ ]*\)/\1 DATA/'\'' | $SED -e '\''/^[AITW][ ]/s/.*[ ]//'\'' | sort | uniq > $export_symbols' ++ ++ if $LD --help 2>&1 | $GREP 'auto-import' > /dev/null; then ++ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib' ++ # If the export-symbols file already is a .def file (1st line ++ # is EXPORTS), use it as is; otherwise, prepend... ++ archive_expsym_cmds='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then ++ cp $export_symbols $output_objdir/$soname.def; ++ else ++ echo EXPORTS > $output_objdir/$soname.def; ++ cat $export_symbols >> $output_objdir/$soname.def; ++ fi~ ++ $CC -shared $output_objdir/$soname.def $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib' ++ else ++ ld_shlibs=no ++ fi ++ ;; ++ ++ interix[3-9]*) ++ hardcode_direct=no ++ hardcode_shlibpath_var=no ++ hardcode_libdir_flag_spec='${wl}-rpath,$libdir' ++ export_dynamic_flag_spec='${wl}-E' ++ # Hack: On Interix 3.x, we cannot compile PIC because of a broken gcc. ++ # Instead, shared libraries are loaded at an image base (0x10000000 by ++ # default) and relocated if they conflict, which is a slow very memory ++ # consuming and fragmenting process. To avoid this, we pick a random, ++ # 256 KiB-aligned image base between 0x50000000 and 0x6FFC0000 at link ++ # time. Moving up from 0x10000000 also allows more sbrk(2) space. ++ archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib' ++ archive_expsym_cmds='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib' ++ ;; ++ ++ gnu* | linux* | tpf* | k*bsd*-gnu) ++ tmp_diet=no ++ if test "$host_os" = linux-dietlibc; then ++ case $cc_basename in ++ diet\ *) tmp_diet=yes;; # linux-dietlibc with static linking (!diet-dyn) ++ esac ++ fi ++ if $LD --help 2>&1 | $EGREP ': supported targets:.* elf' > /dev/null \ ++ && test "$tmp_diet" = no ++ then ++ tmp_addflag= ++ tmp_sharedflag='-shared' ++ case $cc_basename,$host_cpu in ++ pgcc*) # Portland Group C compiler ++ whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' ++ tmp_addflag=' $pic_flag' ++ ;; ++ pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers ++ whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' ++ tmp_addflag=' $pic_flag -Mnomain' ;; ++ ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64 ++ tmp_addflag=' -i_dynamic' ;; ++ efc*,ia64* | ifort*,ia64*) # Intel Fortran compiler on ia64 ++ tmp_addflag=' -i_dynamic -nofor_main' ;; ++ ifc* | ifort*) # Intel Fortran compiler ++ tmp_addflag=' -nofor_main' ;; ++ lf95*) # Lahey Fortran 8.1 ++ whole_archive_flag_spec= ++ tmp_sharedflag='--shared' ;; ++ xl[cC]*) # IBM XL C 8.0 on PPC (deal with xlf below) ++ tmp_sharedflag='-qmkshrobj' ++ tmp_addflag= ;; ++ esac ++ case `$CC -V 2>&1 | sed 5q` in ++ *Sun\ C*) # Sun C 5.9 ++ whole_archive_flag_spec='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive' ++ compiler_needs_object=yes ++ tmp_sharedflag='-G' ;; ++ *Sun\ F*) # Sun Fortran 8.3 ++ tmp_sharedflag='-G' ;; ++ esac ++ archive_cmds='$CC '"$tmp_sharedflag""$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' ++ ++ if test "x$supports_anon_versioning" = xyes; then ++ archive_expsym_cmds='echo "{ global:" > $output_objdir/$libname.ver~ ++ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~ ++ echo "local: *; };" >> $output_objdir/$libname.ver~ ++ $CC '"$tmp_sharedflag""$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-version-script ${wl}$output_objdir/$libname.ver -o $lib' ++ fi ++ ++ case $cc_basename in ++ xlf*) ++ # IBM XL Fortran 10.1 on PPC cannot create shared libs itself ++ whole_archive_flag_spec='--whole-archive$convenience --no-whole-archive' ++ hardcode_libdir_flag_spec= ++ hardcode_libdir_flag_spec_ld='-rpath $libdir' ++ archive_cmds='$LD -shared $libobjs $deplibs $compiler_flags -soname $soname -o $lib' ++ if test "x$supports_anon_versioning" = xyes; then ++ archive_expsym_cmds='echo "{ global:" > $output_objdir/$libname.ver~ ++ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~ ++ echo "local: *; };" >> $output_objdir/$libname.ver~ ++ $LD -shared $libobjs $deplibs $compiler_flags -soname $soname -version-script $output_objdir/$libname.ver -o $lib' ++ fi ++ ;; ++ esac ++ else ++ ld_shlibs=no ++ fi ++ ;; ++ ++ netbsd*) ++ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then ++ archive_cmds='$LD -Bshareable $libobjs $deplibs $linker_flags -o $lib' ++ wlarc= ++ else ++ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' ++ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' ++ fi ++ ;; ++ ++ solaris*) ++ if $LD -v 2>&1 | $GREP 'BFD 2\.8' > /dev/null; then ++ ld_shlibs=no ++ cat <<_LT_EOF 1>&2 ++ ++*** Warning: The releases 2.8.* of the GNU linker cannot reliably ++*** create shared libraries on Solaris systems. Therefore, libtool ++*** is disabling shared libraries support. We urge you to upgrade GNU ++*** binutils to release 2.9.1 or newer. Another option is to modify ++*** your PATH or compiler configuration so that the native linker is ++*** used, and then restart. ++ ++_LT_EOF ++ elif $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then ++ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' ++ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' ++ else ++ ld_shlibs=no ++ fi ++ ;; ++ ++ sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*) ++ case `$LD -v 2>&1` in ++ *\ [01].* | *\ 2.[0-9].* | *\ 2.1[0-5].*) ++ ld_shlibs=no ++ cat <<_LT_EOF 1>&2 ++ ++*** Warning: Releases of the GNU linker prior to 2.16.91.0.3 can not ++*** reliably create shared libraries on SCO systems. Therefore, libtool ++*** is disabling shared libraries support. We urge you to upgrade GNU ++*** binutils to release 2.16.91.0.3 or newer. Another option is to modify ++*** your PATH or compiler configuration so that the native linker is ++*** used, and then restart. ++ ++_LT_EOF ++ ;; ++ *) ++ # For security reasons, it is highly recommended that you always ++ # use absolute paths for naming shared libraries, and exclude the ++ # DT_RUNPATH tag from executables and libraries. But doing so ++ # requires that you compile everything twice, which is a pain. ++ if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then ++ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' ++ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' ++ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' ++ else ++ ld_shlibs=no ++ fi ++ ;; ++ esac ++ ;; ++ ++ sunos4*) ++ archive_cmds='$LD -assert pure-text -Bshareable -o $lib $libobjs $deplibs $linker_flags' ++ wlarc= ++ hardcode_direct=yes ++ hardcode_shlibpath_var=no ++ ;; ++ ++ *) ++ if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then ++ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' ++ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib' ++ else ++ ld_shlibs=no ++ fi ++ ;; ++ esac ++ ++ if test "$ld_shlibs" = no; then ++ runpath_var= ++ hardcode_libdir_flag_spec= ++ export_dynamic_flag_spec= ++ whole_archive_flag_spec= ++ fi ++ else ++ # PORTME fill in a description of your system's linker (not GNU ld) ++ case $host_os in ++ aix3*) ++ allow_undefined_flag=unsupported ++ always_export_symbols=yes ++ archive_expsym_cmds='$LD -o $output_objdir/$soname $libobjs $deplibs $linker_flags -bE:$export_symbols -T512 -H512 -bM:SRE~$AR $AR_FLAGS $lib $output_objdir/$soname' ++ # Note: this linker hardcodes the directories in LIBPATH if there ++ # are no directories specified by -L. ++ hardcode_minus_L=yes ++ if test "$GCC" = yes && test -z "$lt_prog_compiler_static"; then ++ # Neither direct hardcoding nor static linking is supported with a ++ # broken collect2. ++ hardcode_direct=unsupported ++ fi ++ ;; ++ ++ aix[4-9]*) ++ if test "$host_cpu" = ia64; then ++ # On IA64, the linker does run time linking by default, so we don't ++ # have to do anything special. ++ aix_use_runtimelinking=no ++ exp_sym_flag='-Bexport' ++ no_entry_flag="" ++ else ++ # If we're using GNU nm, then we don't want the "-C" option. ++ # -C means demangle to AIX nm, but means don't demangle with GNU nm ++ if $NM -V 2>&1 | $GREP 'GNU' > /dev/null; then ++ export_symbols_cmds='$NM -Bpg $libobjs $convenience | awk '\''{ if (((\$ 2 == "T") || (\$ 2 == "D") || (\$ 2 == "B")) && (substr(\$ 3,1,1) != ".")) { print \$ 3 } }'\'' | sort -u > $export_symbols' ++ else ++ export_symbols_cmds='$NM -BCpg $libobjs $convenience | awk '\''{ if (((\$ 2 == "T") || (\$ 2 == "D") || (\$ 2 == "B")) && (substr(\$ 3,1,1) != ".")) { print \$ 3 } }'\'' | sort -u > $export_symbols' ++ fi ++ aix_use_runtimelinking=no ++ ++ # Test if we are trying to use run time linking or normal ++ # AIX style linking. If -brtl is somewhere in LDFLAGS, we ++ # need to do runtime linking. ++ case $host_os in aix4.[23]|aix4.[23].*|aix[5-9]*) ++ for ld_flag in $LDFLAGS; do ++ if (test $ld_flag = "-brtl" || test $ld_flag = "-Wl,-brtl"); then ++ aix_use_runtimelinking=yes ++ break ++ fi ++ done ++ ;; ++ esac ++ ++ exp_sym_flag='-bexport' ++ no_entry_flag='-bnoentry' ++ fi ++ ++ # When large executables or shared objects are built, AIX ld can ++ # have problems creating the table of contents. If linking a library ++ # or program results in "error TOC overflow" add -mminimal-toc to ++ # CXXFLAGS/CFLAGS for g++/gcc. In the cases where that is not ++ # enough to fix the problem, add -Wl,-bbigtoc to LDFLAGS. ++ ++ archive_cmds='' ++ hardcode_direct=yes ++ hardcode_direct_absolute=yes ++ hardcode_libdir_separator=':' ++ link_all_deplibs=yes ++ file_list_spec='${wl}-f,' ++ ++ if test "$GCC" = yes; then ++ case $host_os in aix4.[012]|aix4.[012].*) ++ # We only want to do this on AIX 4.2 and lower, the check ++ # below for broken collect2 doesn't work under 4.3+ ++ collect2name=`${CC} -print-prog-name=collect2` ++ if test -f "$collect2name" && ++ strings "$collect2name" | $GREP resolve_lib_name >/dev/null ++ then ++ # We have reworked collect2 ++ : ++ else ++ # We have old collect2 ++ hardcode_direct=unsupported ++ # It fails to find uninstalled libraries when the uninstalled ++ # path is not listed in the libpath. Setting hardcode_minus_L ++ # to unsupported forces relinking ++ hardcode_minus_L=yes ++ hardcode_libdir_flag_spec='-L$libdir' ++ hardcode_libdir_separator= ++ fi ++ ;; ++ esac ++ shared_flag='-shared' ++ if test "$aix_use_runtimelinking" = yes; then ++ shared_flag="$shared_flag "'${wl}-G' ++ fi ++ else ++ # not using gcc ++ if test "$host_cpu" = ia64; then ++ # VisualAge C++, Version 5.5 for AIX 5L for IA-64, Beta 3 Release ++ # chokes on -Wl,-G. The following line is correct: ++ shared_flag='-G' ++ else ++ if test "$aix_use_runtimelinking" = yes; then ++ shared_flag='${wl}-G' ++ else ++ shared_flag='${wl}-bM:SRE' ++ fi ++ fi ++ fi ++ ++ export_dynamic_flag_spec='${wl}-bexpall' ++ # It seems that -bexpall does not export symbols beginning with ++ # underscore (_), so it is better to generate a list of symbols to export. ++ always_export_symbols=yes ++ if test "$aix_use_runtimelinking" = yes; then ++ # Warning - without using the other runtime loading flags (-brtl), ++ # -berok will link without error, but may produce a broken library. ++ allow_undefined_flag='-berok' ++ # Determine the default libpath from the value encoded in an ++ # empty executable. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ++lt_aix_libpath_sed=' ++ /Import File Strings/,/^$/ { ++ /^0/ { ++ s/^0 *\(.*\)$/\1/ ++ p ++ } ++ }' ++aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"` ++# Check for a 64-bit object if we didn't find anything. ++if test -z "$aix_libpath"; then ++ aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"` ++fi ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi ++ ++ hardcode_libdir_flag_spec='${wl}-blibpath:$libdir:'"$aix_libpath" ++ archive_expsym_cmds='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then $ECHO "X${wl}${allow_undefined_flag}" | $Xsed; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag" ++ else ++ if test "$host_cpu" = ia64; then ++ hardcode_libdir_flag_spec='${wl}-R $libdir:/usr/lib:/lib' ++ allow_undefined_flag="-z nodefs" ++ archive_expsym_cmds="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags ${wl}${allow_undefined_flag} '"\${wl}$exp_sym_flag:\$export_symbols" ++ else ++ # Determine the default libpath from the value encoded in an ++ # empty executable. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ++lt_aix_libpath_sed=' ++ /Import File Strings/,/^$/ { ++ /^0/ { ++ s/^0 *\(.*\)$/\1/ ++ p ++ } ++ }' ++aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"` ++# Check for a 64-bit object if we didn't find anything. ++if test -z "$aix_libpath"; then ++ aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"` ++fi ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi ++ ++ hardcode_libdir_flag_spec='${wl}-blibpath:$libdir:'"$aix_libpath" ++ # Warning - without using the other run time loading flags, ++ # -berok will link without error, but may produce a broken library. ++ no_undefined_flag=' ${wl}-bernotok' ++ allow_undefined_flag=' ${wl}-berok' ++ # Exported symbols can be pulled into shared objects from archives ++ whole_archive_flag_spec='$convenience' ++ archive_cmds_need_lc=yes ++ # This is similar to how AIX traditionally builds its shared libraries. ++ archive_expsym_cmds="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs ${wl}-bnoentry $compiler_flags ${wl}-bE:$export_symbols${allow_undefined_flag}~$AR $AR_FLAGS $output_objdir/$libname$release.a $output_objdir/$soname' ++ fi ++ fi ++ ;; ++ ++ amigaos*) ++ case $host_cpu in ++ powerpc) ++ # see comment about AmigaOS4 .so support ++ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib' ++ archive_expsym_cmds='' ++ ;; ++ m68k) ++ archive_cmds='$RM $output_objdir/a2ixlibrary.data~$ECHO "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$ECHO "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$ECHO "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$ECHO "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)' ++ hardcode_libdir_flag_spec='-L$libdir' ++ hardcode_minus_L=yes ++ ;; ++ esac ++ ;; ++ ++ bsdi[45]*) ++ export_dynamic_flag_spec=-rdynamic ++ ;; ++ ++ cygwin* | mingw* | pw32* | cegcc*) ++ # When not using gcc, we currently assume that we are using ++ # Microsoft Visual C++. ++ # hardcode_libdir_flag_spec is actually meaningless, as there is ++ # no search path for DLLs. ++ hardcode_libdir_flag_spec=' ' ++ allow_undefined_flag=unsupported ++ # Tell ltmain to make .lib files, not .a files. ++ libext=lib ++ # Tell ltmain to make .dll files, not .so files. ++ shrext_cmds=".dll" ++ # FIXME: Setting linknames here is a bad hack. ++ archive_cmds='$CC -o $lib $libobjs $compiler_flags `$ECHO "X$deplibs" | $Xsed -e '\''s/ -lc$//'\''` -link -dll~linknames=' ++ # The linker will automatically build a .lib file if we build a DLL. ++ old_archive_from_new_cmds='true' ++ # FIXME: Should let the user specify the lib program. ++ old_archive_cmds='lib -OUT:$oldlib$oldobjs$old_deplibs' ++ fix_srcfile_path='`cygpath -w "$srcfile"`' ++ enable_shared_with_static_runtimes=yes ++ ;; ++ ++ darwin* | rhapsody*) ++ ++ ++ archive_cmds_need_lc=no ++ hardcode_direct=no ++ hardcode_automatic=yes ++ hardcode_shlibpath_var=unsupported ++ whole_archive_flag_spec='' ++ link_all_deplibs=yes ++ allow_undefined_flag="$_lt_dar_allow_undefined" ++ case $cc_basename in ++ ifort*) _lt_dar_can_shared=yes ;; ++ *) _lt_dar_can_shared=$GCC ;; ++ esac ++ if test "$_lt_dar_can_shared" = "yes"; then ++ output_verbose_link_cmd=echo ++ archive_cmds="\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring $_lt_dar_single_mod${_lt_dsymutil}" ++ module_cmds="\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dsymutil}" ++ archive_expsym_cmds="sed 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring ${_lt_dar_single_mod}${_lt_dar_export_syms}${_lt_dsymutil}" ++ module_expsym_cmds="sed -e 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dar_export_syms}${_lt_dsymutil}" ++ ++ else ++ ld_shlibs=no ++ fi ++ ++ ;; ++ ++ dgux*) ++ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' ++ hardcode_libdir_flag_spec='-L$libdir' ++ hardcode_shlibpath_var=no ++ ;; ++ ++ freebsd1*) ++ ld_shlibs=no ++ ;; ++ ++ # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor ++ # support. Future versions do this automatically, but an explicit c++rt0.o ++ # does not break anything, and helps significantly (at the cost of a little ++ # extra space). ++ freebsd2.2*) ++ archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags /usr/lib/c++rt0.o' ++ hardcode_libdir_flag_spec='-R$libdir' ++ hardcode_direct=yes ++ hardcode_shlibpath_var=no ++ ;; ++ ++ # Unfortunately, older versions of FreeBSD 2 do not have this feature. ++ freebsd2*) ++ archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' ++ hardcode_direct=yes ++ hardcode_minus_L=yes ++ hardcode_shlibpath_var=no ++ ;; ++ ++ # FreeBSD 3 and greater uses gcc -shared to do shared libraries. ++ freebsd* | dragonfly*) ++ archive_cmds='$CC -shared -o $lib $libobjs $deplibs $compiler_flags' ++ hardcode_libdir_flag_spec='-R$libdir' ++ hardcode_direct=yes ++ hardcode_shlibpath_var=no ++ ;; ++ ++ hpux9*) ++ if test "$GCC" = yes; then ++ archive_cmds='$RM $output_objdir/$soname~$CC -shared -fPIC ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $libobjs $deplibs $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' ++ else ++ archive_cmds='$RM $output_objdir/$soname~$LD -b +b $install_libdir -o $output_objdir/$soname $libobjs $deplibs $linker_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib' ++ fi ++ hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' ++ hardcode_libdir_separator=: ++ hardcode_direct=yes ++ ++ # hardcode_minus_L: Not really in the search PATH, ++ # but as the default location of the library. ++ hardcode_minus_L=yes ++ export_dynamic_flag_spec='${wl}-E' ++ ;; ++ ++ hpux10*) ++ if test "$GCC" = yes -a "$with_gnu_ld" = no; then ++ archive_cmds='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ++ else ++ archive_cmds='$LD -b +h $soname +b $install_libdir -o $lib $libobjs $deplibs $linker_flags' ++ fi ++ if test "$with_gnu_ld" = no; then ++ hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' ++ hardcode_libdir_flag_spec_ld='+b $libdir' ++ hardcode_libdir_separator=: ++ hardcode_direct=yes ++ hardcode_direct_absolute=yes ++ export_dynamic_flag_spec='${wl}-E' ++ # hardcode_minus_L: Not really in the search PATH, ++ # but as the default location of the library. ++ hardcode_minus_L=yes ++ fi ++ ;; ++ ++ hpux11*) ++ if test "$GCC" = yes -a "$with_gnu_ld" = no; then ++ case $host_cpu in ++ hppa*64*) ++ archive_cmds='$CC -shared ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ++ ;; ++ ia64*) ++ archive_cmds='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ++ ;; ++ *) ++ archive_cmds='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ++ ;; ++ esac ++ else ++ case $host_cpu in ++ hppa*64*) ++ archive_cmds='$CC -b ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ++ ;; ++ ia64*) ++ archive_cmds='$CC -b ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags' ++ ;; ++ *) ++ archive_cmds='$CC -b ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags' ++ ;; ++ esac ++ fi ++ if test "$with_gnu_ld" = no; then ++ hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir' ++ hardcode_libdir_separator=: ++ ++ case $host_cpu in ++ hppa*64*|ia64*) ++ hardcode_direct=no ++ hardcode_shlibpath_var=no ++ ;; ++ *) ++ hardcode_direct=yes ++ hardcode_direct_absolute=yes ++ export_dynamic_flag_spec='${wl}-E' ++ ++ # hardcode_minus_L: Not really in the search PATH, ++ # but as the default location of the library. ++ hardcode_minus_L=yes ++ ;; ++ esac ++ fi ++ ;; ++ ++ irix5* | irix6* | nonstopux*) ++ if test "$GCC" = yes; then ++ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' ++ # Try to use the -exported_symbol ld option, if it does not ++ # work, assume that -exports_file does not work either and ++ # implicitly export all symbols. ++ save_LDFLAGS="$LDFLAGS" ++ LDFLAGS="$LDFLAGS -shared ${wl}-exported_symbol ${wl}foo ${wl}-update_registry ${wl}/dev/null" ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++int foo(void) {} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations ${wl}-exports_file ${wl}$export_symbols -o $lib' ++ ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++ LDFLAGS="$save_LDFLAGS" ++ else ++ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib' ++ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -exports_file $export_symbols -o $lib' ++ fi ++ archive_cmds_need_lc='no' ++ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' ++ hardcode_libdir_separator=: ++ inherit_rpath=yes ++ link_all_deplibs=yes ++ ;; ++ ++ netbsd*) ++ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then ++ archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' # a.out ++ else ++ archive_cmds='$LD -shared -o $lib $libobjs $deplibs $linker_flags' # ELF ++ fi ++ hardcode_libdir_flag_spec='-R$libdir' ++ hardcode_direct=yes ++ hardcode_shlibpath_var=no ++ ;; ++ ++ newsos6) ++ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' ++ hardcode_direct=yes ++ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' ++ hardcode_libdir_separator=: ++ hardcode_shlibpath_var=no ++ ;; ++ ++ *nto* | *qnx*) ++ ;; ++ ++ openbsd*) ++ if test -f /usr/libexec/ld.so; then ++ hardcode_direct=yes ++ hardcode_shlibpath_var=no ++ hardcode_direct_absolute=yes ++ if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then ++ archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' ++ archive_expsym_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-retain-symbols-file,$export_symbols' ++ hardcode_libdir_flag_spec='${wl}-rpath,$libdir' ++ export_dynamic_flag_spec='${wl}-E' ++ else ++ case $host_os in ++ openbsd[01].* | openbsd2.[0-7] | openbsd2.[0-7].*) ++ archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' ++ hardcode_libdir_flag_spec='-R$libdir' ++ ;; ++ *) ++ archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags' ++ hardcode_libdir_flag_spec='${wl}-rpath,$libdir' ++ ;; ++ esac ++ fi ++ else ++ ld_shlibs=no ++ fi ++ ;; ++ ++ os2*) ++ hardcode_libdir_flag_spec='-L$libdir' ++ hardcode_minus_L=yes ++ allow_undefined_flag=unsupported ++ archive_cmds='$ECHO "LIBRARY $libname INITINSTANCE" > $output_objdir/$libname.def~$ECHO "DESCRIPTION \"$libname\"" >> $output_objdir/$libname.def~$ECHO DATA >> $output_objdir/$libname.def~$ECHO " SINGLE NONSHARED" >> $output_objdir/$libname.def~$ECHO EXPORTS >> $output_objdir/$libname.def~emxexp $libobjs >> $output_objdir/$libname.def~$CC -Zdll -Zcrtdll -o $lib $libobjs $deplibs $compiler_flags $output_objdir/$libname.def' ++ old_archive_from_new_cmds='emximp -o $output_objdir/$libname.a $output_objdir/$libname.def' ++ ;; ++ ++ osf3*) ++ if test "$GCC" = yes; then ++ allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*' ++ archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' ++ else ++ allow_undefined_flag=' -expect_unresolved \*' ++ archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib' ++ fi ++ archive_cmds_need_lc='no' ++ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' ++ hardcode_libdir_separator=: ++ ;; ++ ++ osf4* | osf5*) # as osf3* with the addition of -msym flag ++ if test "$GCC" = yes; then ++ allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*' ++ archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib' ++ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' ++ else ++ allow_undefined_flag=' -expect_unresolved \*' ++ archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -msym -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib' ++ archive_expsym_cmds='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; printf "%s\\n" "-hidden">> $lib.exp~ ++ $CC -shared${allow_undefined_flag} ${wl}-input ${wl}$lib.exp $compiler_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib~$RM $lib.exp' ++ ++ # Both c and cxx compiler support -rpath directly ++ hardcode_libdir_flag_spec='-rpath $libdir' ++ fi ++ archive_cmds_need_lc='no' ++ hardcode_libdir_separator=: ++ ;; ++ ++ solaris*) ++ no_undefined_flag=' -z defs' ++ if test "$GCC" = yes; then ++ wlarc='${wl}' ++ archive_cmds='$CC -shared ${wl}-z ${wl}text ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags' ++ archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~ ++ $CC -shared ${wl}-z ${wl}text ${wl}-M ${wl}$lib.exp ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags~$RM $lib.exp' ++ else ++ case `$CC -V 2>&1` in ++ *"Compilers 5.0"*) ++ wlarc='' ++ archive_cmds='$LD -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $linker_flags' ++ archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~ ++ $LD -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $linker_flags~$RM $lib.exp' ++ ;; ++ *) ++ wlarc='${wl}' ++ archive_cmds='$CC -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $compiler_flags' ++ archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~ ++ $CC -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $compiler_flags~$RM $lib.exp' ++ ;; ++ esac ++ fi ++ hardcode_libdir_flag_spec='-R$libdir' ++ hardcode_shlibpath_var=no ++ case $host_os in ++ solaris2.[0-5] | solaris2.[0-5].*) ;; ++ *) ++ # The compiler driver will combine and reorder linker options, ++ # but understands `-z linker_flag'. GCC discards it without `$wl', ++ # but is careful enough not to reorder. ++ # Supported since Solaris 2.6 (maybe 2.5.1?) ++ if test "$GCC" = yes; then ++ whole_archive_flag_spec='${wl}-z ${wl}allextract$convenience ${wl}-z ${wl}defaultextract' ++ else ++ whole_archive_flag_spec='-z allextract$convenience -z defaultextract' ++ fi ++ ;; ++ esac ++ link_all_deplibs=yes ++ ;; ++ ++ sunos4*) ++ if test "x$host_vendor" = xsequent; then ++ # Use $CC to link under sequent, because it throws in some extra .o ++ # files that make .init and .fini sections work. ++ archive_cmds='$CC -G ${wl}-h $soname -o $lib $libobjs $deplibs $compiler_flags' ++ else ++ archive_cmds='$LD -assert pure-text -Bstatic -o $lib $libobjs $deplibs $linker_flags' ++ fi ++ hardcode_libdir_flag_spec='-L$libdir' ++ hardcode_direct=yes ++ hardcode_minus_L=yes ++ hardcode_shlibpath_var=no ++ ;; ++ ++ sysv4) ++ case $host_vendor in ++ sni) ++ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' ++ hardcode_direct=yes # is this really true??? ++ ;; ++ siemens) ++ ## LD is ld it makes a PLAMLIB ++ ## CC just makes a GrossModule. ++ archive_cmds='$LD -G -o $lib $libobjs $deplibs $linker_flags' ++ reload_cmds='$CC -r -o $output$reload_objs' ++ hardcode_direct=no ++ ;; ++ motorola) ++ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' ++ hardcode_direct=no #Motorola manual says yes, but my tests say they lie ++ ;; ++ esac ++ runpath_var='LD_RUN_PATH' ++ hardcode_shlibpath_var=no ++ ;; ++ ++ sysv4.3*) ++ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' ++ hardcode_shlibpath_var=no ++ export_dynamic_flag_spec='-Bexport' ++ ;; ++ ++ sysv4*MP*) ++ if test -d /usr/nec; then ++ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' ++ hardcode_shlibpath_var=no ++ runpath_var=LD_RUN_PATH ++ hardcode_runpath_var=yes ++ ld_shlibs=yes ++ fi ++ ;; ++ ++ sysv4*uw2* | sysv5OpenUNIX* | sysv5UnixWare7.[01].[10]* | unixware7* | sco3.2v5.0.[024]*) ++ no_undefined_flag='${wl}-z,text' ++ archive_cmds_need_lc=no ++ hardcode_shlibpath_var=no ++ runpath_var='LD_RUN_PATH' ++ ++ if test "$GCC" = yes; then ++ archive_cmds='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' ++ archive_expsym_cmds='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' ++ else ++ archive_cmds='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' ++ archive_expsym_cmds='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' ++ fi ++ ;; ++ ++ sysv5* | sco3.2v5* | sco5v6*) ++ # Note: We can NOT use -z defs as we might desire, because we do not ++ # link with -lc, and that would cause any symbols used from libc to ++ # always be unresolved, which means just about no library would ++ # ever link correctly. If we're not using GNU ld we use -z text ++ # though, which does catch some bad symbols but isn't as heavy-handed ++ # as -z defs. ++ no_undefined_flag='${wl}-z,text' ++ allow_undefined_flag='${wl}-z,nodefs' ++ archive_cmds_need_lc=no ++ hardcode_shlibpath_var=no ++ hardcode_libdir_flag_spec='${wl}-R,$libdir' ++ hardcode_libdir_separator=':' ++ link_all_deplibs=yes ++ export_dynamic_flag_spec='${wl}-Bexport' ++ runpath_var='LD_RUN_PATH' ++ ++ if test "$GCC" = yes; then ++ archive_cmds='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' ++ archive_expsym_cmds='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' ++ else ++ archive_cmds='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' ++ archive_expsym_cmds='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags' ++ fi ++ ;; ++ ++ uts4*) ++ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags' ++ hardcode_libdir_flag_spec='-L$libdir' ++ hardcode_shlibpath_var=no ++ ;; ++ ++ *) ++ ld_shlibs=no ++ ;; ++ esac ++ ++ if test x$host_vendor = xsni; then ++ case $host in ++ sysv4 | sysv4.2uw2* | sysv4.3* | sysv5*) ++ export_dynamic_flag_spec='${wl}-Blargedynsym' ++ ;; ++ esac ++ fi ++ fi ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ld_shlibs" >&5 ++$as_echo "$ld_shlibs" >&6; } ++test "$ld_shlibs" = no && can_build_shared=no ++ ++with_gnu_ld=$with_gnu_ld ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++# ++# Do we need to explicitly link libc? ++# ++case "x$archive_cmds_need_lc" in ++x|xyes) ++ # Assume -lc should be added ++ archive_cmds_need_lc=yes ++ ++ if test "$enable_shared" = yes && test "$GCC" = yes; then ++ case $archive_cmds in ++ *'~'*) ++ # FIXME: we may have to deal with multi-command sequences. ++ ;; ++ '$CC '*) ++ # Test whether the compiler implicitly links with -lc since on some ++ # systems, -lgcc has to come before -lc. If gcc already passes -lc ++ # to ld, don't add -lc before -lgcc. ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether -lc should be explicitly linked in" >&5 ++$as_echo_n "checking whether -lc should be explicitly linked in... " >&6; } ++ $RM conftest* ++ echo "$lt_simple_compile_test_code" > conftest.$ac_ext ++ ++ if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_compile\""; } >&5 ++ (eval $ac_compile) 2>&5 ++ ac_status=$? ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; } 2>conftest.err; then ++ soname=conftest ++ lib=conftest ++ libobjs=conftest.$ac_objext ++ deplibs= ++ wl=$lt_prog_compiler_wl ++ pic_flag=$lt_prog_compiler_pic ++ compiler_flags=-v ++ linker_flags=-v ++ verstring= ++ output_objdir=. ++ libname=conftest ++ lt_save_allow_undefined_flag=$allow_undefined_flag ++ allow_undefined_flag= ++ if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$archive_cmds 2\>\&1 \| $GREP \" -lc \" \>/dev/null 2\>\&1\""; } >&5 ++ (eval $archive_cmds 2\>\&1 \| $GREP \" -lc \" \>/dev/null 2\>\&1) 2>&5 ++ ac_status=$? ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; } ++ then ++ archive_cmds_need_lc=no ++ else ++ archive_cmds_need_lc=yes ++ fi ++ allow_undefined_flag=$lt_save_allow_undefined_flag ++ else ++ cat conftest.err 1>&5 ++ fi ++ $RM conftest* ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $archive_cmds_need_lc" >&5 ++$as_echo "$archive_cmds_need_lc" >&6; } ++ ;; ++ esac ++ fi ++ ;; ++esac ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking dynamic linker characteristics" >&5 ++$as_echo_n "checking dynamic linker characteristics... " >&6; } ++ ++if test "$GCC" = yes; then ++ case $host_os in ++ darwin*) lt_awk_arg="/^libraries:/,/LR/" ;; ++ *) lt_awk_arg="/^libraries:/" ;; ++ esac ++ lt_search_path_spec=`$CC -print-search-dirs | awk $lt_awk_arg | $SED -e "s/^libraries://" -e "s,=/,/,g"` ++ if $ECHO "$lt_search_path_spec" | $GREP ';' >/dev/null ; then ++ # if the path contains ";" then we assume it to be the separator ++ # otherwise default to the standard path separator (i.e. ":") - it is ++ # assumed that no part of a normal pathname contains ";" but that should ++ # okay in the real world where ";" in dirpaths is itself problematic. ++ lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED -e 's/;/ /g'` ++ else ++ lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"` ++ fi ++ # Ok, now we have the path, separated by spaces, we can step through it ++ # and add multilib dir if necessary. ++ lt_tmp_lt_search_path_spec= ++ lt_multi_os_dir=`$CC $CPPFLAGS $CFLAGS $LDFLAGS -print-multi-os-directory 2>/dev/null` ++ for lt_sys_path in $lt_search_path_spec; do ++ if test -d "$lt_sys_path/$lt_multi_os_dir"; then ++ lt_tmp_lt_search_path_spec="$lt_tmp_lt_search_path_spec $lt_sys_path/$lt_multi_os_dir" ++ else ++ test -d "$lt_sys_path" && \ ++ lt_tmp_lt_search_path_spec="$lt_tmp_lt_search_path_spec $lt_sys_path" ++ fi ++ done ++ lt_search_path_spec=`$ECHO $lt_tmp_lt_search_path_spec | awk ' ++BEGIN {RS=" "; FS="/|\n";} { ++ lt_foo=""; ++ lt_count=0; ++ for (lt_i = NF; lt_i > 0; lt_i--) { ++ if ($lt_i != "" && $lt_i != ".") { ++ if ($lt_i == "..") { ++ lt_count++; ++ } else { ++ if (lt_count == 0) { ++ lt_foo="/" $lt_i lt_foo; ++ } else { ++ lt_count--; ++ } ++ } ++ } ++ } ++ if (lt_foo != "") { lt_freq[lt_foo]++; } ++ if (lt_freq[lt_foo] == 1) { print lt_foo; } ++}'` ++ sys_lib_search_path_spec=`$ECHO $lt_search_path_spec` ++else ++ sys_lib_search_path_spec="/lib /usr/lib /usr/local/lib" ++fi ++library_names_spec= ++libname_spec='lib$name' ++soname_spec= ++shrext_cmds=".so" ++postinstall_cmds= ++postuninstall_cmds= ++finish_cmds= ++finish_eval= ++shlibpath_var= ++shlibpath_overrides_runpath=unknown ++version_type=none ++dynamic_linker="$host_os ld.so" ++sys_lib_dlsearch_path_spec="/lib /usr/lib" ++need_lib_prefix=unknown ++hardcode_into_libs=no ++ ++# when you set need_version to no, make sure it does not cause -set_version ++# flags to be left without arguments ++need_version=unknown ++ ++case $host_os in ++aix3*) ++ version_type=linux ++ library_names_spec='${libname}${release}${shared_ext}$versuffix $libname.a' ++ shlibpath_var=LIBPATH ++ ++ # AIX 3 has no versioning support, so we append a major version to the name. ++ soname_spec='${libname}${release}${shared_ext}$major' ++ ;; ++ ++aix[4-9]*) ++ version_type=linux ++ need_lib_prefix=no ++ need_version=no ++ hardcode_into_libs=yes ++ if test "$host_cpu" = ia64; then ++ # AIX 5 supports IA64 ++ library_names_spec='${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext}$versuffix $libname${shared_ext}' ++ shlibpath_var=LD_LIBRARY_PATH ++ else ++ # With GCC up to 2.95.x, collect2 would create an import file ++ # for dependence libraries. The import file would start with ++ # the line `#! .'. This would cause the generated library to ++ # depend on `.', always an invalid library. This was fixed in ++ # development snapshots of GCC prior to 3.0. ++ case $host_os in ++ aix4 | aix4.[01] | aix4.[01].*) ++ if { echo '#if __GNUC__ > 2 || (__GNUC__ == 2 && __GNUC_MINOR__ >= 97)' ++ echo ' yes ' ++ echo '#endif'; } | ${CC} -E - | $GREP yes > /dev/null; then ++ : ++ else ++ can_build_shared=no ++ fi ++ ;; ++ esac ++ # AIX (on Power*) has no versioning support, so currently we can not hardcode correct ++ # soname into executable. Probably we can add versioning support to ++ # collect2, so additional links can be useful in future. ++ if test "$aix_use_runtimelinking" = yes; then ++ # If using run time linking (on AIX 4.2 or later) use lib.so ++ # instead of lib.a to let people know that these are not ++ # typical AIX shared libraries. ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ else ++ # We preserve .a as extension for shared libraries through AIX4.2 ++ # and later when we are not doing run time linking. ++ library_names_spec='${libname}${release}.a $libname.a' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ fi ++ shlibpath_var=LIBPATH ++ fi ++ ;; ++ ++amigaos*) ++ case $host_cpu in ++ powerpc) ++ # Since July 2007 AmigaOS4 officially supports .so libraries. ++ # When compiling the executable, add -use-dynld -Lsobjs: to the compileline. ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ ;; ++ m68k) ++ library_names_spec='$libname.ixlibrary $libname.a' ++ # Create ${libname}_ixlibrary.a entries in /sys/libs. ++ finish_eval='for lib in `ls $libdir/*.ixlibrary 2>/dev/null`; do libname=`$ECHO "X$lib" | $Xsed -e '\''s%^.*/\([^/]*\)\.ixlibrary$%\1%'\''`; test $RM /sys/libs/${libname}_ixlibrary.a; $show "cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a"; cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a || exit 1; done' ++ ;; ++ esac ++ ;; ++ ++beos*) ++ library_names_spec='${libname}${shared_ext}' ++ dynamic_linker="$host_os ld.so" ++ shlibpath_var=LIBRARY_PATH ++ ;; ++ ++bsdi[45]*) ++ version_type=linux ++ need_version=no ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ finish_cmds='PATH="\$PATH:/sbin" ldconfig $libdir' ++ shlibpath_var=LD_LIBRARY_PATH ++ sys_lib_search_path_spec="/shlib /usr/lib /usr/X11/lib /usr/contrib/lib /lib /usr/local/lib" ++ sys_lib_dlsearch_path_spec="/shlib /usr/lib /usr/local/lib" ++ # the default ld.so.conf also contains /usr/contrib/lib and ++ # /usr/X11R6/lib (/usr/X11 is a link to /usr/X11R6), but let us allow ++ # libtool to hard-code these into programs ++ ;; ++ ++cygwin* | mingw* | pw32* | cegcc*) ++ version_type=windows ++ shrext_cmds=".dll" ++ need_version=no ++ need_lib_prefix=no ++ ++ case $GCC,$host_os in ++ yes,cygwin* | yes,mingw* | yes,pw32* | yes,cegcc*) ++ library_names_spec='$libname.dll.a' ++ # DLL is installed to $(libdir)/../bin by postinstall_cmds ++ postinstall_cmds='base_file=`basename \${file}`~ ++ dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~ ++ dldir=$destdir/`dirname \$dlpath`~ ++ test -d \$dldir || mkdir -p \$dldir~ ++ $install_prog $dir/$dlname \$dldir/$dlname~ ++ chmod a+x \$dldir/$dlname~ ++ if test -n '\''$stripme'\'' && test -n '\''$striplib'\''; then ++ eval '\''$striplib \$dldir/$dlname'\'' || exit \$?; ++ fi' ++ postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~ ++ dlpath=$dir/\$dldll~ ++ $RM \$dlpath' ++ shlibpath_overrides_runpath=yes ++ ++ case $host_os in ++ cygwin*) ++ # Cygwin DLLs use 'cyg' prefix rather than 'lib' ++ soname_spec='`echo ${libname} | sed -e 's/^lib/cyg/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}' ++ sys_lib_search_path_spec="/usr/lib /lib/w32api /lib /usr/local/lib" ++ ;; ++ mingw* | cegcc*) ++ # MinGW DLLs use traditional 'lib' prefix ++ soname_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}' ++ sys_lib_search_path_spec=`$CC -print-search-dirs | $GREP "^libraries:" | $SED -e "s/^libraries://" -e "s,=/,/,g"` ++ if $ECHO "$sys_lib_search_path_spec" | $GREP ';[c-zC-Z]:/' >/dev/null; then ++ # It is most probably a Windows format PATH printed by ++ # mingw gcc, but we are running on Cygwin. Gcc prints its search ++ # path with ; separators, and with drive letters. We can handle the ++ # drive letters (cygwin fileutils understands them), so leave them, ++ # especially as we might pass files found there to a mingw objdump, ++ # which wouldn't understand a cygwinified path. Ahh. ++ sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e 's/;/ /g'` ++ else ++ sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"` ++ fi ++ ;; ++ pw32*) ++ # pw32 DLLs use 'pw' prefix rather than 'lib' ++ library_names_spec='`echo ${libname} | sed -e 's/^lib/pw/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}' ++ ;; ++ esac ++ ;; ++ ++ *) ++ library_names_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext} $libname.lib' ++ ;; ++ esac ++ dynamic_linker='Win32 ld.exe' ++ # FIXME: first we should search . and the directory the executable is in ++ shlibpath_var=PATH ++ ;; ++ ++darwin* | rhapsody*) ++ dynamic_linker="$host_os dyld" ++ version_type=darwin ++ need_lib_prefix=no ++ need_version=no ++ library_names_spec='${libname}${release}${major}$shared_ext ${libname}$shared_ext' ++ soname_spec='${libname}${release}${major}$shared_ext' ++ shlibpath_overrides_runpath=yes ++ shlibpath_var=DYLD_LIBRARY_PATH ++ shrext_cmds='`test .$module = .yes && echo .so || echo .dylib`' ++ ++ sys_lib_search_path_spec="$sys_lib_search_path_spec /usr/local/lib" ++ sys_lib_dlsearch_path_spec='/usr/local/lib /lib /usr/lib' ++ ;; ++ ++dgux*) ++ version_type=linux ++ need_lib_prefix=no ++ need_version=no ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname$shared_ext' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ shlibpath_var=LD_LIBRARY_PATH ++ ;; ++ ++freebsd1*) ++ dynamic_linker=no ++ ;; ++ ++freebsd* | dragonfly*) ++ # DragonFly does not have aout. When/if they implement a new ++ # versioning mechanism, adjust this. ++ if test -x /usr/bin/objformat; then ++ objformat=`/usr/bin/objformat` ++ else ++ case $host_os in ++ freebsd[123]*) objformat=aout ;; ++ *) objformat=elf ;; ++ esac ++ fi ++ version_type=freebsd-$objformat ++ case $version_type in ++ freebsd-elf*) ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext} $libname${shared_ext}' ++ need_version=no ++ need_lib_prefix=no ++ ;; ++ freebsd-*) ++ library_names_spec='${libname}${release}${shared_ext}$versuffix $libname${shared_ext}$versuffix' ++ need_version=yes ++ ;; ++ esac ++ shlibpath_var=LD_LIBRARY_PATH ++ case $host_os in ++ freebsd2*) ++ shlibpath_overrides_runpath=yes ++ ;; ++ freebsd3.[01]* | freebsdelf3.[01]*) ++ shlibpath_overrides_runpath=yes ++ hardcode_into_libs=yes ++ ;; ++ freebsd3.[2-9]* | freebsdelf3.[2-9]* | \ ++ freebsd4.[0-5] | freebsdelf4.[0-5] | freebsd4.1.1 | freebsdelf4.1.1) ++ shlibpath_overrides_runpath=no ++ hardcode_into_libs=yes ++ ;; ++ *) # from 4.6 on, and DragonFly ++ shlibpath_overrides_runpath=yes ++ hardcode_into_libs=yes ++ ;; ++ esac ++ ;; ++ ++gnu*) ++ version_type=linux ++ need_lib_prefix=no ++ need_version=no ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ shlibpath_var=LD_LIBRARY_PATH ++ hardcode_into_libs=yes ++ ;; ++ ++hpux9* | hpux10* | hpux11*) ++ # Give a soname corresponding to the major version so that dld.sl refuses to ++ # link against other versions. ++ version_type=sunos ++ need_lib_prefix=no ++ need_version=no ++ case $host_cpu in ++ ia64*) ++ shrext_cmds='.so' ++ hardcode_into_libs=yes ++ dynamic_linker="$host_os dld.so" ++ shlibpath_var=LD_LIBRARY_PATH ++ shlibpath_overrides_runpath=yes # Unless +noenvvar is specified. ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ if test "X$HPUX_IA64_MODE" = X32; then ++ sys_lib_search_path_spec="/usr/lib/hpux32 /usr/local/lib/hpux32 /usr/local/lib" ++ else ++ sys_lib_search_path_spec="/usr/lib/hpux64 /usr/local/lib/hpux64" ++ fi ++ sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec ++ ;; ++ hppa*64*) ++ shrext_cmds='.sl' ++ hardcode_into_libs=yes ++ dynamic_linker="$host_os dld.sl" ++ shlibpath_var=LD_LIBRARY_PATH # How should we handle SHLIB_PATH ++ shlibpath_overrides_runpath=yes # Unless +noenvvar is specified. ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ sys_lib_search_path_spec="/usr/lib/pa20_64 /usr/ccs/lib/pa20_64" ++ sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec ++ ;; ++ *) ++ shrext_cmds='.sl' ++ dynamic_linker="$host_os dld.sl" ++ shlibpath_var=SHLIB_PATH ++ shlibpath_overrides_runpath=no # +s is required to enable SHLIB_PATH ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ ;; ++ esac ++ # HP-UX runs *really* slowly unless shared libraries are mode 555. ++ postinstall_cmds='chmod 555 $lib' ++ ;; ++ ++interix[3-9]*) ++ version_type=linux ++ need_lib_prefix=no ++ need_version=no ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ dynamic_linker='Interix 3.x ld.so.1 (PE, like ELF)' ++ shlibpath_var=LD_LIBRARY_PATH ++ shlibpath_overrides_runpath=no ++ hardcode_into_libs=yes ++ ;; ++ ++irix5* | irix6* | nonstopux*) ++ case $host_os in ++ nonstopux*) version_type=nonstopux ;; ++ *) ++ if test "$lt_cv_prog_gnu_ld" = yes; then ++ version_type=linux ++ else ++ version_type=irix ++ fi ;; ++ esac ++ need_lib_prefix=no ++ need_version=no ++ soname_spec='${libname}${release}${shared_ext}$major' ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext} $libname${shared_ext}' ++ case $host_os in ++ irix5* | nonstopux*) ++ libsuff= shlibsuff= ++ ;; ++ *) ++ case $LD in # libtool.m4 will add one of these switches to LD ++ *-32|*"-32 "|*-melf32bsmip|*"-melf32bsmip ") ++ libsuff= shlibsuff= libmagic=32-bit;; ++ *-n32|*"-n32 "|*-melf32bmipn32|*"-melf32bmipn32 ") ++ libsuff=32 shlibsuff=N32 libmagic=N32;; ++ *-64|*"-64 "|*-melf64bmip|*"-melf64bmip ") ++ libsuff=64 shlibsuff=64 libmagic=64-bit;; ++ *) libsuff= shlibsuff= libmagic=never-match;; ++ esac ++ ;; ++ esac ++ shlibpath_var=LD_LIBRARY${shlibsuff}_PATH ++ shlibpath_overrides_runpath=no ++ sys_lib_search_path_spec="/usr/lib${libsuff} /lib${libsuff} /usr/local/lib${libsuff}" ++ sys_lib_dlsearch_path_spec="/usr/lib${libsuff} /lib${libsuff}" ++ hardcode_into_libs=yes ++ ;; ++ ++# No shared lib support for Linux oldld, aout, or coff. ++linux*oldld* | linux*aout* | linux*coff*) ++ dynamic_linker=no ++ ;; ++ ++# This must be Linux ELF. ++linux* | k*bsd*-gnu) ++ version_type=linux ++ need_lib_prefix=no ++ need_version=no ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ finish_cmds='PATH="\$PATH:/sbin" ldconfig -n $libdir' ++ shlibpath_var=LD_LIBRARY_PATH ++ shlibpath_overrides_runpath=no ++ # Some binutils ld are patched to set DT_RUNPATH ++ save_LDFLAGS=$LDFLAGS ++ save_libdir=$libdir ++ eval "libdir=/foo; wl=\"$lt_prog_compiler_wl\"; \ ++ LDFLAGS=\"\$LDFLAGS $hardcode_libdir_flag_spec\"" ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ if ($OBJDUMP -p conftest$ac_exeext) 2>/dev/null | grep "RUNPATH.*$libdir" >/dev/null; then : ++ shlibpath_overrides_runpath=yes ++fi ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++ LDFLAGS=$save_LDFLAGS ++ libdir=$save_libdir ++ ++ # This implies no fast_install, which is unacceptable. ++ # Some rework will be needed to allow for fast_install ++ # before this can be enabled. ++ hardcode_into_libs=yes ++ ++ # Add ABI-specific directories to the system library path. ++ sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /lib /usr/lib" ++ ++ # Append ld.so.conf contents to the search path ++ if test -f /etc/ld.so.conf; then ++ lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '` ++ sys_lib_dlsearch_path_spec="$sys_lib_dlsearch_path_spec $lt_ld_extra" ++ fi ++ ++ # We used to test for /lib/ld.so.1 and disable shared libraries on ++ # powerpc, because MkLinux only supported shared libraries with the ++ # GNU dynamic linker. Since this was broken with cross compilers, ++ # most powerpc-linux boxes support dynamic linking these days and ++ # people can always --disable-shared, the test was removed, and we ++ # assume the GNU/Linux dynamic linker is in use. ++ dynamic_linker='GNU/Linux ld.so' ++ ;; ++ ++netbsd*) ++ version_type=sunos ++ need_lib_prefix=no ++ need_version=no ++ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' ++ finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir' ++ dynamic_linker='NetBSD (a.out) ld.so' ++ else ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ dynamic_linker='NetBSD ld.elf_so' ++ fi ++ shlibpath_var=LD_LIBRARY_PATH ++ shlibpath_overrides_runpath=yes ++ hardcode_into_libs=yes ++ ;; ++ ++newsos6) ++ version_type=linux ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ shlibpath_var=LD_LIBRARY_PATH ++ shlibpath_overrides_runpath=yes ++ ;; ++ ++*nto* | *qnx*) ++ version_type=qnx ++ need_lib_prefix=no ++ need_version=no ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ shlibpath_var=LD_LIBRARY_PATH ++ shlibpath_overrides_runpath=no ++ hardcode_into_libs=yes ++ dynamic_linker='ldqnx.so' ++ ;; ++ ++openbsd*) ++ version_type=sunos ++ sys_lib_dlsearch_path_spec="/usr/lib" ++ need_lib_prefix=no ++ # Some older versions of OpenBSD (3.3 at least) *do* need versioned libs. ++ case $host_os in ++ openbsd3.3 | openbsd3.3.*) need_version=yes ;; ++ *) need_version=no ;; ++ esac ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' ++ finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir' ++ shlibpath_var=LD_LIBRARY_PATH ++ if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then ++ case $host_os in ++ openbsd2.[89] | openbsd2.[89].*) ++ shlibpath_overrides_runpath=no ++ ;; ++ *) ++ shlibpath_overrides_runpath=yes ++ ;; ++ esac ++ else ++ shlibpath_overrides_runpath=yes ++ fi ++ ;; ++ ++os2*) ++ libname_spec='$name' ++ shrext_cmds=".dll" ++ need_lib_prefix=no ++ library_names_spec='$libname${shared_ext} $libname.a' ++ dynamic_linker='OS/2 ld.exe' ++ shlibpath_var=LIBPATH ++ ;; ++ ++osf3* | osf4* | osf5*) ++ version_type=osf ++ need_lib_prefix=no ++ need_version=no ++ soname_spec='${libname}${release}${shared_ext}$major' ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ shlibpath_var=LD_LIBRARY_PATH ++ sys_lib_search_path_spec="/usr/shlib /usr/ccs/lib /usr/lib/cmplrs/cc /usr/lib /usr/local/lib /var/shlib" ++ sys_lib_dlsearch_path_spec="$sys_lib_search_path_spec" ++ ;; ++ ++rdos*) ++ dynamic_linker=no ++ ;; ++ ++solaris*) ++ version_type=linux ++ need_lib_prefix=no ++ need_version=no ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ shlibpath_var=LD_LIBRARY_PATH ++ shlibpath_overrides_runpath=yes ++ hardcode_into_libs=yes ++ # ldd complains unless libraries are executable ++ postinstall_cmds='chmod +x $lib' ++ ;; ++ ++sunos4*) ++ version_type=sunos ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix' ++ finish_cmds='PATH="\$PATH:/usr/etc" ldconfig $libdir' ++ shlibpath_var=LD_LIBRARY_PATH ++ shlibpath_overrides_runpath=yes ++ if test "$with_gnu_ld" = yes; then ++ need_lib_prefix=no ++ fi ++ need_version=yes ++ ;; ++ ++sysv4 | sysv4.3*) ++ version_type=linux ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ shlibpath_var=LD_LIBRARY_PATH ++ case $host_vendor in ++ sni) ++ shlibpath_overrides_runpath=no ++ need_lib_prefix=no ++ runpath_var=LD_RUN_PATH ++ ;; ++ siemens) ++ need_lib_prefix=no ++ ;; ++ motorola) ++ need_lib_prefix=no ++ need_version=no ++ shlibpath_overrides_runpath=no ++ sys_lib_search_path_spec='/lib /usr/lib /usr/ccs/lib' ++ ;; ++ esac ++ ;; ++ ++sysv4*MP*) ++ if test -d /usr/nec ;then ++ version_type=linux ++ library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}' ++ soname_spec='$libname${shared_ext}.$major' ++ shlibpath_var=LD_LIBRARY_PATH ++ fi ++ ;; ++ ++sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*) ++ version_type=freebsd-elf ++ need_lib_prefix=no ++ need_version=no ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext} $libname${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ shlibpath_var=LD_LIBRARY_PATH ++ shlibpath_overrides_runpath=yes ++ hardcode_into_libs=yes ++ if test "$with_gnu_ld" = yes; then ++ sys_lib_search_path_spec='/usr/local/lib /usr/gnu/lib /usr/ccs/lib /usr/lib /lib' ++ else ++ sys_lib_search_path_spec='/usr/ccs/lib /usr/lib' ++ case $host_os in ++ sco3.2v5*) ++ sys_lib_search_path_spec="$sys_lib_search_path_spec /lib" ++ ;; ++ esac ++ fi ++ sys_lib_dlsearch_path_spec='/usr/lib' ++ ;; ++ ++tpf*) ++ # TPF is a cross-target only. Preferred cross-host = GNU/Linux. ++ version_type=linux ++ need_lib_prefix=no ++ need_version=no ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ shlibpath_var=LD_LIBRARY_PATH ++ shlibpath_overrides_runpath=no ++ hardcode_into_libs=yes ++ ;; ++ ++uts4*) ++ version_type=linux ++ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}' ++ soname_spec='${libname}${release}${shared_ext}$major' ++ shlibpath_var=LD_LIBRARY_PATH ++ ;; ++ ++*) ++ dynamic_linker=no ++ ;; ++esac ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $dynamic_linker" >&5 ++$as_echo "$dynamic_linker" >&6; } ++test "$dynamic_linker" = no && can_build_shared=no ++ ++variables_saved_for_relink="PATH $shlibpath_var $runpath_var" ++if test "$GCC" = yes; then ++ variables_saved_for_relink="$variables_saved_for_relink GCC_EXEC_PREFIX COMPILER_PATH LIBRARY_PATH" ++fi ++ ++if test "${lt_cv_sys_lib_search_path_spec+set}" = set; then ++ sys_lib_search_path_spec="$lt_cv_sys_lib_search_path_spec" ++fi ++if test "${lt_cv_sys_lib_dlsearch_path_spec+set}" = set; then ++ sys_lib_dlsearch_path_spec="$lt_cv_sys_lib_dlsearch_path_spec" ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking how to hardcode library paths into programs" >&5 ++$as_echo_n "checking how to hardcode library paths into programs... " >&6; } ++hardcode_action= ++if test -n "$hardcode_libdir_flag_spec" || ++ test -n "$runpath_var" || ++ test "X$hardcode_automatic" = "Xyes" ; then ++ ++ # We can hardcode non-existent directories. ++ if test "$hardcode_direct" != no && ++ # If the only mechanism to avoid hardcoding is shlibpath_var, we ++ # have to relink, otherwise we might link with an installed library ++ # when we should be linking with a yet-to-be-installed one ++ ## test "$_LT_TAGVAR(hardcode_shlibpath_var, )" != no && ++ test "$hardcode_minus_L" != no; then ++ # Linking always hardcodes the temporary library directory. ++ hardcode_action=relink ++ else ++ # We can link without hardcoding, and we can hardcode nonexisting dirs. ++ hardcode_action=immediate ++ fi ++else ++ # We cannot hardcode anything, or else we can only hardcode existing ++ # directories. ++ hardcode_action=unsupported ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $hardcode_action" >&5 ++$as_echo "$hardcode_action" >&6; } ++ ++if test "$hardcode_action" = relink || ++ test "$inherit_rpath" = yes; then ++ # Fast installation is not supported ++ enable_fast_install=no ++elif test "$shlibpath_overrides_runpath" = yes || ++ test "$enable_shared" = no; then ++ # Fast installation is not necessary ++ enable_fast_install=needless ++fi ++ ++ ++ ++ ++ ++ ++ if test "x$enable_dlopen" != xyes; then ++ enable_dlopen=unknown ++ enable_dlopen_self=unknown ++ enable_dlopen_self_static=unknown ++else ++ lt_cv_dlopen=no ++ lt_cv_dlopen_libs= ++ ++ case $host_os in ++ beos*) ++ lt_cv_dlopen="load_add_on" ++ lt_cv_dlopen_libs= ++ lt_cv_dlopen_self=yes ++ ;; ++ ++ mingw* | pw32* | cegcc*) ++ lt_cv_dlopen="LoadLibrary" ++ lt_cv_dlopen_libs= ++ ;; ++ ++ cygwin*) ++ lt_cv_dlopen="dlopen" ++ lt_cv_dlopen_libs= ++ ;; ++ ++ darwin*) ++ # if libdl is installed we need to link against it ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dlopen in -ldl" >&5 ++$as_echo_n "checking for dlopen in -ldl... " >&6; } ++if test "${ac_cv_lib_dl_dlopen+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-ldl $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char dlopen (); ++int ++main () ++{ ++return dlopen (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_dl_dlopen=yes ++else ++ ac_cv_lib_dl_dlopen=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dl_dlopen" >&5 ++$as_echo "$ac_cv_lib_dl_dlopen" >&6; } ++if test "x$ac_cv_lib_dl_dlopen" = x""yes; then : ++ lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl" ++else ++ ++ lt_cv_dlopen="dyld" ++ lt_cv_dlopen_libs= ++ lt_cv_dlopen_self=yes ++ ++fi ++ ++ ;; ++ ++ *) ++ ac_fn_c_check_func "$LINENO" "shl_load" "ac_cv_func_shl_load" ++if test "x$ac_cv_func_shl_load" = x""yes; then : ++ lt_cv_dlopen="shl_load" ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for shl_load in -ldld" >&5 ++$as_echo_n "checking for shl_load in -ldld... " >&6; } ++if test "${ac_cv_lib_dld_shl_load+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-ldld $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char shl_load (); ++int ++main () ++{ ++return shl_load (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_dld_shl_load=yes ++else ++ ac_cv_lib_dld_shl_load=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dld_shl_load" >&5 ++$as_echo "$ac_cv_lib_dld_shl_load" >&6; } ++if test "x$ac_cv_lib_dld_shl_load" = x""yes; then : ++ lt_cv_dlopen="shl_load" lt_cv_dlopen_libs="-ldld" ++else ++ ac_fn_c_check_func "$LINENO" "dlopen" "ac_cv_func_dlopen" ++if test "x$ac_cv_func_dlopen" = x""yes; then : ++ lt_cv_dlopen="dlopen" ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dlopen in -ldl" >&5 ++$as_echo_n "checking for dlopen in -ldl... " >&6; } ++if test "${ac_cv_lib_dl_dlopen+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-ldl $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char dlopen (); ++int ++main () ++{ ++return dlopen (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_dl_dlopen=yes ++else ++ ac_cv_lib_dl_dlopen=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dl_dlopen" >&5 ++$as_echo "$ac_cv_lib_dl_dlopen" >&6; } ++if test "x$ac_cv_lib_dl_dlopen" = x""yes; then : ++ lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl" ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dlopen in -lsvld" >&5 ++$as_echo_n "checking for dlopen in -lsvld... " >&6; } ++if test "${ac_cv_lib_svld_dlopen+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lsvld $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char dlopen (); ++int ++main () ++{ ++return dlopen (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_svld_dlopen=yes ++else ++ ac_cv_lib_svld_dlopen=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_svld_dlopen" >&5 ++$as_echo "$ac_cv_lib_svld_dlopen" >&6; } ++if test "x$ac_cv_lib_svld_dlopen" = x""yes; then : ++ lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-lsvld" ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dld_link in -ldld" >&5 ++$as_echo_n "checking for dld_link in -ldld... " >&6; } ++if test "${ac_cv_lib_dld_dld_link+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-ldld $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char dld_link (); ++int ++main () ++{ ++return dld_link (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_dld_dld_link=yes ++else ++ ac_cv_lib_dld_dld_link=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dld_dld_link" >&5 ++$as_echo "$ac_cv_lib_dld_dld_link" >&6; } ++if test "x$ac_cv_lib_dld_dld_link" = x""yes; then : ++ lt_cv_dlopen="dld_link" lt_cv_dlopen_libs="-ldld" ++fi ++ ++ ++fi ++ ++ ++fi ++ ++ ++fi ++ ++ ++fi ++ ++ ++fi ++ ++ ;; ++ esac ++ ++ if test "x$lt_cv_dlopen" != xno; then ++ enable_dlopen=yes ++ else ++ enable_dlopen=no ++ fi ++ ++ case $lt_cv_dlopen in ++ dlopen) ++ save_CPPFLAGS="$CPPFLAGS" ++ test "x$ac_cv_header_dlfcn_h" = xyes && CPPFLAGS="$CPPFLAGS -DHAVE_DLFCN_H" ++ ++ save_LDFLAGS="$LDFLAGS" ++ wl=$lt_prog_compiler_wl eval LDFLAGS=\"\$LDFLAGS $export_dynamic_flag_spec\" ++ ++ save_LIBS="$LIBS" ++ LIBS="$lt_cv_dlopen_libs $LIBS" ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether a program can dlopen itself" >&5 ++$as_echo_n "checking whether a program can dlopen itself... " >&6; } ++if test "${lt_cv_dlopen_self+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test "$cross_compiling" = yes; then : ++ lt_cv_dlopen_self=cross ++else ++ lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 ++ lt_status=$lt_dlunknown ++ cat > conftest.$ac_ext <<_LT_EOF ++#line __oline__ "configure" ++#include "confdefs.h" ++ ++#if HAVE_DLFCN_H ++#include ++#endif ++ ++#include ++ ++#ifdef RTLD_GLOBAL ++# define LT_DLGLOBAL RTLD_GLOBAL ++#else ++# ifdef DL_GLOBAL ++# define LT_DLGLOBAL DL_GLOBAL ++# else ++# define LT_DLGLOBAL 0 ++# endif ++#endif ++ ++/* We may have to define LT_DLLAZY_OR_NOW in the command line if we ++ find out it does not work in some platform. */ ++#ifndef LT_DLLAZY_OR_NOW ++# ifdef RTLD_LAZY ++# define LT_DLLAZY_OR_NOW RTLD_LAZY ++# else ++# ifdef DL_LAZY ++# define LT_DLLAZY_OR_NOW DL_LAZY ++# else ++# ifdef RTLD_NOW ++# define LT_DLLAZY_OR_NOW RTLD_NOW ++# else ++# ifdef DL_NOW ++# define LT_DLLAZY_OR_NOW DL_NOW ++# else ++# define LT_DLLAZY_OR_NOW 0 ++# endif ++# endif ++# endif ++# endif ++#endif ++ ++void fnord() { int i=42;} ++int main () ++{ ++ void *self = dlopen (0, LT_DLGLOBAL|LT_DLLAZY_OR_NOW); ++ int status = $lt_dlunknown; ++ ++ if (self) ++ { ++ if (dlsym (self,"fnord")) status = $lt_dlno_uscore; ++ else if (dlsym( self,"_fnord")) status = $lt_dlneed_uscore; ++ /* dlclose (self); */ ++ } ++ else ++ puts (dlerror ()); ++ ++ return status; ++} ++_LT_EOF ++ if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_link\""; } >&5 ++ (eval $ac_link) 2>&5 ++ ac_status=$? ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; } && test -s conftest${ac_exeext} 2>/dev/null; then ++ (./conftest; exit; ) >&5 2>/dev/null ++ lt_status=$? ++ case x$lt_status in ++ x$lt_dlno_uscore) lt_cv_dlopen_self=yes ;; ++ x$lt_dlneed_uscore) lt_cv_dlopen_self=yes ;; ++ x$lt_dlunknown|x*) lt_cv_dlopen_self=no ;; ++ esac ++ else : ++ # compilation failed ++ lt_cv_dlopen_self=no ++ fi ++fi ++rm -fr conftest* ++ ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_dlopen_self" >&5 ++$as_echo "$lt_cv_dlopen_self" >&6; } ++ ++ if test "x$lt_cv_dlopen_self" = xyes; then ++ wl=$lt_prog_compiler_wl eval LDFLAGS=\"\$LDFLAGS $lt_prog_compiler_static\" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether a statically linked program can dlopen itself" >&5 ++$as_echo_n "checking whether a statically linked program can dlopen itself... " >&6; } ++if test "${lt_cv_dlopen_self_static+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test "$cross_compiling" = yes; then : ++ lt_cv_dlopen_self_static=cross ++else ++ lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2 ++ lt_status=$lt_dlunknown ++ cat > conftest.$ac_ext <<_LT_EOF ++#line __oline__ "configure" ++#include "confdefs.h" ++ ++#if HAVE_DLFCN_H ++#include ++#endif ++ ++#include ++ ++#ifdef RTLD_GLOBAL ++# define LT_DLGLOBAL RTLD_GLOBAL ++#else ++# ifdef DL_GLOBAL ++# define LT_DLGLOBAL DL_GLOBAL ++# else ++# define LT_DLGLOBAL 0 ++# endif ++#endif ++ ++/* We may have to define LT_DLLAZY_OR_NOW in the command line if we ++ find out it does not work in some platform. */ ++#ifndef LT_DLLAZY_OR_NOW ++# ifdef RTLD_LAZY ++# define LT_DLLAZY_OR_NOW RTLD_LAZY ++# else ++# ifdef DL_LAZY ++# define LT_DLLAZY_OR_NOW DL_LAZY ++# else ++# ifdef RTLD_NOW ++# define LT_DLLAZY_OR_NOW RTLD_NOW ++# else ++# ifdef DL_NOW ++# define LT_DLLAZY_OR_NOW DL_NOW ++# else ++# define LT_DLLAZY_OR_NOW 0 ++# endif ++# endif ++# endif ++# endif ++#endif ++ ++void fnord() { int i=42;} ++int main () ++{ ++ void *self = dlopen (0, LT_DLGLOBAL|LT_DLLAZY_OR_NOW); ++ int status = $lt_dlunknown; ++ ++ if (self) ++ { ++ if (dlsym (self,"fnord")) status = $lt_dlno_uscore; ++ else if (dlsym( self,"_fnord")) status = $lt_dlneed_uscore; ++ /* dlclose (self); */ ++ } ++ else ++ puts (dlerror ()); ++ ++ return status; ++} ++_LT_EOF ++ if { { eval echo "\"\$as_me\":${as_lineno-$LINENO}: \"$ac_link\""; } >&5 ++ (eval $ac_link) 2>&5 ++ ac_status=$? ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; } && test -s conftest${ac_exeext} 2>/dev/null; then ++ (./conftest; exit; ) >&5 2>/dev/null ++ lt_status=$? ++ case x$lt_status in ++ x$lt_dlno_uscore) lt_cv_dlopen_self_static=yes ;; ++ x$lt_dlneed_uscore) lt_cv_dlopen_self_static=yes ;; ++ x$lt_dlunknown|x*) lt_cv_dlopen_self_static=no ;; ++ esac ++ else : ++ # compilation failed ++ lt_cv_dlopen_self_static=no ++ fi ++fi ++rm -fr conftest* ++ ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $lt_cv_dlopen_self_static" >&5 ++$as_echo "$lt_cv_dlopen_self_static" >&6; } ++ fi ++ ++ CPPFLAGS="$save_CPPFLAGS" ++ LDFLAGS="$save_LDFLAGS" ++ LIBS="$save_LIBS" ++ ;; ++ esac ++ ++ case $lt_cv_dlopen_self in ++ yes|no) enable_dlopen_self=$lt_cv_dlopen_self ;; ++ *) enable_dlopen_self=unknown ;; ++ esac ++ ++ case $lt_cv_dlopen_self_static in ++ yes|no) enable_dlopen_self_static=$lt_cv_dlopen_self_static ;; ++ *) enable_dlopen_self_static=unknown ;; ++ esac ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++striplib= ++old_striplib= ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether stripping libraries is possible" >&5 ++$as_echo_n "checking whether stripping libraries is possible... " >&6; } ++if test -n "$STRIP" && $STRIP -V 2>&1 | $GREP "GNU strip" >/dev/null; then ++ test -z "$old_striplib" && old_striplib="$STRIP --strip-debug" ++ test -z "$striplib" && striplib="$STRIP --strip-unneeded" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++else ++# FIXME - insert some real tests, host_os isn't really good enough ++ case $host_os in ++ darwin*) ++ if test -n "$STRIP" ; then ++ striplib="$STRIP -x" ++ old_striplib="$STRIP -S" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ fi ++ ;; ++ *) ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ ;; ++ esac ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ # Report which library types will actually be built ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking if libtool supports shared libraries" >&5 ++$as_echo_n "checking if libtool supports shared libraries... " >&6; } ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $can_build_shared" >&5 ++$as_echo "$can_build_shared" >&6; } ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether to build shared libraries" >&5 ++$as_echo_n "checking whether to build shared libraries... " >&6; } ++ test "$can_build_shared" = "no" && enable_shared=no ++ ++ # On AIX, shared libraries and static libraries use the same namespace, and ++ # are all built from PIC. ++ case $host_os in ++ aix3*) ++ test "$enable_shared" = yes && enable_static=no ++ if test -n "$RANLIB"; then ++ archive_cmds="$archive_cmds~\$RANLIB \$lib" ++ postinstall_cmds='$RANLIB $lib' ++ fi ++ ;; ++ ++ aix[4-9]*) ++ if test "$host_cpu" != ia64 && test "$aix_use_runtimelinking" = no ; then ++ test "$enable_shared" = yes && enable_static=no ++ fi ++ ;; ++ esac ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $enable_shared" >&5 ++$as_echo "$enable_shared" >&6; } ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether to build static libraries" >&5 ++$as_echo_n "checking whether to build static libraries... " >&6; } ++ # Make sure either enable_shared or enable_static is yes. ++ test "$enable_shared" = yes || enable_static=yes ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $enable_static" >&5 ++$as_echo "$enable_static" >&6; } ++ ++ ++ ++ ++fi ++ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++ ++CC="$lt_save_CC" ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ac_config_commands="$ac_config_commands libtool" ++ ++ ++ ++ ++# Only expand once: ++ ++ ++ ++# Checks for programs. ++#as# AC_PROG_CXX ++for ac_prog in gawk mawk nawk awk ++do ++ # Extract the first word of "$ac_prog", so it can be a program name with args. ++set dummy $ac_prog; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_AWK+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$AWK"; then ++ ac_cv_prog_AWK="$AWK" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_AWK="$ac_prog" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++AWK=$ac_cv_prog_AWK ++if test -n "$AWK"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $AWK" >&5 ++$as_echo "$AWK" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ test -n "$AWK" && break ++done ++ ++ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args. ++set dummy ${ac_tool_prefix}gcc; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_CC+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$CC"; then ++ ac_cv_prog_CC="$CC" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_CC="${ac_tool_prefix}gcc" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++CC=$ac_cv_prog_CC ++if test -n "$CC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 ++$as_echo "$CC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$ac_cv_prog_CC"; then ++ ac_ct_CC=$CC ++ # Extract the first word of "gcc", so it can be a program name with args. ++set dummy gcc; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_CC+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_CC"; then ++ ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_CC="gcc" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_CC=$ac_cv_prog_ac_ct_CC ++if test -n "$ac_ct_CC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5 ++$as_echo "$ac_ct_CC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ if test "x$ac_ct_CC" = x; then ++ CC="" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ CC=$ac_ct_CC ++ fi ++else ++ CC="$ac_cv_prog_CC" ++fi ++ ++if test -z "$CC"; then ++ if test -n "$ac_tool_prefix"; then ++ # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args. ++set dummy ${ac_tool_prefix}cc; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_CC+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$CC"; then ++ ac_cv_prog_CC="$CC" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_CC="${ac_tool_prefix}cc" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++CC=$ac_cv_prog_CC ++if test -n "$CC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 ++$as_echo "$CC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ fi ++fi ++if test -z "$CC"; then ++ # Extract the first word of "cc", so it can be a program name with args. ++set dummy cc; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_CC+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$CC"; then ++ ac_cv_prog_CC="$CC" # Let the user override the test. ++else ++ ac_prog_rejected=no ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then ++ ac_prog_rejected=yes ++ continue ++ fi ++ ac_cv_prog_CC="cc" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++if test $ac_prog_rejected = yes; then ++ # We found a bogon in the path, so make sure we never use it. ++ set dummy $ac_cv_prog_CC ++ shift ++ if test $@%:@ != 0; then ++ # We chose a different compiler from the bogus one. ++ # However, it has the same basename, so the bogon will be chosen ++ # first if we set CC to just the basename; use the full file name. ++ shift ++ ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@" ++ fi ++fi ++fi ++fi ++CC=$ac_cv_prog_CC ++if test -n "$CC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 ++$as_echo "$CC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++fi ++if test -z "$CC"; then ++ if test -n "$ac_tool_prefix"; then ++ for ac_prog in cl.exe ++ do ++ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args. ++set dummy $ac_tool_prefix$ac_prog; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_CC+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$CC"; then ++ ac_cv_prog_CC="$CC" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_CC="$ac_tool_prefix$ac_prog" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++CC=$ac_cv_prog_CC ++if test -n "$CC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5 ++$as_echo "$CC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ test -n "$CC" && break ++ done ++fi ++if test -z "$CC"; then ++ ac_ct_CC=$CC ++ for ac_prog in cl.exe ++do ++ # Extract the first word of "$ac_prog", so it can be a program name with args. ++set dummy $ac_prog; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ac_ct_CC+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ac_ct_CC"; then ++ ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ac_ct_CC="$ac_prog" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++fi ++fi ++ac_ct_CC=$ac_cv_prog_ac_ct_CC ++if test -n "$ac_ct_CC"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5 ++$as_echo "$ac_ct_CC" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ test -n "$ac_ct_CC" && break ++done ++ ++ if test "x$ac_ct_CC" = x; then ++ CC="" ++ else ++ case $cross_compiling:$ac_tool_warned in ++yes:) ++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5 ++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;} ++ac_tool_warned=yes ;; ++esac ++ CC=$ac_ct_CC ++ fi ++fi ++ ++fi ++ ++ ++test -z "$CC" && { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5 ++$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} ++as_fn_error "no acceptable C compiler found in \$PATH ++See \`config.log' for more details." "$LINENO" 5; } ++ ++# Provide some information about the compiler. ++$as_echo "$as_me:${as_lineno-$LINENO}: checking for C compiler version" >&5 ++set X $ac_compile ++ac_compiler=$2 ++for ac_option in --version -v -V -qversion; do ++ { { ac_try="$ac_compiler $ac_option >&5" ++case "(($ac_try" in ++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;; ++ *) ac_try_echo=$ac_try;; ++esac ++eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\"" ++$as_echo "$ac_try_echo"; } >&5 ++ (eval "$ac_compiler $ac_option >&5") 2>conftest.err ++ ac_status=$? ++ if test -s conftest.err; then ++ sed '10a\ ++... rest of stderr output deleted ... ++ 10q' conftest.err >conftest.er1 ++ cat conftest.er1 >&5 ++ fi ++ rm -f conftest.er1 conftest.err ++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5 ++ test $ac_status = 0; } ++done ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether we are using the GNU C compiler" >&5 ++$as_echo_n "checking whether we are using the GNU C compiler... " >&6; } ++if test "${ac_cv_c_compiler_gnu+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++#ifndef __GNUC__ ++ choke me ++#endif ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ac_compiler_gnu=yes ++else ++ ac_compiler_gnu=no ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++ac_cv_c_compiler_gnu=$ac_compiler_gnu ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_c_compiler_gnu" >&5 ++$as_echo "$ac_cv_c_compiler_gnu" >&6; } ++if test $ac_compiler_gnu = yes; then ++ GCC=yes ++else ++ GCC= ++fi ++ac_test_CFLAGS=${CFLAGS+set} ++ac_save_CFLAGS=$CFLAGS ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $CC accepts -g" >&5 ++$as_echo_n "checking whether $CC accepts -g... " >&6; } ++if test "${ac_cv_prog_cc_g+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_save_c_werror_flag=$ac_c_werror_flag ++ ac_c_werror_flag=yes ++ ac_cv_prog_cc_g=no ++ CFLAGS="-g" ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_prog_cc_g=yes ++else ++ CFLAGS="" ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ++else ++ ac_c_werror_flag=$ac_save_c_werror_flag ++ CFLAGS="-g" ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_prog_cc_g=yes ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++ ac_c_werror_flag=$ac_save_c_werror_flag ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_g" >&5 ++$as_echo "$ac_cv_prog_cc_g" >&6; } ++if test "$ac_test_CFLAGS" = set; then ++ CFLAGS=$ac_save_CFLAGS ++elif test $ac_cv_prog_cc_g = yes; then ++ if test "$GCC" = yes; then ++ CFLAGS="-g -O2" ++ else ++ CFLAGS="-g" ++ fi ++else ++ if test "$GCC" = yes; then ++ CFLAGS="-O2" ++ else ++ CFLAGS= ++ fi ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $CC option to accept ISO C89" >&5 ++$as_echo_n "checking for $CC option to accept ISO C89... " >&6; } ++if test "${ac_cv_prog_cc_c89+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_cv_prog_cc_c89=no ++ac_save_CC=$CC ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++#include ++#include ++#include ++/* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */ ++struct buf { int x; }; ++FILE * (*rcsopen) (struct buf *, struct stat *, int); ++static char *e (p, i) ++ char **p; ++ int i; ++{ ++ return p[i]; ++} ++static char *f (char * (*g) (char **, int), char **p, ...) ++{ ++ char *s; ++ va_list v; ++ va_start (v,p); ++ s = g (p, va_arg (v,int)); ++ va_end (v); ++ return s; ++} ++ ++/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has ++ function prototypes and stuff, but not '\xHH' hex character constants. ++ These don't provoke an error unfortunately, instead are silently treated ++ as 'x'. The following induces an error, until -std is added to get ++ proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an ++ array size at least. It's necessary to write '\x00'==0 to get something ++ that's true only with -std. */ ++int osf4_cc_array ['\x00' == 0 ? 1 : -1]; ++ ++/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters ++ inside strings and character constants. */ ++#define FOO(x) 'x' ++int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1]; ++ ++int test (int i, double x); ++struct s1 {int (*f) (int a);}; ++struct s2 {int (*f) (double a);}; ++int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int); ++int argc; ++char **argv; ++int ++main () ++{ ++return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1]; ++ ; ++ return 0; ++} ++_ACEOF ++for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \ ++ -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__" ++do ++ CC="$ac_save_CC $ac_arg" ++ if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_prog_cc_c89=$ac_arg ++fi ++rm -f core conftest.err conftest.$ac_objext ++ test "x$ac_cv_prog_cc_c89" != "xno" && break ++done ++rm -f conftest.$ac_ext ++CC=$ac_save_CC ++ ++fi ++# AC_CACHE_VAL ++case "x$ac_cv_prog_cc_c89" in ++ x) ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: none needed" >&5 ++$as_echo "none needed" >&6; } ;; ++ xno) ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5 ++$as_echo "unsupported" >&6; } ;; ++ *) ++ CC="$CC $ac_cv_prog_cc_c89" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c89" >&5 ++$as_echo "$ac_cv_prog_cc_c89" >&6; } ;; ++esac ++if test "x$ac_cv_prog_cc_c89" != xno; then : ++ ++fi ++ ++ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++ ++depcc="$CC" am_compiler_list= ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking dependency style of $depcc" >&5 ++$as_echo_n "checking dependency style of $depcc... " >&6; } ++if test "${am_cv_CC_dependencies_compiler_type+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then ++ # We make a subdir and do the tests there. Otherwise we can end up ++ # making bogus files that we don't know about and never remove. For ++ # instance it was reported that on HP-UX the gcc test will end up ++ # making a dummy file named `D' -- because `-MD' means `put the output ++ # in D'. ++ mkdir conftest.dir ++ # Copy depcomp to subdir because otherwise we won't find it if we're ++ # using a relative directory. ++ cp "$am_depcomp" conftest.dir ++ cd conftest.dir ++ # We will build objects and dependencies in a subdirectory because ++ # it helps to detect inapplicable dependency modes. For instance ++ # both Tru64's cc and ICC support -MD to output dependencies as a ++ # side effect of compilation, but ICC will put the dependencies in ++ # the current directory while Tru64 will put them in the object ++ # directory. ++ mkdir sub ++ ++ am_cv_CC_dependencies_compiler_type=none ++ if test "$am_compiler_list" = ""; then ++ am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp` ++ fi ++ am__universal=false ++ case " $depcc " in #( ++ *\ -arch\ *\ -arch\ *) am__universal=true ;; ++ esac ++ ++ for depmode in $am_compiler_list; do ++ # Setup a source with many dependencies, because some compilers ++ # like to wrap large dependency lists on column 80 (with \), and ++ # we should not choose a depcomp mode which is confused by this. ++ # ++ # We need to recreate these files for each test, as the compiler may ++ # overwrite some of them when testing with obscure command lines. ++ # This happens at least with the AIX C compiler. ++ : > sub/conftest.c ++ for i in 1 2 3 4 5 6; do ++ echo '#include "conftst'$i'.h"' >> sub/conftest.c ++ # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with ++ # Solaris 8's {/usr,}/bin/sh. ++ touch sub/conftst$i.h ++ done ++ echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf ++ ++ # We check with `-c' and `-o' for the sake of the "dashmstdout" ++ # mode. It turns out that the SunPro C++ compiler does not properly ++ # handle `-M -o', and we need to detect this. Also, some Intel ++ # versions had trouble with output in subdirs ++ am__obj=sub/conftest.${OBJEXT-o} ++ am__minus_obj="-o $am__obj" ++ case $depmode in ++ gcc) ++ # This depmode causes a compiler race in universal mode. ++ test "$am__universal" = false || continue ++ ;; ++ nosideeffect) ++ # after this tag, mechanisms are not by side-effect, so they'll ++ # only be used when explicitly requested ++ if test "x$enable_dependency_tracking" = xyes; then ++ continue ++ else ++ break ++ fi ++ ;; ++ msvisualcpp | msvcmsys) ++ # This compiler won't grok `-c -o', but also, the minuso test has ++ # not run yet. These depmodes are late enough in the game, and ++ # so weak that their functioning should not be impacted. ++ am__obj=conftest.${OBJEXT-o} ++ am__minus_obj= ++ ;; ++ none) break ;; ++ esac ++ if depmode=$depmode \ ++ source=sub/conftest.c object=$am__obj \ ++ depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \ ++ $SHELL ./depcomp $depcc -c $am__minus_obj sub/conftest.c \ ++ >/dev/null 2>conftest.err && ++ grep sub/conftst1.h sub/conftest.Po > /dev/null 2>&1 && ++ grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 && ++ grep $am__obj sub/conftest.Po > /dev/null 2>&1 && ++ ${MAKE-make} -s -f confmf > /dev/null 2>&1; then ++ # icc doesn't choke on unknown options, it will just issue warnings ++ # or remarks (even with -Werror). So we grep stderr for any message ++ # that says an option was ignored or not supported. ++ # When given -MP, icc 7.0 and 7.1 complain thusly: ++ # icc: Command line warning: ignoring option '-M'; no argument required ++ # The diagnosis changed in icc 8.0: ++ # icc: Command line remark: option '-MP' not supported ++ if (grep 'ignoring option' conftest.err || ++ grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else ++ am_cv_CC_dependencies_compiler_type=$depmode ++ break ++ fi ++ fi ++ done ++ ++ cd .. ++ rm -rf conftest.dir ++else ++ am_cv_CC_dependencies_compiler_type=none ++fi ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $am_cv_CC_dependencies_compiler_type" >&5 ++$as_echo "$am_cv_CC_dependencies_compiler_type" >&6; } ++CCDEPMODE=depmode=$am_cv_CC_dependencies_compiler_type ++ ++ if ++ test "x$enable_dependency_tracking" != xno \ ++ && test "$am_cv_CC_dependencies_compiler_type" = gcc3; then ++ am__fastdepCC_TRUE= ++ am__fastdepCC_FALSE='#' ++else ++ am__fastdepCC_TRUE='#' ++ am__fastdepCC_FALSE= ++fi ++ ++ ++ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking how to run the C preprocessor" >&5 ++$as_echo_n "checking how to run the C preprocessor... " >&6; } ++# On Suns, sometimes $CPP names a directory. ++if test -n "$CPP" && test -d "$CPP"; then ++ CPP= ++fi ++if test -z "$CPP"; then ++ if test "${ac_cv_prog_CPP+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ # Double quotes because CPP needs to be expanded ++ for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp" ++ do ++ ac_preproc_ok=false ++for ac_c_preproc_warn_flag in '' yes ++do ++ # Use a header file that comes with gcc, so configuring glibc ++ # with a fresh cross-compiler works. ++ # Prefer to if __STDC__ is defined, since ++ # exists even on freestanding compilers. ++ # On the NeXT, cc -E runs the code through the compiler's parser, ++ # not just through cpp. "Syntax error" is here to catch this case. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++@%:@ifdef __STDC__ ++@%:@ include ++@%:@else ++@%:@ include ++@%:@endif ++ Syntax error ++_ACEOF ++if ac_fn_c_try_cpp "$LINENO"; then : ++ ++else ++ # Broken: fails on valid input. ++continue ++fi ++rm -f conftest.err conftest.$ac_ext ++ ++ # OK, works on sane cases. Now check whether nonexistent headers ++ # can be detected and how. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++@%:@include ++_ACEOF ++if ac_fn_c_try_cpp "$LINENO"; then : ++ # Broken: success on invalid input. ++continue ++else ++ # Passes both tests. ++ac_preproc_ok=: ++break ++fi ++rm -f conftest.err conftest.$ac_ext ++ ++done ++# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. ++rm -f conftest.err conftest.$ac_ext ++if $ac_preproc_ok; then : ++ break ++fi ++ ++ done ++ ac_cv_prog_CPP=$CPP ++ ++fi ++ CPP=$ac_cv_prog_CPP ++else ++ ac_cv_prog_CPP=$CPP ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $CPP" >&5 ++$as_echo "$CPP" >&6; } ++ac_preproc_ok=false ++for ac_c_preproc_warn_flag in '' yes ++do ++ # Use a header file that comes with gcc, so configuring glibc ++ # with a fresh cross-compiler works. ++ # Prefer to if __STDC__ is defined, since ++ # exists even on freestanding compilers. ++ # On the NeXT, cc -E runs the code through the compiler's parser, ++ # not just through cpp. "Syntax error" is here to catch this case. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++@%:@ifdef __STDC__ ++@%:@ include ++@%:@else ++@%:@ include ++@%:@endif ++ Syntax error ++_ACEOF ++if ac_fn_c_try_cpp "$LINENO"; then : ++ ++else ++ # Broken: fails on valid input. ++continue ++fi ++rm -f conftest.err conftest.$ac_ext ++ ++ # OK, works on sane cases. Now check whether nonexistent headers ++ # can be detected and how. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++@%:@include ++_ACEOF ++if ac_fn_c_try_cpp "$LINENO"; then : ++ # Broken: success on invalid input. ++continue ++else ++ # Passes both tests. ++ac_preproc_ok=: ++break ++fi ++rm -f conftest.err conftest.$ac_ext ++ ++done ++# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped. ++rm -f conftest.err conftest.$ac_ext ++if $ac_preproc_ok; then : ++ ++else ++ { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5 ++$as_echo "$as_me: error: in \`$ac_pwd':" >&2;} ++as_fn_error "C preprocessor \"$CPP\" fails sanity check ++See \`config.log' for more details." "$LINENO" 5; } ++fi ++ ++ac_ext=c ++ac_cpp='$CPP $CPPFLAGS' ++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ++ac_compiler_gnu=$ac_cv_c_compiler_gnu ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for inline" >&5 ++$as_echo_n "checking for inline... " >&6; } ++if test "${ac_cv_c_inline+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_cv_c_inline=no ++for ac_kw in inline __inline__ __inline; do ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#ifndef __cplusplus ++typedef int foo_t; ++static $ac_kw foo_t static_foo () {return 0; } ++$ac_kw foo_t foo () {return 0; } ++#endif ++ ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_c_inline=$ac_kw ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++ test "$ac_cv_c_inline" != no && break ++done ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_c_inline" >&5 ++$as_echo "$ac_cv_c_inline" >&6; } ++ ++case $ac_cv_c_inline in ++ inline | yes) ;; ++ *) ++ case $ac_cv_c_inline in ++ no) ac_val=;; ++ *) ac_val=$ac_cv_c_inline;; ++ esac ++ cat >>confdefs.h <<_ACEOF ++#ifndef __cplusplus ++#define inline $ac_val ++#endif ++_ACEOF ++ ;; ++esac ++ ++#as# AC_PROG_INSTALL ++#as# AC_PROG_LN_S ++#as# AC_PROG_MAKE_SET ++#as# AC_PROG_RANLIB ++ ++# Checks for libraries. ++ ++# none needed for the libraries we build ++# external library dependencies tested in m4 macros: X11 gd, z, png ++ ++ ++ ++ ++if test "$CC" != "gcc"; then ++ ++if test "`uname`" = "IRIX" || test "`uname`" = "IRIX64" ; then ++if test "$CC" != "gcc"; then ++ CFLAGS="$CFLAGS" ++ # ++# Handle SGI compiler flags ++# ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for sgiabi" >&5 ++$as_echo_n "checking for sgiabi... " >&6; } ++ ++@%:@ Check whether --with-sgiabi was given. ++if test "${with_sgiabi+set}" = set; then : ++ withval=$with_sgiabi; if test "$withval" != no ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ ++ if test "`uname`" = "IRIX64" || test "`uname`" = "IRIX" ; then ++ ++ if test "$withval" = n32m3 ; then ++ CFLAGS="-n32 -mips3 $CFLAGS" ++ LD="/usr/bin/ld -n32 -mips3 -IPA -L/usr/lib32" ++ if test -d /usr/freeware ; then ++ LDFLAGS="-L/usr/freeware/lib32 $LDFLAGS" ++ fi ++ fi ++ ++ if test "$withval" = n32m4 ; then ++ CFLAGS="-n32 -mips4 $CFLAGS" ++ LD="/usr/bin/ld -n32 -mips4 -IPA -L/usr/lib32" ++ if test -d /usr/freeware ; then ++ LDFLAGS="-L/usr/freeware/lib32 $LDFLAGS" ++ fi ++ fi ++ ++ if test "$withval" = 64m3 ; then ++ CFLAGS="-64 -mips3 $CFLAGS" ++ LD="/usr/bin/ld -64 -mips3 -IPA -L/usr/lib64" ++ if test -d /usr/freeware ; then ++ LDFLAGS="-L/usr/freeware/lib64 $LDFLAGS" ++ fi ++ fi ++ ++ if test "$withval" = 64m4 ; then ++ CFLAGS="-64 -mips4 $CFLAGS" ++ LD="/usr/bin/ld -64 -mips4 -IPA -L/usr/lib64" ++ if test -d /usr/freeware ; then ++ LDFLAGS="-L/usr/freeware/lib64 $LDFLAGS" ++ fi ++ fi ++ ++ fi ++ ++ ++fi ++else ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ ++fi ++ ++ ++ ++fi ++fi ++ ++ ++ ++if test "${enable_64+set}" != set; then ++enable_64=no ++fi ++ ++ ++@%:@ Check whether --enable-64 was given. ++if test "${enable_64+set}" = set; then : ++ enableval=$enable_64; ++fi ++ ++if test "${enable_64}" = "yes" ; then ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for 64bit compilation support" >&5 ++$as_echo_n "checking for 64bit compilation support... " >&6; } ++ ++ ++if test "`uname`" = "Linux"; then ++CPPFLAGS="-DAJ_Linux64 $CPPFLAGS" ++fi ++ ++ ++if test "`uname`" = "FreeBSD"; then ++CPPFLAGS="-DAJ_FreeBSD64 $CPPFLAGS" ++fi ++ ++ ++ ++ ++if test "`uname`" = "OSF1"; then ++CPPFLAGS="-DAJ_OSF164 $CPPFLAGS" ++fi ++ ++ ++if test "`uname`" = "IRIX" || test "`uname`" = "IRIX64"; then ++CPPFLAGS="-DAJ_IRIX64 $CPPFLAGS" ++fi ++ ++ ++if test "`uname`" = "AIX"; then ++CPPFLAGS="-DAJ_AIX64 $CPPFLAGS" ++if test "$CC" != "gcc"; then ++CC="$CC -q64" ++fi ++NM="nm -B -X 64" ++AR="ar -X 64" ++fi ++ ++ ++if test "`uname`" = "HP-UX"; then ++if test "$CC" != "gcc"; then ++CC="$CC +DD64" ++fi ++CPPFLAGS="-DAJ_HPUX64 $CPPFLAGS" ++fi ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: done" >&5 ++$as_echo "done" >&6; } ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++ ++if test "`uname`" = "AIX"; then ++CFLAGS="$CFLAGS -O3 -qstrict -qarch=auto -qtune=auto" ++fi ++ ++ ++if test "`uname`" = "IRIX" || test "`uname`" = "IRIX64" ; then ++LD="/usr/bin/ld -IPA" ++CFLAGS="$CFLAGS -O3" ++fi ++ ++ ++if test "`uname`" = "HP-UX"; then ++CFLAGS="$CFLAGS -fast" ++fi ++ ++ ++if test "`uname`" = "OSF1"; then ++CFLAGS="$CFLAGS -fast -U_FASTMATH" ++fi ++ ++ ++if test "`uname`" = "SunOS"; then ++CFLAGS="$CFLAGS -O" ++ ++ ++if test "${enable_64}" = "yes" ; then ++CFLAGS="$CFLAGS -xtarget=ultra -xarch=v9" ++fi ++fi ++ ++ ++if test "`uname`" = "Linux"; then ++CFLAGS="$CFLAGS -O2" ++fi ++ ++ ++if test "`uname`" = "FreeBSD"; then ++CFLAGS="$CFLAGS -O2" ++fi ++ ++ ++ ++else ++ ++ ++if test "`uname -a | grep Darwin`"; then ++ if test "`uname -a | grep i386`"; then ++ CFLAGS="$CFLAGS -O1" ++ else ++ CFLAGS="$CFLAGS -O2" ++ fi ++ ++else ++CFLAGS="$CFLAGS -O2" ++fi ++ ++fi ++ ++ ++ ++if test "`uname`" = "SunOS"; then ++CFLAGS="$CFLAGS -D__EXTENSIONS__" ++fi ++ ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether byte ordering is bigendian" >&5 ++$as_echo_n "checking whether byte ordering is bigendian... " >&6; } ++if test "${ac_cv_c_bigendian+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_cv_c_bigendian=unknown ++ # See if we're dealing with a universal compiler. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#ifndef __APPLE_CC__ ++ not a universal capable compiler ++ #endif ++ typedef int dummy; ++ ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ++ # Check for potential -arch flags. It is not universal unless ++ # there are at least two -arch flags with different values. ++ ac_arch= ++ ac_prev= ++ for ac_word in $CC $CFLAGS $CPPFLAGS $LDFLAGS; do ++ if test -n "$ac_prev"; then ++ case $ac_word in ++ i?86 | x86_64 | ppc | ppc64) ++ if test -z "$ac_arch" || test "$ac_arch" = "$ac_word"; then ++ ac_arch=$ac_word ++ else ++ ac_cv_c_bigendian=universal ++ break ++ fi ++ ;; ++ esac ++ ac_prev= ++ elif test "x$ac_word" = "x-arch"; then ++ ac_prev=arch ++ fi ++ done ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++ if test $ac_cv_c_bigendian = unknown; then ++ # See if sys/param.h defines the BYTE_ORDER macro. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++ #include ++ ++int ++main () ++{ ++#if ! (defined BYTE_ORDER && defined BIG_ENDIAN \ ++ && defined LITTLE_ENDIAN && BYTE_ORDER && BIG_ENDIAN \ ++ && LITTLE_ENDIAN) ++ bogus endian macros ++ #endif ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ # It does; now see whether it defined to BIG_ENDIAN or not. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++ #include ++ ++int ++main () ++{ ++#if BYTE_ORDER != BIG_ENDIAN ++ not big endian ++ #endif ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_c_bigendian=yes ++else ++ ac_cv_c_bigendian=no ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++ fi ++ if test $ac_cv_c_bigendian = unknown; then ++ # See if defines _LITTLE_ENDIAN or _BIG_ENDIAN (e.g., Solaris). ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++ ++int ++main () ++{ ++#if ! (defined _LITTLE_ENDIAN || defined _BIG_ENDIAN) ++ bogus endian macros ++ #endif ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ # It does; now see whether it defined to _BIG_ENDIAN or not. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++ ++int ++main () ++{ ++#ifndef _BIG_ENDIAN ++ not big endian ++ #endif ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_c_bigendian=yes ++else ++ ac_cv_c_bigendian=no ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++ fi ++ if test $ac_cv_c_bigendian = unknown; then ++ # Compile a test program. ++ if test "$cross_compiling" = yes; then : ++ # Try to guess by grepping values from an object file. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++short int ascii_mm[] = ++ { 0x4249, 0x4765, 0x6E44, 0x6961, 0x6E53, 0x7953, 0 }; ++ short int ascii_ii[] = ++ { 0x694C, 0x5454, 0x656C, 0x6E45, 0x6944, 0x6E61, 0 }; ++ int use_ascii (int i) { ++ return ascii_mm[i] + ascii_ii[i]; ++ } ++ short int ebcdic_ii[] = ++ { 0x89D3, 0xE3E3, 0x8593, 0x95C5, 0x89C4, 0x9581, 0 }; ++ short int ebcdic_mm[] = ++ { 0xC2C9, 0xC785, 0x95C4, 0x8981, 0x95E2, 0xA8E2, 0 }; ++ int use_ebcdic (int i) { ++ return ebcdic_mm[i] + ebcdic_ii[i]; ++ } ++ extern int foo; ++ ++int ++main () ++{ ++return use_ascii (foo) == use_ebcdic (foo); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ if grep BIGenDianSyS conftest.$ac_objext >/dev/null; then ++ ac_cv_c_bigendian=yes ++ fi ++ if grep LiTTleEnDian conftest.$ac_objext >/dev/null ; then ++ if test "$ac_cv_c_bigendian" = unknown; then ++ ac_cv_c_bigendian=no ++ else ++ # finding both strings is unlikely to happen, but who knows? ++ ac_cv_c_bigendian=unknown ++ fi ++ fi ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++else ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++$ac_includes_default ++int ++main () ++{ ++ ++ /* Are we little or big endian? From Harbison&Steele. */ ++ union ++ { ++ long int l; ++ char c[sizeof (long int)]; ++ } u; ++ u.l = 1; ++ return u.c[sizeof (long int) - 1] == 1; ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_run "$LINENO"; then : ++ ac_cv_c_bigendian=no ++else ++ ac_cv_c_bigendian=yes ++fi ++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \ ++ conftest.$ac_objext conftest.beam conftest.$ac_ext ++fi ++ ++ fi ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_c_bigendian" >&5 ++$as_echo "$ac_cv_c_bigendian" >&6; } ++ case $ac_cv_c_bigendian in #( ++ yes) ++ CPPFLAGS="$CPPFLAGS -DBENDIAN";; #( ++ no) ++ CPPFLAGS="$CPPFLAGS -DLENDIAN" ;; #( ++ universal) ++ ++$as_echo "@%:@define AC_APPLE_UNIVERSAL_BUILD 1" >>confdefs.h ++ ++ ;; #( ++ *) ++ as_fn_error "unknown endianness ++ presetting ac_cv_c_bigendian=no (or yes) will help" "$LINENO" 5 ;; ++ esac ++ ++ ++ ++ ++AJAX_FIXED_ROOT="\\\"`pwd`/emboss\\\"" ++ ++EMBOSS_TOP=`pwd` ++ ++AJAX_SYSTEM="\\\"`uname`\\\"" ++ ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether ln -s works" >&5 ++$as_echo_n "checking whether ln -s works... " >&6; } ++LN_S=$as_ln_s ++if test "$LN_S" = "ln -s"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no, using $LN_S" >&5 ++$as_echo "no, using $LN_S" >&6; } ++fi ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether ${MAKE-make} sets \$(MAKE)" >&5 ++$as_echo_n "checking whether ${MAKE-make} sets \$(MAKE)... " >&6; } ++set x ${MAKE-make} ++ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'` ++if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then : ++ $as_echo_n "(cached) " >&6 ++else ++ cat >conftest.make <<\_ACEOF ++SHELL = /bin/sh ++all: ++ @echo '@@@%%%=$(MAKE)=@@@%%%' ++_ACEOF ++# GNU make sometimes prints "make[1]: Entering...", which would confuse us. ++case `${MAKE-make} -f conftest.make 2>/dev/null` in ++ *@@@%%%=?*=@@@%%%*) ++ eval ac_cv_prog_make_${ac_make}_set=yes;; ++ *) ++ eval ac_cv_prog_make_${ac_make}_set=no;; ++esac ++rm -f conftest.make ++fi ++if eval test \$ac_cv_prog_make_${ac_make}_set = yes; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ SET_MAKE= ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ SET_MAKE="MAKE=${MAKE-make}" ++fi ++ ++ ++if test "${with_x}" != "no" ; then ++if test "`uname -a | grep Darwin`"; then ++OSXX=`sw_vers -productVersion | sed 's/\(10\.[0-9]*\).*/\1/'` ++if test ${OSXX} '>' '10.4'; then ++CFLAGS="$CFLAGS -I/usr/X11/include -L/usr/X11/lib" ++fi ++fi ++fi ++ ++# Checks for header files. ++#as# AC_PATH_X ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for X" >&5 ++$as_echo_n "checking for X... " >&6; } ++ ++ ++@%:@ Check whether --with-x was given. ++if test "${with_x+set}" = set; then : ++ withval=$with_x; ++fi ++ ++# $have_x is `yes', `no', `disabled', or empty when we do not yet know. ++if test "x$with_x" = xno; then ++ # The user explicitly disabled X. ++ have_x=disabled ++else ++ case $x_includes,$x_libraries in #( ++ *\'*) as_fn_error "cannot use X directory names containing '" "$LINENO" 5;; #( ++ *,NONE | NONE,*) if test "${ac_cv_have_x+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ # One or both of the vars are not set, and there is no cached value. ++ac_x_includes=no ac_x_libraries=no ++rm -f -r conftest.dir ++if mkdir conftest.dir; then ++ cd conftest.dir ++ cat >Imakefile <<'_ACEOF' ++incroot: ++ @echo incroot='${INCROOT}' ++usrlibdir: ++ @echo usrlibdir='${USRLIBDIR}' ++libdir: ++ @echo libdir='${LIBDIR}' ++_ACEOF ++ if (export CC; ${XMKMF-xmkmf}) >/dev/null 2>/dev/null && test -f Makefile; then ++ # GNU make sometimes prints "make[1]: Entering...", which would confuse us. ++ for ac_var in incroot usrlibdir libdir; do ++ eval "ac_im_$ac_var=\`\${MAKE-make} $ac_var 2>/dev/null | sed -n 's/^$ac_var=//p'\`" ++ done ++ # Open Windows xmkmf reportedly sets LIBDIR instead of USRLIBDIR. ++ for ac_extension in a so sl dylib la dll; do ++ if test ! -f "$ac_im_usrlibdir/libX11.$ac_extension" && ++ test -f "$ac_im_libdir/libX11.$ac_extension"; then ++ ac_im_usrlibdir=$ac_im_libdir; break ++ fi ++ done ++ # Screen out bogus values from the imake configuration. They are ++ # bogus both because they are the default anyway, and because ++ # using them would break gcc on systems where it needs fixed includes. ++ case $ac_im_incroot in ++ /usr/include) ac_x_includes= ;; ++ *) test -f "$ac_im_incroot/X11/Xos.h" && ac_x_includes=$ac_im_incroot;; ++ esac ++ case $ac_im_usrlibdir in ++ /usr/lib | /usr/lib64 | /lib | /lib64) ;; ++ *) test -d "$ac_im_usrlibdir" && ac_x_libraries=$ac_im_usrlibdir ;; ++ esac ++ fi ++ cd .. ++ rm -f -r conftest.dir ++fi ++ ++# Standard set of common directories for X headers. ++# Check X11 before X11Rn because it is often a symlink to the current release. ++ac_x_header_dirs=' ++/usr/X11/include ++/usr/X11R7/include ++/usr/X11R6/include ++/usr/X11R5/include ++/usr/X11R4/include ++ ++/usr/include/X11 ++/usr/include/X11R7 ++/usr/include/X11R6 ++/usr/include/X11R5 ++/usr/include/X11R4 ++ ++/usr/local/X11/include ++/usr/local/X11R7/include ++/usr/local/X11R6/include ++/usr/local/X11R5/include ++/usr/local/X11R4/include ++ ++/usr/local/include/X11 ++/usr/local/include/X11R7 ++/usr/local/include/X11R6 ++/usr/local/include/X11R5 ++/usr/local/include/X11R4 ++ ++/usr/X386/include ++/usr/x386/include ++/usr/XFree86/include/X11 ++ ++/usr/include ++/usr/local/include ++/usr/unsupported/include ++/usr/athena/include ++/usr/local/x11r5/include ++/usr/lpp/Xamples/include ++ ++/usr/openwin/include ++/usr/openwin/share/include' ++ ++if test "$ac_x_includes" = no; then ++ # Guess where to find include files, by looking for Xlib.h. ++ # First, try using that file with no special directory specified. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++@%:@include ++_ACEOF ++if ac_fn_c_try_cpp "$LINENO"; then : ++ # We can compile using X headers with no special include directory. ++ac_x_includes= ++else ++ for ac_dir in $ac_x_header_dirs; do ++ if test -r "$ac_dir/X11/Xlib.h"; then ++ ac_x_includes=$ac_dir ++ break ++ fi ++done ++fi ++rm -f conftest.err conftest.$ac_ext ++fi # $ac_x_includes = no ++ ++if test "$ac_x_libraries" = no; then ++ # Check for the libraries. ++ # See if we find them without any special options. ++ # Don't add to $LIBS permanently. ++ ac_save_LIBS=$LIBS ++ LIBS="-lX11 $LIBS" ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++@%:@include ++int ++main () ++{ ++XrmInitialize () ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ LIBS=$ac_save_LIBS ++# We can link X programs with no special library path. ++ac_x_libraries= ++else ++ LIBS=$ac_save_LIBS ++for ac_dir in `$as_echo "$ac_x_includes $ac_x_header_dirs" | sed s/include/lib/g` ++do ++ # Don't even attempt the hair of trying to link an X program! ++ for ac_extension in a so sl dylib la dll; do ++ if test -r "$ac_dir/libX11.$ac_extension"; then ++ ac_x_libraries=$ac_dir ++ break 2 ++ fi ++ done ++done ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++fi # $ac_x_libraries = no ++ ++case $ac_x_includes,$ac_x_libraries in #( ++ no,* | *,no | *\'*) ++ # Didn't find X, or a directory has "'" in its name. ++ ac_cv_have_x="have_x=no";; #( ++ *) ++ # Record where we found X for the cache. ++ ac_cv_have_x="have_x=yes\ ++ ac_x_includes='$ac_x_includes'\ ++ ac_x_libraries='$ac_x_libraries'" ++esac ++fi ++;; #( ++ *) have_x=yes;; ++ esac ++ eval "$ac_cv_have_x" ++fi # $with_x != no ++ ++if test "$have_x" != yes; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $have_x" >&5 ++$as_echo "$have_x" >&6; } ++ no_x=yes ++else ++ # If each of the values was on the command line, it overrides each guess. ++ test "x$x_includes" = xNONE && x_includes=$ac_x_includes ++ test "x$x_libraries" = xNONE && x_libraries=$ac_x_libraries ++ # Update the cache value to reflect the command line values. ++ ac_cv_have_x="have_x=yes\ ++ ac_x_includes='$x_includes'\ ++ ac_x_libraries='$x_libraries'" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: libraries $x_libraries, headers $x_includes" >&5 ++$as_echo "libraries $x_libraries, headers $x_includes" >&6; } ++fi ++ ++if test "$no_x" = yes; then ++ # Not all programs may use this symbol, but it does not hurt to define it. ++ ++$as_echo "@%:@define X_DISPLAY_MISSING 1" >>confdefs.h ++ ++ X_CFLAGS= X_PRE_LIBS= X_LIBS= X_EXTRA_LIBS= ++else ++ if test -n "$x_includes"; then ++ X_CFLAGS="$X_CFLAGS -I$x_includes" ++ fi ++ ++ # It would also be nice to do this for all -L options, not just this one. ++ if test -n "$x_libraries"; then ++ X_LIBS="$X_LIBS -L$x_libraries" ++ # For Solaris; some versions of Sun CC require a space after -R and ++ # others require no space. Words are not sufficient . . . . ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether -R must be followed by a space" >&5 ++$as_echo_n "checking whether -R must be followed by a space... " >&6; } ++ ac_xsave_LIBS=$LIBS; LIBS="$LIBS -R$x_libraries" ++ ac_xsave_c_werror_flag=$ac_c_werror_flag ++ ac_c_werror_flag=yes ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ X_LIBS="$X_LIBS -R$x_libraries" ++else ++ LIBS="$ac_xsave_LIBS -R $x_libraries" ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ X_LIBS="$X_LIBS -R $x_libraries" ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: neither works" >&5 ++$as_echo "neither works" >&6; } ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++ ac_c_werror_flag=$ac_xsave_c_werror_flag ++ LIBS=$ac_xsave_LIBS ++ fi ++ ++ # Check for system-dependent libraries X programs must link with. ++ # Do this before checking for the system-independent R6 libraries ++ # (-lICE), since we may need -lsocket or whatever for X linking. ++ ++ if test "$ISC" = yes; then ++ X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl_s -linet" ++ else ++ # Martyn Johnson says this is needed for Ultrix, if the X ++ # libraries were built with DECnet support. And Karl Berry says ++ # the Alpha needs dnet_stub (dnet does not exist). ++ ac_xsave_LIBS="$LIBS"; LIBS="$LIBS $X_LIBS -lX11" ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char XOpenDisplay (); ++int ++main () ++{ ++return XOpenDisplay (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dnet_ntoa in -ldnet" >&5 ++$as_echo_n "checking for dnet_ntoa in -ldnet... " >&6; } ++if test "${ac_cv_lib_dnet_dnet_ntoa+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-ldnet $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char dnet_ntoa (); ++int ++main () ++{ ++return dnet_ntoa (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_dnet_dnet_ntoa=yes ++else ++ ac_cv_lib_dnet_dnet_ntoa=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dnet_dnet_ntoa" >&5 ++$as_echo "$ac_cv_lib_dnet_dnet_ntoa" >&6; } ++if test "x$ac_cv_lib_dnet_dnet_ntoa" = x""yes; then : ++ X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet" ++fi ++ ++ if test $ac_cv_lib_dnet_dnet_ntoa = no; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for dnet_ntoa in -ldnet_stub" >&5 ++$as_echo_n "checking for dnet_ntoa in -ldnet_stub... " >&6; } ++if test "${ac_cv_lib_dnet_stub_dnet_ntoa+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-ldnet_stub $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char dnet_ntoa (); ++int ++main () ++{ ++return dnet_ntoa (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_dnet_stub_dnet_ntoa=yes ++else ++ ac_cv_lib_dnet_stub_dnet_ntoa=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_dnet_stub_dnet_ntoa" >&5 ++$as_echo "$ac_cv_lib_dnet_stub_dnet_ntoa" >&6; } ++if test "x$ac_cv_lib_dnet_stub_dnet_ntoa" = x""yes; then : ++ X_EXTRA_LIBS="$X_EXTRA_LIBS -ldnet_stub" ++fi ++ ++ fi ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++ LIBS="$ac_xsave_LIBS" ++ ++ # msh@cis.ufl.edu says -lnsl (and -lsocket) are needed for his 386/AT, ++ # to get the SysV transport functions. ++ # Chad R. Larson says the Pyramis MIS-ES running DC/OSx (SVR4) ++ # needs -lnsl. ++ # The nsl library prevents programs from opening the X display ++ # on Irix 5.2, according to T.E. Dickey. ++ # The functions gethostbyname, getservbyname, and inet_addr are ++ # in -lbsd on LynxOS 3.0.1/i386, according to Lars Hecking. ++ ac_fn_c_check_func "$LINENO" "gethostbyname" "ac_cv_func_gethostbyname" ++if test "x$ac_cv_func_gethostbyname" = x""yes; then : ++ ++fi ++ ++ if test $ac_cv_func_gethostbyname = no; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for gethostbyname in -lnsl" >&5 ++$as_echo_n "checking for gethostbyname in -lnsl... " >&6; } ++if test "${ac_cv_lib_nsl_gethostbyname+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lnsl $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char gethostbyname (); ++int ++main () ++{ ++return gethostbyname (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_nsl_gethostbyname=yes ++else ++ ac_cv_lib_nsl_gethostbyname=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_nsl_gethostbyname" >&5 ++$as_echo "$ac_cv_lib_nsl_gethostbyname" >&6; } ++if test "x$ac_cv_lib_nsl_gethostbyname" = x""yes; then : ++ X_EXTRA_LIBS="$X_EXTRA_LIBS -lnsl" ++fi ++ ++ if test $ac_cv_lib_nsl_gethostbyname = no; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for gethostbyname in -lbsd" >&5 ++$as_echo_n "checking for gethostbyname in -lbsd... " >&6; } ++if test "${ac_cv_lib_bsd_gethostbyname+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lbsd $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char gethostbyname (); ++int ++main () ++{ ++return gethostbyname (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_bsd_gethostbyname=yes ++else ++ ac_cv_lib_bsd_gethostbyname=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_bsd_gethostbyname" >&5 ++$as_echo "$ac_cv_lib_bsd_gethostbyname" >&6; } ++if test "x$ac_cv_lib_bsd_gethostbyname" = x""yes; then : ++ X_EXTRA_LIBS="$X_EXTRA_LIBS -lbsd" ++fi ++ ++ fi ++ fi ++ ++ # lieder@skyler.mavd.honeywell.com says without -lsocket, ++ # socket/setsockopt and other routines are undefined under SCO ODT ++ # 2.0. But -lsocket is broken on IRIX 5.2 (and is not necessary ++ # on later versions), says Simon Leinen: it contains gethostby* ++ # variants that don't use the name server (or something). -lsocket ++ # must be given before -lnsl if both are needed. We assume that ++ # if connect needs -lnsl, so does gethostbyname. ++ ac_fn_c_check_func "$LINENO" "connect" "ac_cv_func_connect" ++if test "x$ac_cv_func_connect" = x""yes; then : ++ ++fi ++ ++ if test $ac_cv_func_connect = no; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for connect in -lsocket" >&5 ++$as_echo_n "checking for connect in -lsocket... " >&6; } ++if test "${ac_cv_lib_socket_connect+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lsocket $X_EXTRA_LIBS $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char connect (); ++int ++main () ++{ ++return connect (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_socket_connect=yes ++else ++ ac_cv_lib_socket_connect=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_socket_connect" >&5 ++$as_echo "$ac_cv_lib_socket_connect" >&6; } ++if test "x$ac_cv_lib_socket_connect" = x""yes; then : ++ X_EXTRA_LIBS="-lsocket $X_EXTRA_LIBS" ++fi ++ ++ fi ++ ++ # Guillermo Gomez says -lposix is necessary on A/UX. ++ ac_fn_c_check_func "$LINENO" "remove" "ac_cv_func_remove" ++if test "x$ac_cv_func_remove" = x""yes; then : ++ ++fi ++ ++ if test $ac_cv_func_remove = no; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for remove in -lposix" >&5 ++$as_echo_n "checking for remove in -lposix... " >&6; } ++if test "${ac_cv_lib_posix_remove+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lposix $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char remove (); ++int ++main () ++{ ++return remove (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_posix_remove=yes ++else ++ ac_cv_lib_posix_remove=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_posix_remove" >&5 ++$as_echo "$ac_cv_lib_posix_remove" >&6; } ++if test "x$ac_cv_lib_posix_remove" = x""yes; then : ++ X_EXTRA_LIBS="$X_EXTRA_LIBS -lposix" ++fi ++ ++ fi ++ ++ # BSDI BSD/OS 2.1 needs -lipc for XOpenDisplay. ++ ac_fn_c_check_func "$LINENO" "shmat" "ac_cv_func_shmat" ++if test "x$ac_cv_func_shmat" = x""yes; then : ++ ++fi ++ ++ if test $ac_cv_func_shmat = no; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for shmat in -lipc" >&5 ++$as_echo_n "checking for shmat in -lipc... " >&6; } ++if test "${ac_cv_lib_ipc_shmat+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lipc $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char shmat (); ++int ++main () ++{ ++return shmat (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_ipc_shmat=yes ++else ++ ac_cv_lib_ipc_shmat=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_ipc_shmat" >&5 ++$as_echo "$ac_cv_lib_ipc_shmat" >&6; } ++if test "x$ac_cv_lib_ipc_shmat" = x""yes; then : ++ X_EXTRA_LIBS="$X_EXTRA_LIBS -lipc" ++fi ++ ++ fi ++ fi ++ ++ # Check for libraries that X11R6 Xt/Xaw programs need. ++ ac_save_LDFLAGS=$LDFLAGS ++ test -n "$x_libraries" && LDFLAGS="$LDFLAGS -L$x_libraries" ++ # SM needs ICE to (dynamically) link under SunOS 4.x (so we have to ++ # check for ICE first), but we must link in the order -lSM -lICE or ++ # we get undefined symbols. So assume we have SM if we have ICE. ++ # These have to be linked with before -lX11, unlike the other ++ # libraries we check for below, so use a different variable. ++ # John Interrante, Karl Berry ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for IceConnectionNumber in -lICE" >&5 ++$as_echo_n "checking for IceConnectionNumber in -lICE... " >&6; } ++if test "${ac_cv_lib_ICE_IceConnectionNumber+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lICE $X_EXTRA_LIBS $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char IceConnectionNumber (); ++int ++main () ++{ ++return IceConnectionNumber (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_ICE_IceConnectionNumber=yes ++else ++ ac_cv_lib_ICE_IceConnectionNumber=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_ICE_IceConnectionNumber" >&5 ++$as_echo "$ac_cv_lib_ICE_IceConnectionNumber" >&6; } ++if test "x$ac_cv_lib_ICE_IceConnectionNumber" = x""yes; then : ++ X_PRE_LIBS="$X_PRE_LIBS -lSM -lICE" ++fi ++ ++ LDFLAGS=$ac_save_LDFLAGS ++ ++fi ++ ++ac_header_dirent=no ++for ac_hdr in dirent.h sys/ndir.h sys/dir.h ndir.h; do ++ as_ac_Header=`$as_echo "ac_cv_header_dirent_$ac_hdr" | $as_tr_sh` ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_hdr that defines DIR" >&5 ++$as_echo_n "checking for $ac_hdr that defines DIR... " >&6; } ++if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then : ++ $as_echo_n "(cached) " >&6 ++else ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++#include <$ac_hdr> ++ ++int ++main () ++{ ++if ((DIR *) 0) ++return 0; ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ eval "$as_ac_Header=yes" ++else ++ eval "$as_ac_Header=no" ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++fi ++eval ac_res=\$$as_ac_Header ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_res" >&5 ++$as_echo "$ac_res" >&6; } ++eval as_val=\$$as_ac_Header ++ if test "x$as_val" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define `$as_echo "HAVE_$ac_hdr" | $as_tr_cpp` 1 ++_ACEOF ++ ++ac_header_dirent=$ac_hdr; break ++fi ++ ++done ++# Two versions of opendir et al. are in -ldir and -lx on SCO Xenix. ++if test $ac_header_dirent = dirent.h; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing opendir" >&5 ++$as_echo_n "checking for library containing opendir... " >&6; } ++if test "${ac_cv_search_opendir+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_func_search_save_LIBS=$LIBS ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char opendir (); ++int ++main () ++{ ++return opendir (); ++ ; ++ return 0; ++} ++_ACEOF ++for ac_lib in '' dir; do ++ if test -z "$ac_lib"; then ++ ac_res="none required" ++ else ++ ac_res=-l$ac_lib ++ LIBS="-l$ac_lib $ac_func_search_save_LIBS" ++ fi ++ if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_search_opendir=$ac_res ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext ++ if test "${ac_cv_search_opendir+set}" = set; then : ++ break ++fi ++done ++if test "${ac_cv_search_opendir+set}" = set; then : ++ ++else ++ ac_cv_search_opendir=no ++fi ++rm conftest.$ac_ext ++LIBS=$ac_func_search_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_opendir" >&5 ++$as_echo "$ac_cv_search_opendir" >&6; } ++ac_res=$ac_cv_search_opendir ++if test "$ac_res" != no; then : ++ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS" ++ ++fi ++ ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for library containing opendir" >&5 ++$as_echo_n "checking for library containing opendir... " >&6; } ++if test "${ac_cv_search_opendir+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_func_search_save_LIBS=$LIBS ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char opendir (); ++int ++main () ++{ ++return opendir (); ++ ; ++ return 0; ++} ++_ACEOF ++for ac_lib in '' x; do ++ if test -z "$ac_lib"; then ++ ac_res="none required" ++ else ++ ac_res=-l$ac_lib ++ LIBS="-l$ac_lib $ac_func_search_save_LIBS" ++ fi ++ if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_search_opendir=$ac_res ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext ++ if test "${ac_cv_search_opendir+set}" = set; then : ++ break ++fi ++done ++if test "${ac_cv_search_opendir+set}" = set; then : ++ ++else ++ ac_cv_search_opendir=no ++fi ++rm conftest.$ac_ext ++LIBS=$ac_func_search_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_search_opendir" >&5 ++$as_echo "$ac_cv_search_opendir" >&6; } ++ac_res=$ac_cv_search_opendir ++if test "$ac_res" != no; then : ++ test "$ac_res" = "none required" || LIBS="$ac_res $LIBS" ++ ++fi ++ ++fi ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for ANSI C header files" >&5 ++$as_echo_n "checking for ANSI C header files... " >&6; } ++if test "${ac_cv_header_stdc+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++#include ++#include ++#include ++ ++int ++main () ++{ ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_header_stdc=yes ++else ++ ac_cv_header_stdc=no ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++ ++if test $ac_cv_header_stdc = yes; then ++ # SunOS 4.x string.h does not declare mem*, contrary to ANSI. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++ ++_ACEOF ++if (eval "$ac_cpp conftest.$ac_ext") 2>&5 | ++ $EGREP "memchr" >/dev/null 2>&1; then : ++ ++else ++ ac_cv_header_stdc=no ++fi ++rm -f conftest* ++ ++fi ++ ++if test $ac_cv_header_stdc = yes; then ++ # ISC 2.0.2 stdlib.h does not declare free, contrary to ANSI. ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++ ++_ACEOF ++if (eval "$ac_cpp conftest.$ac_ext") 2>&5 | ++ $EGREP "free" >/dev/null 2>&1; then : ++ ++else ++ ac_cv_header_stdc=no ++fi ++rm -f conftest* ++ ++fi ++ ++if test $ac_cv_header_stdc = yes; then ++ # /bin/cc in Irix-4.0.5 gets non-ANSI ctype macros unless using -ansi. ++ if test "$cross_compiling" = yes; then : ++ : ++else ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++#include ++#if ((' ' & 0x0FF) == 0x020) ++# define ISLOWER(c) ('a' <= (c) && (c) <= 'z') ++# define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) ++#else ++# define ISLOWER(c) \ ++ (('a' <= (c) && (c) <= 'i') \ ++ || ('j' <= (c) && (c) <= 'r') \ ++ || ('s' <= (c) && (c) <= 'z')) ++# define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c)) ++#endif ++ ++#define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) ++int ++main () ++{ ++ int i; ++ for (i = 0; i < 256; i++) ++ if (XOR (islower (i), ISLOWER (i)) ++ || toupper (i) != TOUPPER (i)) ++ return 2; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_run "$LINENO"; then : ++ ++else ++ ac_cv_header_stdc=no ++fi ++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \ ++ conftest.$ac_objext conftest.beam conftest.$ac_ext ++fi ++ ++fi ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_header_stdc" >&5 ++$as_echo "$ac_cv_header_stdc" >&6; } ++if test $ac_cv_header_stdc = yes; then ++ ++$as_echo "@%:@define STDC_HEADERS 1" >>confdefs.h ++ ++fi ++ ++ ++for ac_header in unistd.h TargetConfig.h ++do : ++ as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh` ++ac_fn_c_check_header_mongrel "$LINENO" "$ac_header" "$as_ac_Header" "$ac_includes_default" ++eval as_val=\$$as_ac_Header ++ if test "x$as_val" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1 ++_ACEOF ++ ++fi ++ ++done ++ ++#as# AC_CHECK_HEADERS([arpa/inet.h fcntl.h float.h limits.h \ ++#as# malloc.h memory.h netdb.h netinet/in.h \ ++#as# shadow.h stddef.h stdint.h stdlib.h string.h strings.h \ ++#as# sys/file.h sys/ioctl.h sys/param.h sys/socket.h sys/time.h \ ++#as# termios.h unistd.h]) ++ ++# Checks for typedefs, structures, and compiler characteristics. ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for an ANSI C-conforming const" >&5 ++$as_echo_n "checking for an ANSI C-conforming const... " >&6; } ++if test "${ac_cv_c_const+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++int ++main () ++{ ++/* FIXME: Include the comments suggested by Paul. */ ++#ifndef __cplusplus ++ /* Ultrix mips cc rejects this. */ ++ typedef int charset[2]; ++ const charset cs; ++ /* SunOS 4.1.1 cc rejects this. */ ++ char const *const *pcpcc; ++ char **ppc; ++ /* NEC SVR4.0.2 mips cc rejects this. */ ++ struct point {int x, y;}; ++ static struct point const zero = {0,0}; ++ /* AIX XL C 1.02.0.0 rejects this. ++ It does not let you subtract one const X* pointer from another in ++ an arm of an if-expression whose if-part is not a constant ++ expression */ ++ const char *g = "string"; ++ pcpcc = &g + (g ? g-g : 0); ++ /* HPUX 7.0 cc rejects these. */ ++ ++pcpcc; ++ ppc = (char**) pcpcc; ++ pcpcc = (char const *const *) ppc; ++ { /* SCO 3.2v4 cc rejects this. */ ++ char *t; ++ char const *s = 0 ? (char *) 0 : (char const *) 0; ++ ++ *t++ = 0; ++ if (s) return 0; ++ } ++ { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ ++ int x[] = {25, 17}; ++ const int *foo = &x[0]; ++ ++foo; ++ } ++ { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ ++ typedef const int *iptr; ++ iptr p = 0; ++ ++p; ++ } ++ { /* AIX XL C 1.02.0.0 rejects this saying ++ "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ ++ struct s { int j; const int *ap[3]; }; ++ struct s *b; b->j = 5; ++ } ++ { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ ++ const int foo = 10; ++ if (!foo) return 0; ++ } ++ return !cs[0] && !zero.x; ++#endif ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_c_const=yes ++else ++ ac_cv_c_const=no ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_c_const" >&5 ++$as_echo "$ac_cv_c_const" >&6; } ++if test $ac_cv_c_const = no; then ++ ++$as_echo "@%:@define const /**/" >>confdefs.h ++ ++fi ++ ++#as# AC_HEADER_STDBOOL ++#as# AC_TYPE_UID_T ++#as# AC_C_INLINE ++#as# AC_TYPE_INT32_T ++ac_fn_c_check_type "$LINENO" "pid_t" "ac_cv_type_pid_t" "$ac_includes_default" ++if test "x$ac_cv_type_pid_t" = x""yes; then : ++ ++else ++ ++cat >>confdefs.h <<_ACEOF ++@%:@define pid_t int ++_ACEOF ++ ++fi ++ ++ac_fn_c_check_type "$LINENO" "size_t" "ac_cv_type_size_t" "$ac_includes_default" ++if test "x$ac_cv_type_size_t" = x""yes; then : ++ ++else ++ ++cat >>confdefs.h <<_ACEOF ++@%:@define size_t unsigned int ++_ACEOF ++ ++fi ++ ++#as# AC_STRUCT_TIMEZONE ++#as# AC_TYPE_UINT32_T ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether struct tm is in sys/time.h or time.h" >&5 ++$as_echo_n "checking whether struct tm is in sys/time.h or time.h... " >&6; } ++if test "${ac_cv_struct_tm+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++#include ++ ++int ++main () ++{ ++struct tm tm; ++ int *p = &tm.tm_sec; ++ return !p; ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_struct_tm=time.h ++else ++ ac_cv_struct_tm=sys/time.h ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_struct_tm" >&5 ++$as_echo "$ac_cv_struct_tm" >&6; } ++if test $ac_cv_struct_tm = sys/time.h; then ++ ++$as_echo "@%:@define TM_IN_SYS_TIME 1" >>confdefs.h ++ ++fi ++ ++ ++#as# AC_CHECK_TYPES([ptrdiff_t]) ++ ++ ++ ++#AC_FUNC_ERROR_AT_LINE ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether getpgrp requires zero arguments" >&5 ++$as_echo_n "checking whether getpgrp requires zero arguments... " >&6; } ++if test "${ac_cv_func_getpgrp_void+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ # Use it with a single arg. ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++$ac_includes_default ++int ++main () ++{ ++getpgrp (0); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_compile "$LINENO"; then : ++ ac_cv_func_getpgrp_void=no ++else ++ ac_cv_func_getpgrp_void=yes ++fi ++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_func_getpgrp_void" >&5 ++$as_echo "$ac_cv_func_getpgrp_void" >&6; } ++if test $ac_cv_func_getpgrp_void = yes; then ++ ++$as_echo "@%:@define GETPGRP_VOID 1" >>confdefs.h ++ ++fi ++ ++for ac_func in strftime ++do : ++ ac_fn_c_check_func "$LINENO" "strftime" "ac_cv_func_strftime" ++if test "x$ac_cv_func_strftime" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define HAVE_STRFTIME 1 ++_ACEOF ++ ++else ++ # strftime is in -lintl on SCO UNIX. ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for strftime in -lintl" >&5 ++$as_echo_n "checking for strftime in -lintl... " >&6; } ++if test "${ac_cv_lib_intl_strftime+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lintl $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char strftime (); ++int ++main () ++{ ++return strftime (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_intl_strftime=yes ++else ++ ac_cv_lib_intl_strftime=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_intl_strftime" >&5 ++$as_echo "$ac_cv_lib_intl_strftime" >&6; } ++if test "x$ac_cv_lib_intl_strftime" = x""yes; then : ++ $as_echo "@%:@define HAVE_STRFTIME 1" >>confdefs.h ++ ++LIBS="-lintl $LIBS" ++fi ++ ++fi ++done ++ ++for ac_header in vfork.h ++do : ++ ac_fn_c_check_header_mongrel "$LINENO" "vfork.h" "ac_cv_header_vfork_h" "$ac_includes_default" ++if test "x$ac_cv_header_vfork_h" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define HAVE_VFORK_H 1 ++_ACEOF ++ ++fi ++ ++done ++ ++for ac_func in fork vfork ++do : ++ as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh` ++ac_fn_c_check_func "$LINENO" "$ac_func" "$as_ac_var" ++eval as_val=\$$as_ac_var ++ if test "x$as_val" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define `$as_echo "HAVE_$ac_func" | $as_tr_cpp` 1 ++_ACEOF ++ ++fi ++done ++ ++if test "x$ac_cv_func_fork" = xyes; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for working fork" >&5 ++$as_echo_n "checking for working fork... " >&6; } ++if test "${ac_cv_func_fork_works+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test "$cross_compiling" = yes; then : ++ ac_cv_func_fork_works=cross ++else ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++$ac_includes_default ++int ++main () ++{ ++ ++ /* By Ruediger Kuhlmann. */ ++ return fork () < 0; ++ ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_run "$LINENO"; then : ++ ac_cv_func_fork_works=yes ++else ++ ac_cv_func_fork_works=no ++fi ++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \ ++ conftest.$ac_objext conftest.beam conftest.$ac_ext ++fi ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_func_fork_works" >&5 ++$as_echo "$ac_cv_func_fork_works" >&6; } ++ ++else ++ ac_cv_func_fork_works=$ac_cv_func_fork ++fi ++if test "x$ac_cv_func_fork_works" = xcross; then ++ case $host in ++ *-*-amigaos* | *-*-msdosdjgpp*) ++ # Override, as these systems have only a dummy fork() stub ++ ac_cv_func_fork_works=no ++ ;; ++ *) ++ ac_cv_func_fork_works=yes ++ ;; ++ esac ++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: result $ac_cv_func_fork_works guessed because of cross compilation" >&5 ++$as_echo "$as_me: WARNING: result $ac_cv_func_fork_works guessed because of cross compilation" >&2;} ++fi ++ac_cv_func_vfork_works=$ac_cv_func_vfork ++if test "x$ac_cv_func_vfork" = xyes; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for working vfork" >&5 ++$as_echo_n "checking for working vfork... " >&6; } ++if test "${ac_cv_func_vfork_works+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test "$cross_compiling" = yes; then : ++ ac_cv_func_vfork_works=cross ++else ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++/* Thanks to Paul Eggert for this test. */ ++$ac_includes_default ++#include ++#ifdef HAVE_VFORK_H ++# include ++#endif ++/* On some sparc systems, changes by the child to local and incoming ++ argument registers are propagated back to the parent. The compiler ++ is told about this with #include , but some compilers ++ (e.g. gcc -O) don't grok . Test for this by using a ++ static variable whose address is put into a register that is ++ clobbered by the vfork. */ ++static void ++#ifdef __cplusplus ++sparc_address_test (int arg) ++# else ++sparc_address_test (arg) int arg; ++#endif ++{ ++ static pid_t child; ++ if (!child) { ++ child = vfork (); ++ if (child < 0) { ++ perror ("vfork"); ++ _exit(2); ++ } ++ if (!child) { ++ arg = getpid(); ++ write(-1, "", 0); ++ _exit (arg); ++ } ++ } ++} ++ ++int ++main () ++{ ++ pid_t parent = getpid (); ++ pid_t child; ++ ++ sparc_address_test (0); ++ ++ child = vfork (); ++ ++ if (child == 0) { ++ /* Here is another test for sparc vfork register problems. This ++ test uses lots of local variables, at least as many local ++ variables as main has allocated so far including compiler ++ temporaries. 4 locals are enough for gcc 1.40.3 on a Solaris ++ 4.1.3 sparc, but we use 8 to be safe. A buggy compiler should ++ reuse the register of parent for one of the local variables, ++ since it will think that parent can't possibly be used any more ++ in this routine. Assigning to the local variable will thus ++ munge parent in the parent process. */ ++ pid_t ++ p = getpid(), p1 = getpid(), p2 = getpid(), p3 = getpid(), ++ p4 = getpid(), p5 = getpid(), p6 = getpid(), p7 = getpid(); ++ /* Convince the compiler that p..p7 are live; otherwise, it might ++ use the same hardware register for all 8 local variables. */ ++ if (p != p1 || p != p2 || p != p3 || p != p4 ++ || p != p5 || p != p6 || p != p7) ++ _exit(1); ++ ++ /* On some systems (e.g. IRIX 3.3), vfork doesn't separate parent ++ from child file descriptors. If the child closes a descriptor ++ before it execs or exits, this munges the parent's descriptor ++ as well. Test for this by closing stdout in the child. */ ++ _exit(close(fileno(stdout)) != 0); ++ } else { ++ int status; ++ struct stat st; ++ ++ while (wait(&status) != child) ++ ; ++ return ( ++ /* Was there some problem with vforking? */ ++ child < 0 ++ ++ /* Did the child fail? (This shouldn't happen.) */ ++ || status ++ ++ /* Did the vfork/compiler bug occur? */ ++ || parent != getpid() ++ ++ /* Did the file descriptor bug occur? */ ++ || fstat(fileno(stdout), &st) != 0 ++ ); ++ } ++} ++_ACEOF ++if ac_fn_c_try_run "$LINENO"; then : ++ ac_cv_func_vfork_works=yes ++else ++ ac_cv_func_vfork_works=no ++fi ++rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext \ ++ conftest.$ac_objext conftest.beam conftest.$ac_ext ++fi ++ ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_func_vfork_works" >&5 ++$as_echo "$ac_cv_func_vfork_works" >&6; } ++ ++fi; ++if test "x$ac_cv_func_fork_works" = xcross; then ++ ac_cv_func_vfork_works=$ac_cv_func_vfork ++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: result $ac_cv_func_vfork_works guessed because of cross compilation" >&5 ++$as_echo "$as_me: WARNING: result $ac_cv_func_vfork_works guessed because of cross compilation" >&2;} ++fi ++ ++if test "x$ac_cv_func_vfork_works" = xyes; then ++ ++$as_echo "@%:@define HAVE_WORKING_VFORK 1" >>confdefs.h ++ ++else ++ ++$as_echo "@%:@define vfork fork" >>confdefs.h ++ ++fi ++if test "x$ac_cv_func_fork_works" = xyes; then ++ ++$as_echo "@%:@define HAVE_WORKING_FORK 1" >>confdefs.h ++ ++fi ++ ++for ac_func in vprintf ++do : ++ ac_fn_c_check_func "$LINENO" "vprintf" "ac_cv_func_vprintf" ++if test "x$ac_cv_func_vprintf" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define HAVE_VPRINTF 1 ++_ACEOF ++ ++ac_fn_c_check_func "$LINENO" "_doprnt" "ac_cv_func__doprnt" ++if test "x$ac_cv_func__doprnt" = x""yes; then : ++ ++$as_echo "@%:@define HAVE_DOPRNT 1" >>confdefs.h ++ ++fi ++ ++fi ++done ++ ++ ++#as# AC_FUNC_MALLOC ++#as# AC_FUNC_MKTIME ++#as# AC_FUNC_REALLOC ++#as# AC_FUNC_STRTOD ++ ++for ac_func in memmove ++do : ++ ac_fn_c_check_func "$LINENO" "memmove" "ac_cv_func_memmove" ++if test "x$ac_cv_func_memmove" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define HAVE_MEMMOVE 1 ++_ACEOF ++ ++fi ++done ++ ++#as# AC_CHECK_FUNCS([alarm atexit bzero dup2 floor \ ++#as# getcwd gethostbyname getspnam gettimeofday inet_ntoa \ ++#as# localtime_r memmove memset mkdir modf pow regcomp rint \ ++#as# select socket sqrt strchr strcspn strdup strerror strpbrk \ ++#as# strrchr strspn strstr strtol]) ++ ++if test "${with_x}" != "no" ; then ++ ++ CFLAGS="$CFLAGS $X_CFLAGS" ++if test "`uname`" != "IRIX64" && test "`uname`" != "IRIX" ; then ++ XLIB="$X_LIBS -lX11 $X_EXTRA_LIBS" ++else ++ XLIB="-lX11 $X_EXTRA_LIBS" ++fi ++ ++ ++ac_fn_c_check_header_mongrel "$LINENO" "X11/Xlib.h" "ac_cv_header_X11_Xlib_h" "$ac_includes_default" ++if test "x$ac_cv_header_X11_Xlib_h" = x""yes; then : ++ ++ $as_echo "@%:@define PLD_xwin 1" >>confdefs.h ++ ++ ++else ++ ++ echo "" ++ echo "X11 graphics have been selected but no X11 header files" ++ echo "have been found." ++ echo "" ++ echo "This error usually happens on Linux/MacOSX distributions" ++ echo "where the optional X11 development files have not been installed." ++ echo "On Linux RPM systems this package is usually called something" ++ echo "like xorg-x11-proto-devel whereas on Debian/Ubuntu it may" ++ echo "be called x-dev. On MacOSX installation DVDs the X11 files" ++ echo "can usually be found as an explicitly named optional" ++ echo "installation." ++ echo "" ++ echo "After installing the X11 development files you should do a" ++ echo "'make clean' and perform the configure stage again." ++ echo "" ++ echo "Alternatively, to install EMBOSS without X11 support, you can add" ++ echo "the --without-x switch to the configure command." ++ echo "" ++ exit $? ++ ++fi ++ ++ ++ ++ ++fi ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for socket in -lc" >&5 ++$as_echo_n "checking for socket in -lc... " >&6; } ++if test "${ac_cv_lib_c_socket+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lc $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char socket (); ++int ++main () ++{ ++return socket (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_c_socket=yes ++else ++ ac_cv_lib_c_socket=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_c_socket" >&5 ++$as_echo "$ac_cv_lib_c_socket" >&6; } ++if test "x$ac_cv_lib_c_socket" = x""yes; then : ++ LIBS="$LIBS" ++else ++ LIBS="$LIBS -lsocket" ++fi ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for main in -lm" >&5 ++$as_echo_n "checking for main in -lm... " >&6; } ++if test "${ac_cv_lib_m_main+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lm $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++ ++int ++main () ++{ ++return main (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_m_main=yes ++else ++ ac_cv_lib_m_main=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_m_main" >&5 ++$as_echo "$ac_cv_lib_m_main" >&6; } ++if test "x$ac_cv_lib_m_main" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define HAVE_LIBM 1 ++_ACEOF ++ ++ LIBS="-lm $LIBS" ++ ++fi ++ ++ ++if test "`uname`" = "FreeBSD" && ${with_pngdriver} != "no"; then ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for main in -liconv" >&5 ++$as_echo_n "checking for main in -liconv... " >&6; } ++if test "${ac_cv_lib_iconv_main+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-liconv $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++ ++int ++main () ++{ ++return main (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_iconv_main=yes ++else ++ ac_cv_lib_iconv_main=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_iconv_main" >&5 ++$as_echo "$ac_cv_lib_iconv_main" >&6; } ++if test "x$ac_cv_lib_iconv_main" = x""yes; then : ++ LIBS="$LIBS" ++else ++ LIBS="-liconv $LIBS" ++fi ++ ++fi ++ ++ if false; then ++ AMPNG_TRUE= ++ AMPNG_FALSE='#' ++else ++ AMPNG_TRUE='#' ++ AMPNG_FALSE= ++fi ++ ++ if false; then ++ AMPDF_TRUE= ++ AMPDF_FALSE='#' ++else ++ AMPDF_TRUE='#' ++ AMPDF_FALSE= ++fi ++ ++ ++# ++# Handle general setup e.g. documentation directory ++# ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if docroot is given" >&5 ++$as_echo_n "checking if docroot is given... " >&6; } ++ ++@%:@ Check whether --with-docroot was given. ++if test "${with_docroot+set}" = set; then : ++ withval=$with_docroot; if test "$withval" != no ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ CPPFLAGS="$CPPFLAGS -DDOC_ROOT=\\\"$withval\\\"" ++fi ++else ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ ++fi ++ ++ ++ ++ ++# GCC profiling ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if gcc profiling is selected" >&5 ++$as_echo_n "checking if gcc profiling is selected... " >&6; } ++ ++@%:@ Check whether --with-gccprofile was given. ++if test "${with_gccprofile+set}" = set; then : ++ withval=$with_gccprofile; if test "$withval" != no ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ CFLAGS="$CFLAGS -g -pg" ++ LDFLAGS="$LDFLAGS -pg" ++fi ++else ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ ++fi ++ ++ ++ ++ ++# ++# Handle user hints ++# ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if java include directory given" >&5 ++$as_echo_n "checking if java include directory given... " >&6; } ++ ++@%:@ Check whether --with-java was given. ++if test "${with_java+set}" = set; then : ++ withval=$with_java; if test "$withval" != no ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ JALT_HOME="$withval" ++ if test -d $withval ; then ++ echo "Java directory $withval exists" ++ else ++ echo "Java directory $withval does not exist" ++ exit 0 ++ fi ++ ++ JALT_HOME="${JALT_HOME} -DHAVE_JAVA" ++ # Extract the first word of "javac", so it can be a program name with args. ++set dummy javac; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_havejavac+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$havejavac"; then ++ ac_cv_prog_havejavac="$havejavac" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_havejavac=""yes"" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++ test -z "$ac_cv_prog_havejavac" && ac_cv_prog_havejavac=""no"" ++fi ++fi ++havejavac=$ac_cv_prog_havejavac ++if test -n "$havejavac"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $havejavac" >&5 ++$as_echo "$havejavac" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ if test "${havejavac}" != yes ; then ++ echo "Error: Either JAVA not installed or 'javac' not in your PATH" ++ exit 1 ++ fi ++ if test -f /etc/debian_release || test -f /etc/debian_version ; then ++ CFLAGS="$CFLAGS -DDEBIAN" ++ fi ++ JAVA_OK=yes ++ ++else ++ JAVA_OK=no ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ ++fi ++else ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ ++ ++fi ++ ++ ++if test -n "${JALT_HOME}" ++then ++ CFLAGS="$CFLAGS -I${JALT_HOME}" ++fi ++ ++ ++# ++# Handle user hints ++# ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if java OS include directory given" >&5 ++$as_echo_n "checking if java OS include directory given... " >&6; } ++ ++@%:@ Check whether --with-javaos was given. ++if test "${with_javaos+set}" = set; then : ++ withval=$with_javaos; if test "$withval" != no ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ if test -d $withval ; then ++ echo "Javaos directory $withval exists" ++ else ++ echo "Javaos directory $withval does not exist" ++ exit 0 ++ fi ++ ALT_HOMEOS="$withval" ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++else ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ if test "$JAVA_OK" = "yes" ; then ++ echo "Error: --with-java=dir unspecified" ++ exit 0 ++ fi ++ ++fi ++ ++ ++if test -n "${ALT_HOMEOS}" ++then ++ CFLAGS="$CFLAGS -I${ALT_HOMEOS}" ++fi ++ ++ ++ ++# ++# Handle user hints ++# ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether to look for pdf support" >&5 ++$as_echo_n "checking whether to look for pdf support... " >&6; } ++ ++@%:@ Check whether --with-hpdf was given. ++if test "${with_hpdf+set}" = set; then : ++ withval=$with_hpdf; if test "$withval" != no ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ ALT_HOME="$withval" ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++else ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ALT_HOME=/usr ++ ++fi ++ ++ ++ ++# ++# Locate hpdf ++# ++if test -d "${ALT_HOME}" ++then ++ ++# ++# Keep a copy if it fails ++# ++ ALT_LDFLAGS="$LDFLAGS" ++ ALT_CPPFLAGS="$CPPFLAGS" ++ ++# ++# Set ++# ++ LDFLAGS="${LDFLAGS} -L${ALT_HOME}/lib" ++ CPPFLAGS="$CPPFLAGS -I$ALT_HOME/include" ++ ++# ++# Check for libharu in ALT_HOME ++# ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for HPDF_New in -lhpdf" >&5 ++$as_echo_n "checking for HPDF_New in -lhpdf... " >&6; } ++if test "${ac_cv_lib_hpdf_HPDF_New+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lhpdf -L${ALT_HOME}/lib $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char HPDF_New (); ++int ++main () ++{ ++return HPDF_New (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_hpdf_HPDF_New=yes ++else ++ ac_cv_lib_hpdf_HPDF_New=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_hpdf_HPDF_New" >&5 ++$as_echo "$ac_cv_lib_hpdf_HPDF_New" >&6; } ++if test "x$ac_cv_lib_hpdf_HPDF_New" = x""yes; then : ++ CHECK=1 ++else ++ CHECK=0 ++fi ++ ++# ++# ++# If everything found okay then proceed to include png driver in config. ++# ++ if test $CHECK = "1" ; then ++ LIBS="$LIBS -lhpdf" ++ ++ if test "`uname`" = "SunOS"; then ++ LDFLAGS="$LDFLAGS -R$ALT_HOME/lib" ++ fi ++ ++ $as_echo "@%:@define PLD_pdf 1" >>confdefs.h ++ ++ if true; then ++ AMPDF_TRUE= ++ AMPDF_FALSE='#' ++else ++ AMPDF_TRUE='#' ++ AMPDF_FALSE= ++fi ++ ++ echo PDF support found ++ if test $ALT_HOME = "/usr" ; then ++ LDFLAGS="$ALT_LDFLAGS" ++ CPPFLAGS="$ALT_CPPFLAGS" ++ fi ++ else ++# ++# If not okay then reset FLAGS. ++# ++ if false; then ++ AMPDF_TRUE= ++ AMPDF_FALSE='#' ++else ++ AMPDF_TRUE='#' ++ AMPDF_FALSE= ++fi ++ ++ LDFLAGS="$ALT_LDFLAGS" ++ CPPFLAGS="$ALT_CPPFLAGS" ++ echo "No pdf support (libhpdf) found." ++ fi ++ ++else ++ if test $withval != "no"; then ++ echo "Directory $ALT_HOME does not exist" ++ exit 0 ++ fi ++fi ++ ++ ++ ++ ++PLPLOT_LIBS="" ++OLIBS="$LIBS" ++LIBS="" ++ ++check_plplot_ok=yes ++check_plplotpkg_ok=no ++if test x = x && test x = x; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for PLPlot pkg-config info" >&5 ++$as_echo_n "checking for PLPlot pkg-config info... " >&6; } ++ if pkg-config --exists plplotd; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ PLPLOT_CFLAGS=`pkg-config --cflags plplotd` ++ PLPLOT_LIBS=`pkg-config --libs plplotd` ++ ++$as_echo "@%:@define PLPLOT_H \"plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "@%:@define PLPLOTP_H \"plplotP.h\"" >>confdefs.h ++ ++ check_plplotpkg_ok=yes ++ else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ fi ++fi ++if test x$check_plplotpkg_ok = xno; then ++ if test x = x; then ++ ac_fn_c_check_header_mongrel "$LINENO" "plplot.h" "ac_cv_header_plplot_h" "$ac_includes_default" ++if test "x$ac_cv_header_plplot_h" = x""yes; then : ++ check_plplothead_ok=yes ++else ++ check_plplothead_ok=no ++fi ++ ++ ++ if test x$check_plplothead_ok = xyes; then ++ ++$as_echo "@%:@define PLPLOT_H \"plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "@%:@define PLPLOTP_H \"plplotP.h\"" >>confdefs.h ++ ++ else ++ ac_fn_c_check_header_mongrel "$LINENO" "plplot/plplot.h" "ac_cv_header_plplot_plplot_h" "$ac_includes_default" ++if test "x$ac_cv_header_plplot_plplot_h" = x""yes; then : ++ check_plplothead_ok=yes ++else ++ check_plplothead_ok=no ++fi ++ ++ ++ if test x$check_plplothead_ok = xyes; then ++ ++$as_echo "@%:@define PLPLOT_H \"plplot/plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "@%:@define PLPLOTP_H \"plplot/plplotP.h\"" >>confdefs.h ++ ++ else ++ check_plplot_ok=no ++ fi ++ fi ++ else ++ ac_fn_c_check_header_mongrel "$LINENO" "/plplot.h" "ac_cv_header__plplot_h" "$ac_includes_default" ++if test "x$ac_cv_header__plplot_h" = x""yes; then : ++ check_plplothead_ok=yes ++else ++ check_plplothead_ok=no ++fi ++ ++ ++ if test x$check_plplothead_ok = xyes; then ++ ++$as_echo "@%:@define PLPLOT_H \"plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "@%:@define PLPLOTP_H \"plplotP.h\"" >>confdefs.h ++ ++ PLPLOT_CFLAGS="-I" ++ else ++ check_plplot_ok=no ++ fi ++ fi ++ if test x = x; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 ++$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } ++if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lplplotd $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char c_plinit (); ++int ++main () ++{ ++return c_plinit (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_plplotd_c_plinit=yes ++else ++ ac_cv_lib_plplotd_c_plinit=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 ++$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } ++if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define HAVE_LIBPLPLOTD 1 ++_ACEOF ++ ++ LIBS="-lplplotd $LIBS" ++ ++else ++ check_plplot_ok=no ++fi ++ ++ PLPLOT_LIBS="-lplplotd" ++ else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 ++$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } ++if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lplplotd -L $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char c_plinit (); ++int ++main () ++{ ++return c_plinit (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_plplotd_c_plinit=yes ++else ++ ac_cv_lib_plplotd_c_plinit=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 ++$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } ++if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define HAVE_LIBPLPLOTD 1 ++_ACEOF ++ ++ LIBS="-lplplotd $LIBS" ++ ++else ++ check_plplot_ok=no ++fi ++ ++ PLPLOT_LIBS="-L -lplplotd" ++ fi ++fi ++ ++LIBS="$OLIBS" ++if test x$check_plplot_ok = xyes; then ++ ++ ++ ++$as_echo "@%:@define HAVE_PLPLOT 1" >>confdefs.h ++ ++fi ++ ++ ++# ++# Handle user hints ++# ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if png driver is wanted" >&5 ++$as_echo_n "checking if png driver is wanted... " >&6; } ++ ++@%:@ Check whether --with-pngdriver was given. ++if test "${with_pngdriver+set}" = set; then : ++ withval=$with_pngdriver; if test "$withval" != no ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ ALT_HOME="$withval" ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++else ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ALT_HOME=/usr ++ ++fi ++ ++ ++ ++# ++# Locate png/gd/zlib, if wanted ++# ++if test -d "${ALT_HOME}" ++then ++ ++# ++# Keep a copy if it fails ++# ++ ALT_LDFLAGS="$LDFLAGS" ++ ALT_CPPFLAGS="$CPPFLAGS" ++ ++# ++# Set ++# ++ LDFLAGS="${LDFLAGS} -L${ALT_HOME}/lib" ++ CPPFLAGS="$CPPFLAGS -I$ALT_HOME/include" ++ ++ ICCHECK=0 ++ if test "`uname`" = "SunOS"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for libiconv_close in -liconv" >&5 ++$as_echo_n "checking for libiconv_close in -liconv... " >&6; } ++if test "${ac_cv_lib_iconv_libiconv_close+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-liconv -L${ALT_HOME}/lib -liconv $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char libiconv_close (); ++int ++main () ++{ ++return libiconv_close (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_iconv_libiconv_close=yes ++else ++ ac_cv_lib_iconv_libiconv_close=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_iconv_libiconv_close" >&5 ++$as_echo "$ac_cv_lib_iconv_libiconv_close" >&6; } ++if test "x$ac_cv_lib_iconv_libiconv_close" = x""yes; then : ++ ICCHECK=1 ++else ++ ICCHECK=0 ++fi ++ ++ if test $ICCHECK = "1" ; then ++ LDFLAGS="${LDFLAGS} -L${ALT_HOME}/lib -liconv" ++ fi ++ LDFLAGS="$LDFLAGS -R$ALT_HOME/lib" ++ fi ++ ++ ++ ++ ++ ++# ++# Check for zlib in ALT_HOME ++# ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for inflateEnd in -lz" >&5 ++$as_echo_n "checking for inflateEnd in -lz... " >&6; } ++if test "${ac_cv_lib_z_inflateEnd+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lz -L${ALT_HOME}/lib -lz $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char inflateEnd (); ++int ++main () ++{ ++return inflateEnd (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_z_inflateEnd=yes ++else ++ ac_cv_lib_z_inflateEnd=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_z_inflateEnd" >&5 ++$as_echo "$ac_cv_lib_z_inflateEnd" >&6; } ++if test "x$ac_cv_lib_z_inflateEnd" = x""yes; then : ++ CHECK=1 ++else ++ CHECK=0 ++fi ++ ++# ++ ++# ++# Check for png ++# ++ if test $CHECK = "1" ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for png_destroy_read_struct in -lpng" >&5 ++$as_echo_n "checking for png_destroy_read_struct in -lpng... " >&6; } ++if test "${ac_cv_lib_png_png_destroy_read_struct+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lpng -L${ALT_HOME}/lib -lz $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char png_destroy_read_struct (); ++int ++main () ++{ ++return png_destroy_read_struct (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_png_png_destroy_read_struct=yes ++else ++ ac_cv_lib_png_png_destroy_read_struct=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_png_png_destroy_read_struct" >&5 ++$as_echo "$ac_cv_lib_png_png_destroy_read_struct" >&6; } ++if test "x$ac_cv_lib_png_png_destroy_read_struct" = x""yes; then : ++ CHECK=1 ++else ++ CHECK=0 ++fi ++ ++ fi ++ ++ ++ ++ ++# ++# Check for gd ++# ++ if test $CHECK = "1"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for gdImageCreateFromPng in -lgd" >&5 ++$as_echo_n "checking for gdImageCreateFromPng in -lgd... " >&6; } ++if test "${ac_cv_lib_gd_gdImageCreateFromPng+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lgd -L${ALT_HOME}/lib -lgd -lpng -lz -lm $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char gdImageCreateFromPng (); ++int ++main () ++{ ++return gdImageCreateFromPng (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_gd_gdImageCreateFromPng=yes ++else ++ ac_cv_lib_gd_gdImageCreateFromPng=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_gd_gdImageCreateFromPng" >&5 ++$as_echo "$ac_cv_lib_gd_gdImageCreateFromPng" >&6; } ++if test "x$ac_cv_lib_gd_gdImageCreateFromPng" = x""yes; then : ++ CHECK=1 ++else ++ CHECK=0 ++fi ++ ++ if test $CHECK = "0"; then ++ echo need to upgrade gd for png driver for plplot ++ fi ++ fi ++# ++# If everything found okay then proceed to include png driver in config. ++# ++ if test $CHECK = "1" ; then ++ LIBS="$LIBS -lgd -lpng -lz -lm" ++ ++ if test $ICCHECK = "1" ; then ++ LIBS="$LIBS -liconv" ++ fi ++ ++ if test "`uname`" = "SunOS"; then ++ LDFLAGS="$LDFLAGS -R$ALT_HOME/lib" ++ fi ++ ++ $as_echo "@%:@define PLD_png 1" >>confdefs.h ++ ++ if true; then ++ AMPNG_TRUE= ++ AMPNG_FALSE='#' ++else ++ AMPNG_TRUE='#' ++ AMPNG_FALSE= ++fi ++ ++ echo PNG libraries found ++ if test $ALT_HOME = "/usr" ; then ++ LDFLAGS="$ALT_LDFLAGS" ++ CPPFLAGS="$ALT_CPPFLAGS" ++ fi ++ else ++# ++# If not okay then reset FLAGS. ++# ++ if false; then ++ AMPNG_TRUE= ++ AMPNG_FALSE='#' ++else ++ AMPNG_TRUE='#' ++ AMPNG_FALSE= ++fi ++ ++ LDFLAGS="$ALT_LDFLAGS" ++ CPPFLAGS="$ALT_CPPFLAGS" ++ echo No png driver will be made due to librarys missing/old. ++ fi ++# echo PNG STUFF FOLLOWS!!! ++# echo CHECK = $CHECK ++# echo LIBS = $LIBS ++# echo LDFLAGS = $LDFLAGS ++# echo CPPFLAGS = $CPPFLAGS ++ ++ ++else ++ if test $withval != "no"; then ++ echo "Directory $ALT_HOME does not exist" ++ exit 0 ++ fi ++fi ++ ++# ++# Handle user authorisation ++# ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if any authorisation type is given" >&5 ++$as_echo_n "checking if any authorisation type is given... " >&6; } ++ ++@%:@ Check whether --with-auth was given. ++if test "${with_auth+set}" = set; then : ++ withval=$with_auth; if test "$withval" != no ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ ++ ALT_AUTHTYPE="-D${withval}" ++ ++ if test "$withval" = "yes" ; then ++ ALT_AUTHTYPE="-DPAM" ++ fi ++ if test "$withval" = "pam" ; then ++ ALT_AUTHTYPE="-DPAM" ++ fi ++ if test "$withval" = "shadow" ; then ++ ALT_AUTHTYPE="-DN_SHADOW" ++ fi ++ if test "$withval" = "rshadow" ; then ++ ALT_AUTHTYPE="-DR_SHADOW" ++ fi ++ if test "$withval" = "noshadow" ; then ++ ALT_AUTHTYPE="-DNO_SHADOW" ++ fi ++ if test "$withval" = "rnoshadow" ; then ++ ALT_AUTHTYPE="-DRNO_SHADOW" ++ fi ++ if test "$withval" = "aixshadow" ; then ++ ALT_AUTHTYPE="-DAIX_SHADOW" ++ fi ++ if test "$withval" = "hpuxshadow" ; then ++ ALT_AUTHTYPE="-DHPUX_SHADOW" ++ fi ++if test "`uname`" != "IRIX64" && test "`uname`" != "IRIX" ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for main in -lcrypt" >&5 ++$as_echo_n "checking for main in -lcrypt... " >&6; } ++if test "${ac_cv_lib_crypt_main+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lcrypt $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++ ++int ++main () ++{ ++return main (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_crypt_main=yes ++else ++ ac_cv_lib_crypt_main=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_crypt_main" >&5 ++$as_echo "$ac_cv_lib_crypt_main" >&6; } ++if test "x$ac_cv_lib_crypt_main" = x""yes; then : ++ LDFLAGS="$LDFLAGS -lcrypt" ++else ++ LDFLAGS="$LDFLAGS" ++fi ++ ++fi ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for main in -lpam" >&5 ++$as_echo_n "checking for main in -lpam... " >&6; } ++if test "${ac_cv_lib_pam_main+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lpam $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++ ++int ++main () ++{ ++return main (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_pam_main=yes ++else ++ ac_cv_lib_pam_main=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_pam_main" >&5 ++$as_echo "$ac_cv_lib_pam_main" >&6; } ++if test "x$ac_cv_lib_pam_main" = x""yes; then : ++ LDFLAGS="$LDFLAGS -lpam" ++else ++ LDFLAGS="$LDFLAGS" ++fi ++ ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++else ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++# if test "$JAVA_OK" = "yes" ; then ++# echo "Error: --with-java=dir unspecified" ++# exit 0 ++# fi ++ ++fi ++ ++ ++if test -n "${ALT_AUTHTYPE}" ++then ++ CFLAGS="$CFLAGS ${ALT_AUTHTYPE}" ++else ++ CFLAGS="$CFLAGS -DNO_AUTH" ++fi ++ ++ ++ ++# ++# ++# ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if Linux x86_64" >&5 ++$as_echo_n "checking if Linux x86_64... " >&6; } ++ ++ ++if test "`uname -a | grep Linux`"; then ++ if test "`uname -a | grep x86_64`"; then ++ CFLAGS="${CFLAGS} -D__amd64__" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ fi ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ ++ ++ ++@%:@ Check whether --with-mysql was given. ++if test "${with_mysql+set}" = set; then : ++ withval=$with_mysql; ++ if test "$withval" = "no"; then ++ want_mysql="no" ++ elif test "$withval" = "yes"; then ++ want_mysql="yes" ++ else ++ want_mysql="yes" ++ MYSQL_CONFIG="$withval" ++ fi ++ ++else ++ want_mysql="yes" ++ ++fi ++ ++ ++ MYSQL_CFLAGS="" ++ MYSQL_LDFLAGS="" ++ MYSQL_VERSION="" ++ ++ ++ if test "$want_mysql" = "yes"; then ++ ++ if test -z "$MYSQL_CONFIG" -o test; then ++ # Extract the first word of "mysql_config", so it can be a program name with args. ++set dummy mysql_config; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_path_MYSQL_CONFIG+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ case $MYSQL_CONFIG in ++ [\\/]* | ?:[\\/]*) ++ ac_cv_path_MYSQL_CONFIG="$MYSQL_CONFIG" # Let the user override the test with a path. ++ ;; ++ *) ++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_path_MYSQL_CONFIG="$as_dir/$ac_word$ac_exec_ext" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++ test -z "$ac_cv_path_MYSQL_CONFIG" && ac_cv_path_MYSQL_CONFIG="no" ++ ;; ++esac ++fi ++MYSQL_CONFIG=$ac_cv_path_MYSQL_CONFIG ++if test -n "$MYSQL_CONFIG"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $MYSQL_CONFIG" >&5 ++$as_echo "$MYSQL_CONFIG" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ fi ++ ++ if test "$MYSQL_CONFIG" != "no"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for MySQL libraries" >&5 ++$as_echo_n "checking for MySQL libraries... " >&6; } ++ ++ MYSQL_CFLAGS="`$MYSQL_CONFIG --include`" ++ MYSQL_LDFLAGS="`$MYSQL_CONFIG --libs`" ++ ++ MYSQL_VERSION=`$MYSQL_CONFIG --version` ++ ++ ++ EMBCFLAGS=$CFLAGS ++ EMBLDFLAGS=$LDFLAGS ++ CFLAGS="$MYSQL_CFLAGS $EMBCFLAGS" ++ LDFLAGS="$MYSQL_LDFLAGS $EMBLDFLAGS" ++ ++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++#include ++ #include "mysql.h" ++int ++main () ++{ ++mysql_info(NULL) ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ havemysql=yes ++else ++ havemysql=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++ ++ CFLAGS=$EMBCFLAGS ++ LDFLAGS=$EMBLDFLAGS ++ ++ if test "$havemysql" = yes; then ++ ++$as_echo "@%:@define HAVE_MYSQL 1" >>confdefs.h ++ ++ found_mysql="yes" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ else ++ MYSQL_CFLAGS="" ++ MYSQL_LDFLAGS="" ++ found_mysql="no" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ fi ++ else ++ found_mysql="no" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ fi ++ fi ++ ++ ++ ++ mysql_version_req= ++ ++ if test "$found_mysql" = "yes" -a -n "$mysql_version_req"; then ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking if MySQL version is >= $mysql_version_req" >&5 ++$as_echo_n "checking if MySQL version is >= $mysql_version_req... " >&6; } ++ ++ mysql_version_req_major=`expr $mysql_version_req : '\([0-9]*\)'` ++ mysql_version_req_minor=`expr $mysql_version_req : '[0-9]*\.\([0-9]*\)'` ++ mysql_version_req_micro=`expr $mysql_version_req : '[0-9]*\.[0-9]*\.\([0-9]*\)'` ++ if test "x$mysql_version_req_micro" = "x"; then ++ mysql_version_req_micro="0" ++ fi ++ ++ mysql_version_req_number=`expr $mysql_version_req_major \* 1000000 \ ++ \+ $mysql_version_req_minor \* 1000 \ ++ \+ $mysql_version_req_micro` ++ ++ mysql_version_major=`expr $MYSQL_VERSION : '\([0-9]*\)'` ++ mysql_version_minor=`expr $MYSQL_VERSION : '[0-9]*\.\([0-9]*\)'` ++ mysql_version_micro=`expr $MYSQL_VERSION : '[0-9]*\.[0-9]*\.\([0-9]*\)'` ++ if test "x$mysql_version_micro" = "x"; then ++ mysql_version_micro="0" ++ fi ++ ++ mysql_version_number=`expr $mysql_version_major \* 1000000 \ ++ \+ $mysql_version_minor \* 1000 \ ++ \+ $mysql_version_micro` ++ ++ mysql_version_check=`expr $mysql_version_number \>\= $mysql_version_req_number` ++ if test "$mysql_version_check" = "1"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ fi ++ fi ++ ++ ++ ++ ++ ++ ++ ++@%:@ Check whether --with-postgresql was given. ++if test "${with_postgresql+set}" = set; then : ++ withval=$with_postgresql; ++ if test "$withval" = "no"; then ++ want_postgresql="no" ++ elif test "$withval" = "yes"; then ++ want_postgresql="yes" ++ else ++ want_postgresql="yes" ++ PG_CONFIG="$withval" ++ fi ++ ++else ++ want_postgresql="yes" ++ ++fi ++ ++ ++ POSTGRESQL_CFLAGS="" ++ POSTGRESQL_LDFLAGS="" ++ POSTGRESQL_POSTGRESQL="" ++ ++ ++ if test "$want_postgresql" = "yes"; then ++ ++ if test -z "$PG_CONFIG" -o test; then ++ # Extract the first word of "pg_config", so it can be a program name with args. ++set dummy pg_config; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_path_PG_CONFIG+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ case $PG_CONFIG in ++ [\\/]* | ?:[\\/]*) ++ ac_cv_path_PG_CONFIG="$PG_CONFIG" # Let the user override the test with a path. ++ ;; ++ *) ++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_path_PG_CONFIG="$as_dir/$ac_word$ac_exec_ext" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++ test -z "$ac_cv_path_PG_CONFIG" && ac_cv_path_PG_CONFIG="no" ++ ;; ++esac ++fi ++PG_CONFIG=$ac_cv_path_PG_CONFIG ++if test -n "$PG_CONFIG"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $PG_CONFIG" >&5 ++$as_echo "$PG_CONFIG" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ fi ++ ++ if test "$PG_CONFIG" != "no"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for PostgreSQL libraries" >&5 ++$as_echo_n "checking for PostgreSQL libraries... " >&6; } ++ ++ POSTGRESQL_CFLAGS="-I`$PG_CONFIG --includedir`" ++ POSTGRESQL_LDFLAGS="-L`$PG_CONFIG --libdir` -lpq" ++ ++ POSTGRESQL_VERSION=`$PG_CONFIG --version | sed -e 's#PostgreSQL ##'` ++ ++ ++$as_echo "@%:@define HAVE_POSTGRESQL 1" >>confdefs.h ++ ++ ++ found_postgresql="yes" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ else ++ found_postgresql="no" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: Not configuring for PostgreSQL" >&5 ++$as_echo "Not configuring for PostgreSQL" >&6; } ++ fi ++ fi ++ ++ ++ ++ postgresql_version_req= ++ ++ if test "$found_postgresql" = "yes" -a -n "$postgresql_version_req"; then ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking if PostgreSQL version is >= $postgresql_version_req" >&5 ++$as_echo_n "checking if PostgreSQL version is >= $postgresql_version_req... " >&6; } ++ ++ postgresql_version_req_major=`expr $postgresql_version_req : '\([0-9]*\)'` ++ postgresql_version_req_minor=`expr $postgresql_version_req : '[0-9]*\.\([0-9]*\)'` ++ postgresql_version_req_micro=`expr $postgresql_version_req : '[0-9]*\.[0-9]*\.\([0-9]*\)'` ++ if test "x$postgresql_version_req_micro" = "x"; then ++ postgresql_version_req_micro="0" ++ fi ++ ++ postgresql_version_req_number=`expr $postgresql_version_req_major \* 1000000 \ ++ \+ $postgresql_version_req_minor \* 1000 \ ++ \+ $postgresql_version_req_micro` ++ ++ postgresql_version_major=`expr $POSTGRESQL_VERSION : '\([0-9]*\)'` ++ postgresql_version_minor=`expr $POSTGRESQL_VERSION : '[0-9]*\.\([0-9]*\)'` ++ postgresql_version_micro=`expr $POSTGRESQL_VERSION : '[0-9]*\.[0-9]*\.\([0-9]*\)'` ++ if test "x$postgresql_version_micro" = "x"; then ++ postgresql_version_micro="0" ++ fi ++ ++ postgresql_version_number=`expr $postgresql_version_major \* 1000000 \ ++ \+ $postgresql_version_minor \* 1000 \ ++ \+ $postgresql_version_micro` ++ ++ postgresql_version_check=`expr $postgresql_version_number \>\= $postgresql_version_req_number` ++ if test "$postgresql_version_check" = "1"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ fi ++ fi ++ ++ ++ ++ ++ ++ ++CFLAGS="$CFLAGS $MYSQL_CFLAGS" ++LDFLAGS="$LDFLAGS $MYSQL_LDFLAGS" ++ ++CFLAGS="$CFLAGS $POSTGRESQL_CFLAGS" ++LDFLAGS="$LDFLAGS $POSTGRESQL_LDFLAGS" ++ ++ ++ ++# Extract the first word of "javac", so it can be a program name with args. ++set dummy javac; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_javac_in_path+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$javac_in_path"; then ++ ac_cv_prog_javac_in_path="$javac_in_path" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_javac_in_path="true" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++ test -z "$ac_cv_prog_javac_in_path" && ac_cv_prog_javac_in_path="false" ++fi ++fi ++javac_in_path=$ac_cv_prog_javac_in_path ++if test -n "$javac_in_path"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $javac_in_path" >&5 ++$as_echo "$javac_in_path" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++# Extract the first word of "ant", so it can be a program name with args. ++set dummy ant; ac_word=$2 ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5 ++$as_echo_n "checking for $ac_word... " >&6; } ++if test "${ac_cv_prog_ant_in_path+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ if test -n "$ant_in_path"; then ++ ac_cv_prog_ant_in_path="$ant_in_path" # Let the user override the test. ++else ++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ for ac_exec_ext in '' $ac_executable_extensions; do ++ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then ++ ac_cv_prog_ant_in_path="true" ++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5 ++ break 2 ++ fi ++done ++ done ++IFS=$as_save_IFS ++ ++ test -z "$ac_cv_prog_ant_in_path" && ac_cv_prog_ant_in_path="false" ++fi ++fi ++ant_in_path=$ac_cv_prog_ant_in_path ++if test -n "$ant_in_path"; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ant_in_path" >&5 ++$as_echo "$ant_in_path" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ if test "$ant_in_path" = "true" && "$javac_in_path" = "true"; then ++ EHAVEANT_TRUE= ++ EHAVEANT_FALSE='#' ++else ++ EHAVEANT_TRUE='#' ++ EHAVEANT_FALSE= ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++ ++#dnl Test if --enable-corba is given ++#AC_ARG_ENABLE(corba, ++# AS_HELP_STRING([--enable-corba], [corba (need glib and orbit)])) ++#if test "${enable_corba}" = "yes" ; then ++#AC_MSG_CHECKING(for ORBit and glib) ++#CPPFLAGS="$CPPFLAGS -I/usr/lib/glib/include -I/usr/local/lib/glib/include" ++# ++#AC_CHECK_HEADERS(glib.h) ++#AC_CHECK_HEADERS(orb/orbit.h) ++#AC_CHECK_LIB(glib, main) ++# ++#AC_CHECK_LIB(ORBitutil, main) ++#AC_CHECK_LIB(IIOP, main) ++#AC_CHECK_LIB(ORBit, main) ++#fi ++ ++@%:@ Check whether --enable-debug was given. ++if test "${enable_debug+set}" = set; then : ++ enableval=$enable_debug; ++fi ++ ++if test "${enable_debug}" = "yes" ; then ++ CFLAGS="$CFLAGS -g" ++fi ++ ++ ++if test "`uname`" = "IRIX" || test "`uname`" = "IRIX64"; then ++CFLAGS="-Wl,-LD_MSG:off=85:off=84:off=16:off=134 $CFLAGS" ++fi ++ ++ ++ ++ ++if test "${enable_large+set}" != set; then ++enable_large=yes ++fi ++ ++ ++@%:@ Check whether --enable-large was given. ++if test "${enable_large+set}" = set; then : ++ enableval=$enable_large; ++fi ++ ++if test "${enable_large}" = "yes" ; then ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for large file support" >&5 ++$as_echo_n "checking for large file support... " >&6; } ++ ++if test "`uname`" = "Linux"; then ++CPPFLAGS="-DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE $CPPFLAGS" ++fi ++ ++if test "`uname`" = "FreeBSD"; then ++CPPFLAGS="-DAJ_FreeBSDLF $CPPFLAGS" ++fi ++ ++if test "`uname`" = "SunOS"; then ++CPPFLAGS="-DAJ_SolarisLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE $CPPFLAGS" ++fi ++ ++if test "`uname`" = "OSF1"; then ++CPPFLAGS="-DAJ_OSF1LF $CPPFLAGS" ++fi ++ ++if test "`uname`" = "IRIX" || test "`uname`" = "IRIX64"; then ++CPPFLAGS="-DAJ_IRIXLF -D_LARGEFILE64_SOURCE $CPPFLAGS" ++fi ++ ++if test "`uname`" = "AIX"; then ++CPPFLAGS="-DAJ_AIXLF -D_LARGE_FILES $CPPFLAGS" ++fi ++ ++if test "`uname`" = "HP-UX"; then ++CPPFLAGS="-DAJ_HPUXLF -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 $CPPFLAGS" ++fi ++ ++if test "`uname`" = "Darwin"; then ++CPPFLAGS="-DAJ_MACOSXLF $CPPFLAGS" ++fi ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: done" >&5 ++$as_echo "done" >&6; } ++fi ++ ++ ++ ++ ++ ++ ++ ++have_systemlibs=no ++@%:@ Check whether --enable-systemlibs was given. ++if test "${enable_systemlibs+set}" = set; then : ++ enableval=$enable_systemlibs; ++fi ++ ++if test "${enable_systemlibs}" = "yes" ; then ++ have_systemlibs=yes ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for pcre_compile in -lpcre" >&5 ++$as_echo_n "checking for pcre_compile in -lpcre... " >&6; } ++if test "${ac_cv_lib_pcre_pcre_compile+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lpcre $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char pcre_compile (); ++int ++main () ++{ ++return pcre_compile (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_pcre_pcre_compile=yes ++else ++ ac_cv_lib_pcre_pcre_compile=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_pcre_pcre_compile" >&5 ++$as_echo "$ac_cv_lib_pcre_pcre_compile" >&6; } ++if test "x$ac_cv_lib_pcre_pcre_compile" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define HAVE_LIBPCRE 1 ++_ACEOF ++ ++ LIBS="-lpcre $LIBS" ++ ++fi ++ ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for XML_ParserCreate in -lexpat" >&5 ++$as_echo_n "checking for XML_ParserCreate in -lexpat... " >&6; } ++if test "${ac_cv_lib_expat_XML_ParserCreate+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lexpat $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char XML_ParserCreate (); ++int ++main () ++{ ++return XML_ParserCreate (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_expat_XML_ParserCreate=yes ++else ++ ac_cv_lib_expat_XML_ParserCreate=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_expat_XML_ParserCreate" >&5 ++$as_echo "$ac_cv_lib_expat_XML_ParserCreate" >&6; } ++if test "x$ac_cv_lib_expat_XML_ParserCreate" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++@%:@define HAVE_LIBEXPAT 1 ++_ACEOF ++ ++ LIBS="-lexpat $LIBS" ++ ++fi ++ ++fi ++ if test "$have_systemlibs" = "yes"; then ++ ESYSTEMLIBS_TRUE= ++ ESYSTEMLIBS_FALSE='#' ++else ++ ESYSTEMLIBS_TRUE='#' ++ ESYSTEMLIBS_FALSE= ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for purify" >&5 ++$as_echo_n "checking for purify... " >&6; } ++ @%:@ Check whether --enable-purify was given. ++if test "${enable_purify+set}" = set; then : ++ enableval=$enable_purify; ++fi ++ ++if test "${enable_purify}" = "yes" ; then ++ CC="purify --chain-length="20" -best-effort -windows=yes gcc -g" ++ LIBTOOL="$LIBTOOL --tag=CC" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++ ++if test "${with_gccprofile}" = "yes" ; then ++ CFLAGS="$CFLAGS -pg" ++ LDFLAGS="$LDFLAGS -pg" ++fi ++ ++ ++ ++have_warnings=no ++ ++@%:@ Check whether --enable-warnings was given. ++if test "${enable_warnings+set}" = set; then : ++ enableval=$enable_warnings; ++fi ++ ++if test "${enable_warnings}" = "yes" ; then ++ if test "$CC" = "gcc"; then ++ have_warnings=yes ++ WARN_CFLAGS="-Wall -fno-strict-aliasing" ++ fi ++fi ++ if test "$have_warnings" = "yes"; then ++ WARNINGS_TRUE= ++ WARNINGS_FALSE='#' ++else ++ WARNINGS_TRUE='#' ++ WARNINGS_FALSE= ++fi ++ ++ ++ ++ ++if test "$CC" = "cc"; then ++ case "$host" in ++ alpha*-dec-osf*) CFLAGS="$CFLAGS -ieee";; ++ esac ++fi ++ if test "${enable_purify}" = "yes"; then ++ PURIFY_TRUE= ++ PURIFY_FALSE='#' ++else ++ PURIFY_TRUE='#' ++ PURIFY_FALSE= ++fi ++ ++ ++ ++ if test "$CC" = "gcc"; then ++ ISGCC_TRUE= ++ ISGCC_FALSE='#' ++else ++ ISGCC_TRUE='#' ++ ISGCC_FALSE= ++fi ++ ++ ++ ++ ++ ++ ++ ++ ++have_devwarnings=no ++ ++@%:@ Check whether --enable-devwarnings was given. ++if test "${enable_devwarnings+set}" = set; then : ++ enableval=$enable_devwarnings; ++fi ++ ++if test "${enable_devwarnings}" = "yes" ; then ++ if test "$CC" = "gcc"; then ++ have_devwarnings=yes ++ DEVWARN_CFLAGS="-Wextra" ++ ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wstrict-prototypes -Wmissing-prototypes" ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wold-style-definition -Wmissing-declarations" ++ ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wwrite-strings" ++ ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wshadow" ++ ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wdeclaration-after-statement -Wundef" ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wpointer-arith" ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wcast-qual -Wcast-align" ++ ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wbad-function-cast" ++ ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wsign-compare" ++ ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wmissing-field-initializers" ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wmissing-noreturn -Wnested-externs" ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wredundant-decls" ++ ++ ++ ++ ++ ++ fi ++fi ++ ++ ++@%:@ Check whether --enable-devextrawarnings was given. ++if test "${enable_devextrawarnings+set}" = set; then : ++ enableval=$enable_devextrawarnings; ++fi ++ ++if test "${enable_devextrawarnings}" = "yes" ; then ++ if test "$have_devwarnings" = "yes"; then ++ ++ DEVWARN_CFLAGS="$DEVWARN_CFLAGS -Wpadded" ++ ++ fi ++fi ++ ++ ++ if test "$have_devwarnings" = "yes"; then ++ DEVWARNINGS_TRUE= ++ DEVWARNINGS_FALSE='#' ++else ++ DEVWARNINGS_TRUE='#' ++ DEVWARNINGS_FALSE= ++fi ++ ++ ++ ++platform_cygwin='no' ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for cygwin" >&5 ++$as_echo_n "checking for cygwin... " >&6; } ++case "$host" in ++ *-*-mingw*|*-*-cygwin*) ++ platform_cygwin='yes' ++ ;; ++ *) ++ platform_cygwin='no' ++ ;; ++esac ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $platform_cygwin" >&5 ++$as_echo "$platform_cygwin" >&6; } ++ if test "$platform_cygwin" = "yes"; then ++ ISCYGWIN_TRUE= ++ ISCYGWIN_FALSE='#' ++else ++ ISCYGWIN_TRUE='#' ++ ISCYGWIN_FALSE= ++fi ++ ++ ++ ++needajax=no ++ if test "`uname`" = "AIX"; then ++ ISAIXIA64_TRUE= ++ ISAIXIA64_FALSE='#' ++else ++ ISAIXIA64_TRUE='#' ++ ISAIXIA64_FALSE= ++fi ++ ++ if test "${enable_shared}" = "yes"; then ++ ISSHARED_TRUE= ++ ISSHARED_FALSE='#' ++else ++ ISSHARED_TRUE='#' ++ ISSHARED_FALSE= ++fi ++ ++ ++ ++if test "`uname`" = "AIX"; then ++if test -d ajax/.libs ; then ++ echo AIX ajax/.libs exists ++else ++ mkdir ajax/.libs ++fi ++ ++#if test "$host_os" = "aix5.1.0.0"; then ++# echo $host_os ++# exit 0 ++#fi ++case $host_os in ++ aix5*) needajax=no ;; ++ aix4.3.3*) needajax=yes ;; ++ *) needajax=no ;; ++esac ++fi ++ if test "$needajax" = "yes"; then ++ NEEDAJAX_TRUE= ++ NEEDAJAX_FALSE='#' ++else ++ NEEDAJAX_TRUE='#' ++ NEEDAJAX_FALSE= ++fi ++ ++ ++ ++ ++ ++if test "`uname`" = "HP-UX"; then ++LDFLAGS="$LDFLAGS -lsec" ++fi ++ ++ ++ ++if test "${enable_mprobe+set}" != set; then ++enable_mprobe=no ++fi ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for mprobe" >&5 ++$as_echo_n "checking for mprobe... " >&6; } ++@%:@ Check whether --enable-mprobe was given. ++if test "${enable_mprobe+set}" = set; then : ++ enableval=$enable_mprobe; ++fi ++ ++if test "${enable_mprobe}" = "yes" ; then ++ CPPFLAGS="-DAJ_MPROBE $CPPFLAGS" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++ ++if test "${enable_savestats+set}" != set; then ++enable_savestats=no ++fi ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for savestats" >&5 ++$as_echo_n "checking for savestats... " >&6; } ++@%:@ Check whether --enable-savestats was given. ++if test "${enable_savestats+set}" = set; then : ++ enableval=$enable_savestats; ++fi ++ ++if test "${enable_savestats}" = "yes" ; then ++ CPPFLAGS="-DAJ_SAVESTATS $CPPFLAGS" ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++ ++# ++# Handle jemboss threading options ++# ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking if any threading type is given" >&5 ++$as_echo_n "checking if any threading type is given... " >&6; } ++ ++@%:@ Check whether --with-thread was given. ++if test "${with_thread+set}" = set; then : ++ withval=$with_thread; if test "$withval" != no ; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ ++ ALT_THREADTYPE="-D${withval}" ++ ++ if test "$withval" = "yes" ; then ++ CFLAGS="$CFLAGS -D_REENTRANT" ++ LDFLAGS="$LDFLAGS -lpthread" ++ LIBS="$LIBS -lpthread" ++ fi ++ ++ if test "$withval" = "freebsd" ; then ++ CFLAGS="$CFLAGS -D_THREAD_SAFE -pthread" ++ LDFLAGS="$LDFLAGS" ++ LIBS="$LIBS -lc_r" ++ fi ++ ++ if test "$withval" = "linux" ; then ++ CFLAGS="$CFLAGS -D_REENTRANT" ++ LDFLAGS="$LDFLAGS -lpthread" ++ LIBS="$LIBS -lpthread" ++ fi ++ ++ if test "$withval" = "solaris" ; then ++ CFLAGS="$CFLAGS -D_POSIX_C_SOURCE=199506L" ++ LDFLAGS="$LDFLAGS -lpthread" ++ LIBS="$LIBS -lpthread" ++ fi ++ if test "$withval" = "macos" ; then ++ CFLAGS="$CFLAGS" ++ LDFLAGS="$LDFLAGS -lpthread" ++ LIBS="$LIBS -lpthread" ++ fi ++ if test "$withval" = "hpux" ; then ++ CFLAGS="$CFLAGS -Ae +z -DNATIVE -D_POSIX_C_SOURCE=199506L" ++ LDFLAGS="$LDFLAGS -lpthread" ++ LIBS="$LIBS -lpthread" ++ fi ++ if test "$withval" = "irix" ; then ++ CFLAGS="$CFLAGS" ++ LDFLAGS="$LDFLAGS -lpthread" ++ LIBS="$LIBS -lpthread" ++ fi ++ if test "$withval" = "aix" ; then ++ CFLAGS="$CFLAGS -D_REENTRANT" ++ LDFLAGS="$LDFLAGS -lpthread" ++ LIBS="$LIBS -lpthread" ++ fi ++ if test "$withval" = "osf" ; then ++ CFLAGS="$CFLAGS -D_REENTRANT -D_OSF_SOURCE" ++ LDFLAGS="$LDFLAGS -lpthread" ++ LIBS="$LIBS -lpthread" ++ fi ++else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++fi ++else ++ ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ ++fi ++ ++ ++ ++ ++ac_config_files="$ac_config_files nucleus/Makefile ajax/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/JASPAR_PBM/Makefile emboss/data/JASPAR_PBM_HLH/Makefile emboss/data/JASPAR_PBM_HOMEO/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile" ++ ++cat >confcache <<\_ACEOF ++# This file is a shell script that caches the results of configure ++# tests run on this system so they can be shared between configure ++# scripts and configure runs, see configure's option --config-cache. ++# It is not useful on other systems. If it contains results you don't ++# want to keep, you may remove or edit it. ++# ++# config.status only pays attention to the cache file if you give it ++# the --recheck option to rerun configure. ++# ++# `ac_cv_env_foo' variables (set or unset) will be overridden when ++# loading this file, other *unset* `ac_cv_foo' will be assigned the ++# following values. ++ ++_ACEOF ++ ++# The following way of writing the cache mishandles newlines in values, ++# but we know of no workaround that is simple, portable, and efficient. ++# So, we kill variables containing newlines. ++# Ultrix sh set writes to stderr and can't be redirected directly, ++# and sets the high bit in the cache file unless we assign to the vars. ++( ++ for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do ++ eval ac_val=\$$ac_var ++ case $ac_val in #( ++ *${as_nl}*) ++ case $ac_var in #( ++ *_cv_*) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5 ++$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;; ++ esac ++ case $ac_var in #( ++ _ | IFS | as_nl) ;; #( ++ BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #( ++ *) { eval $ac_var=; unset $ac_var;} ;; ++ esac ;; ++ esac ++ done ++ ++ (set) 2>&1 | ++ case $as_nl`(ac_space=' '; set) 2>&1` in #( ++ *${as_nl}ac_space=\ *) ++ # `set' does not quote correctly, so add quotes: double-quote ++ # substitution turns \\\\ into \\, and sed turns \\ into \. ++ sed -n \ ++ "s/'/'\\\\''/g; ++ s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p" ++ ;; #( ++ *) ++ # `set' quotes correctly as required by POSIX, so do not add quotes. ++ sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p" ++ ;; ++ esac | ++ sort ++) | ++ sed ' ++ /^ac_cv_env_/b end ++ t clear ++ :clear ++ s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/ ++ t end ++ s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/ ++ :end' >>confcache ++if diff "$cache_file" confcache >/dev/null 2>&1; then :; else ++ if test -w "$cache_file"; then ++ test "x$cache_file" != "x/dev/null" && ++ { $as_echo "$as_me:${as_lineno-$LINENO}: updating cache $cache_file" >&5 ++$as_echo "$as_me: updating cache $cache_file" >&6;} ++ cat confcache >$cache_file ++ else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: not updating unwritable cache $cache_file" >&5 ++$as_echo "$as_me: not updating unwritable cache $cache_file" >&6;} ++ fi ++fi ++rm -f confcache ++ ++test "x$prefix" = xNONE && prefix=$ac_default_prefix ++# Let make expand exec_prefix. ++test "x$exec_prefix" = xNONE && exec_prefix='${prefix}' ++ ++# Transform confdefs.h into DEFS. ++# Protect against shell expansion while executing Makefile rules. ++# Protect against Makefile macro expansion. ++# ++# If the first sed substitution is executed (which looks for macros that ++# take arguments), then branch to the quote section. Otherwise, ++# look for a macro that doesn't take arguments. ++ac_script=' ++:mline ++/\\$/{ ++ N ++ s,\\\n,, ++ b mline ++} ++t clear ++:clear ++s/^[ ]*#[ ]*define[ ][ ]*\([^ (][^ (]*([^)]*)\)[ ]*\(.*\)/-D\1=\2/g ++t quote ++s/^[ ]*#[ ]*define[ ][ ]*\([^ ][^ ]*\)[ ]*\(.*\)/-D\1=\2/g ++t quote ++b any ++:quote ++s/[ `~#$^&*(){}\\|;'\''"<>?]/\\&/g ++s/\[/\\&/g ++s/\]/\\&/g ++s/\$/$$/g ++H ++:any ++${ ++ g ++ s/^\n// ++ s/\n/ /g ++ p ++} ++' ++DEFS=`sed -n "$ac_script" confdefs.h` ++ ++ ++ac_libobjs= ++ac_ltlibobjs= ++for ac_i in : $LIB@&t@OBJS; do test "x$ac_i" = x: && continue ++ # 1. Remove the extension, and $U if already installed. ++ ac_script='s/\$U\././;s/\.o$//;s/\.obj$//' ++ ac_i=`$as_echo "$ac_i" | sed "$ac_script"` ++ # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR ++ # will be set to the directory where LIBOBJS objects are built. ++ as_fn_append ac_libobjs " \${LIBOBJDIR}$ac_i\$U.$ac_objext" ++ as_fn_append ac_ltlibobjs " \${LIBOBJDIR}$ac_i"'$U.lo' ++done ++LIB@&t@OBJS=$ac_libobjs ++ ++LTLIBOBJS=$ac_ltlibobjs ++ ++ ++ if test -n "$EXEEXT"; then ++ am__EXEEXT_TRUE= ++ am__EXEEXT_FALSE='#' ++else ++ am__EXEEXT_TRUE='#' ++ am__EXEEXT_FALSE= ++fi ++ ++if test -z "${AMDEP_TRUE}" && test -z "${AMDEP_FALSE}"; then ++ as_fn_error "conditional \"AMDEP\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${am__fastdepCC_TRUE}" && test -z "${am__fastdepCC_FALSE}"; then ++ as_fn_error "conditional \"am__fastdepCC\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${am__fastdepCC_TRUE}" && test -z "${am__fastdepCC_FALSE}"; then ++ as_fn_error "conditional \"am__fastdepCC\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++ ++if test -z "${AMPNG_TRUE}" && test -z "${AMPNG_FALSE}"; then ++ as_fn_error "conditional \"AMPNG\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${AMPDF_TRUE}" && test -z "${AMPDF_FALSE}"; then ++ as_fn_error "conditional \"AMPDF\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${AMPDF_TRUE}" && test -z "${AMPDF_FALSE}"; then ++ as_fn_error "conditional \"AMPDF\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${AMPDF_TRUE}" && test -z "${AMPDF_FALSE}"; then ++ as_fn_error "conditional \"AMPDF\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${AMPNG_TRUE}" && test -z "${AMPNG_FALSE}"; then ++ as_fn_error "conditional \"AMPNG\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${AMPNG_TRUE}" && test -z "${AMPNG_FALSE}"; then ++ as_fn_error "conditional \"AMPNG\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${EHAVEANT_TRUE}" && test -z "${EHAVEANT_FALSE}"; then ++ as_fn_error "conditional \"EHAVEANT\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${ESYSTEMLIBS_TRUE}" && test -z "${ESYSTEMLIBS_FALSE}"; then ++ as_fn_error "conditional \"ESYSTEMLIBS\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${WARNINGS_TRUE}" && test -z "${WARNINGS_FALSE}"; then ++ as_fn_error "conditional \"WARNINGS\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${PURIFY_TRUE}" && test -z "${PURIFY_FALSE}"; then ++ as_fn_error "conditional \"PURIFY\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${ISGCC_TRUE}" && test -z "${ISGCC_FALSE}"; then ++ as_fn_error "conditional \"ISGCC\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${DEVWARNINGS_TRUE}" && test -z "${DEVWARNINGS_FALSE}"; then ++ as_fn_error "conditional \"DEVWARNINGS\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${ISCYGWIN_TRUE}" && test -z "${ISCYGWIN_FALSE}"; then ++ as_fn_error "conditional \"ISCYGWIN\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${ISAIXIA64_TRUE}" && test -z "${ISAIXIA64_FALSE}"; then ++ as_fn_error "conditional \"ISAIXIA64\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${ISSHARED_TRUE}" && test -z "${ISSHARED_FALSE}"; then ++ as_fn_error "conditional \"ISSHARED\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++if test -z "${NEEDAJAX_TRUE}" && test -z "${NEEDAJAX_FALSE}"; then ++ as_fn_error "conditional \"NEEDAJAX\" was never defined. ++Usually this means the macro was only invoked conditionally." "$LINENO" 5 ++fi ++ ++: ${CONFIG_STATUS=./config.status} ++ac_write_fail=0 ++ac_clean_files_save=$ac_clean_files ++ac_clean_files="$ac_clean_files $CONFIG_STATUS" ++{ $as_echo "$as_me:${as_lineno-$LINENO}: creating $CONFIG_STATUS" >&5 ++$as_echo "$as_me: creating $CONFIG_STATUS" >&6;} ++as_write_fail=0 ++cat >$CONFIG_STATUS <<_ASEOF || as_write_fail=1 ++#! $SHELL ++# Generated by $as_me. ++# Run this file to recreate the current configuration. ++# Compiler output produced by configure, useful for debugging ++# configure, is in config.log if it exists. ++ ++debug=false ++ac_cs_recheck=false ++ac_cs_silent=false ++ ++SHELL=\${CONFIG_SHELL-$SHELL} ++export SHELL ++_ASEOF ++cat >>$CONFIG_STATUS <<\_ASEOF || as_write_fail=1 ++## -------------------- ## ++## M4sh Initialization. ## ++## -------------------- ## ++ ++# Be more Bourne compatible ++DUALCASE=1; export DUALCASE # for MKS sh ++if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then : ++ emulate sh ++ NULLCMD=: ++ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which ++ # is contrary to our usage. Disable this feature. ++ alias -g '${1+"$@"}'='"$@"' ++ setopt NO_GLOB_SUBST ++else ++ case `(set -o) 2>/dev/null` in @%:@( ++ *posix*) : ++ set -o posix ;; @%:@( ++ *) : ++ ;; ++esac ++fi ++ ++ ++as_nl=' ++' ++export as_nl ++# Printing a long string crashes Solaris 7 /usr/bin/printf. ++as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\' ++as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo ++as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo ++# Prefer a ksh shell builtin over an external printf program on Solaris, ++# but without wasting forks for bash or zsh. ++if test -z "$BASH_VERSION$ZSH_VERSION" \ ++ && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then ++ as_echo='print -r --' ++ as_echo_n='print -rn --' ++elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then ++ as_echo='printf %s\n' ++ as_echo_n='printf %s' ++else ++ if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then ++ as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"' ++ as_echo_n='/usr/ucb/echo -n' ++ else ++ as_echo_body='eval expr "X$1" : "X\\(.*\\)"' ++ as_echo_n_body='eval ++ arg=$1; ++ case $arg in @%:@( ++ *"$as_nl"*) ++ expr "X$arg" : "X\\(.*\\)$as_nl"; ++ arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;; ++ esac; ++ expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl" ++ ' ++ export as_echo_n_body ++ as_echo_n='sh -c $as_echo_n_body as_echo' ++ fi ++ export as_echo_body ++ as_echo='sh -c $as_echo_body as_echo' ++fi ++ ++# The user is always right. ++if test "${PATH_SEPARATOR+set}" != set; then ++ PATH_SEPARATOR=: ++ (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && { ++ (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 || ++ PATH_SEPARATOR=';' ++ } ++fi ++ ++ ++# IFS ++# We need space, tab and new line, in precisely that order. Quoting is ++# there to prevent editors from complaining about space-tab. ++# (If _AS_PATH_WALK were called with IFS unset, it would disable word ++# splitting by setting IFS to empty value.) ++IFS=" "" $as_nl" ++ ++# Find who we are. Look in the path if we contain no directory separator. ++case $0 in @%:@(( ++ *[\\/]* ) as_myself=$0 ;; ++ *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR ++for as_dir in $PATH ++do ++ IFS=$as_save_IFS ++ test -z "$as_dir" && as_dir=. ++ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break ++ done ++IFS=$as_save_IFS ++ ++ ;; ++esac ++# We did not find ourselves, most probably we were run as `sh COMMAND' ++# in which case we are not to be found in the path. ++if test "x$as_myself" = x; then ++ as_myself=$0 ++fi ++if test ! -f "$as_myself"; then ++ $as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2 ++ exit 1 ++fi ++ ++# Unset variables that we do not need and which cause bugs (e.g. in ++# pre-3.0 UWIN ksh). But do not cause bugs in bash 2.01; the "|| exit 1" ++# suppresses any "Segmentation fault" message there. '((' could ++# trigger a bug in pdksh 5.2.14. ++for as_var in BASH_ENV ENV MAIL MAILPATH ++do eval test x\${$as_var+set} = xset \ ++ && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || : ++done ++PS1='$ ' ++PS2='> ' ++PS4='+ ' ++ ++# NLS nuisances. ++LC_ALL=C ++export LC_ALL ++LANGUAGE=C ++export LANGUAGE ++ ++# CDPATH. ++(unset CDPATH) >/dev/null 2>&1 && unset CDPATH ++ ++ ++@%:@ as_fn_error ERROR [LINENO LOG_FD] ++@%:@ --------------------------------- ++@%:@ Output "`basename @S|@0`: error: ERROR" to stderr. If LINENO and LOG_FD are ++@%:@ provided, also output the error to LOG_FD, referencing LINENO. Then exit the ++@%:@ script with status @S|@?, using 1 if that was 0. ++as_fn_error () ++{ ++ as_status=$?; test $as_status -eq 0 && as_status=1 ++ if test "$3"; then ++ as_lineno=${as_lineno-"$2"} as_lineno_stack=as_lineno_stack=$as_lineno_stack ++ $as_echo "$as_me:${as_lineno-$LINENO}: error: $1" >&$3 ++ fi ++ $as_echo "$as_me: error: $1" >&2 ++ as_fn_exit $as_status ++} @%:@ as_fn_error ++ ++ ++@%:@ as_fn_set_status STATUS ++@%:@ ----------------------- ++@%:@ Set @S|@? to STATUS, without forking. ++as_fn_set_status () ++{ ++ return $1 ++} @%:@ as_fn_set_status ++ ++@%:@ as_fn_exit STATUS ++@%:@ ----------------- ++@%:@ Exit the shell with STATUS, even in a "trap 0" or "set -e" context. ++as_fn_exit () ++{ ++ set +e ++ as_fn_set_status $1 ++ exit $1 ++} @%:@ as_fn_exit ++ ++@%:@ as_fn_unset VAR ++@%:@ --------------- ++@%:@ Portably unset VAR. ++as_fn_unset () ++{ ++ { eval $1=; unset $1;} ++} ++as_unset=as_fn_unset ++@%:@ as_fn_append VAR VALUE ++@%:@ ---------------------- ++@%:@ Append the text in VALUE to the end of the definition contained in VAR. Take ++@%:@ advantage of any shell optimizations that allow amortized linear growth over ++@%:@ repeated appends, instead of the typical quadratic growth present in naive ++@%:@ implementations. ++if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then : ++ eval 'as_fn_append () ++ { ++ eval $1+=\$2 ++ }' ++else ++ as_fn_append () ++ { ++ eval $1=\$$1\$2 ++ } ++fi # as_fn_append ++ ++@%:@ as_fn_arith ARG... ++@%:@ ------------------ ++@%:@ Perform arithmetic evaluation on the ARGs, and store the result in the ++@%:@ global @S|@as_val. Take advantage of shells that can avoid forks. The arguments ++@%:@ must be portable across @S|@(()) and expr. ++if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then : ++ eval 'as_fn_arith () ++ { ++ as_val=$(( $* )) ++ }' ++else ++ as_fn_arith () ++ { ++ as_val=`expr "$@" || test $? -eq 1` ++ } ++fi # as_fn_arith ++ ++ ++if expr a : '\(a\)' >/dev/null 2>&1 && ++ test "X`expr 00001 : '.*\(...\)'`" = X001; then ++ as_expr=expr ++else ++ as_expr=false ++fi ++ ++if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then ++ as_basename=basename ++else ++ as_basename=false ++fi ++ ++if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then ++ as_dirname=dirname ++else ++ as_dirname=false ++fi ++ ++as_me=`$as_basename -- "$0" || ++$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \ ++ X"$0" : 'X\(//\)$' \| \ ++ X"$0" : 'X\(/\)' \| . 2>/dev/null || ++$as_echo X/"$0" | ++ sed '/^.*\/\([^/][^/]*\)\/*$/{ ++ s//\1/ ++ q ++ } ++ /^X\/\(\/\/\)$/{ ++ s//\1/ ++ q ++ } ++ /^X\/\(\/\).*/{ ++ s//\1/ ++ q ++ } ++ s/.*/./; q'` ++ ++# Avoid depending upon Character Ranges. ++as_cr_letters='abcdefghijklmnopqrstuvwxyz' ++as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ' ++as_cr_Letters=$as_cr_letters$as_cr_LETTERS ++as_cr_digits='0123456789' ++as_cr_alnum=$as_cr_Letters$as_cr_digits ++ ++ECHO_C= ECHO_N= ECHO_T= ++case `echo -n x` in @%:@((((( ++-n*) ++ case `echo 'xy\c'` in ++ *c*) ECHO_T=' ';; # ECHO_T is single tab character. ++ xy) ECHO_C='\c';; ++ *) echo `echo ksh88 bug on AIX 6.1` > /dev/null ++ ECHO_T=' ';; ++ esac;; ++*) ++ ECHO_N='-n';; ++esac ++ ++rm -f conf$$ conf$$.exe conf$$.file ++if test -d conf$$.dir; then ++ rm -f conf$$.dir/conf$$.file ++else ++ rm -f conf$$.dir ++ mkdir conf$$.dir 2>/dev/null ++fi ++if (echo >conf$$.file) 2>/dev/null; then ++ if ln -s conf$$.file conf$$ 2>/dev/null; then ++ as_ln_s='ln -s' ++ # ... but there are two gotchas: ++ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail. ++ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable. ++ # In both cases, we have to default to `cp -p'. ++ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe || ++ as_ln_s='cp -p' ++ elif ln conf$$.file conf$$ 2>/dev/null; then ++ as_ln_s=ln ++ else ++ as_ln_s='cp -p' ++ fi ++else ++ as_ln_s='cp -p' ++fi ++rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file ++rmdir conf$$.dir 2>/dev/null ++ ++ ++@%:@ as_fn_mkdir_p ++@%:@ ------------- ++@%:@ Create "@S|@as_dir" as a directory, including parents if necessary. ++as_fn_mkdir_p () ++{ ++ ++ case $as_dir in #( ++ -*) as_dir=./$as_dir;; ++ esac ++ test -d "$as_dir" || eval $as_mkdir_p || { ++ as_dirs= ++ while :; do ++ case $as_dir in #( ++ *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'( ++ *) as_qdir=$as_dir;; ++ esac ++ as_dirs="'$as_qdir' $as_dirs" ++ as_dir=`$as_dirname -- "$as_dir" || ++$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \ ++ X"$as_dir" : 'X\(//\)[^/]' \| \ ++ X"$as_dir" : 'X\(//\)$' \| \ ++ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null || ++$as_echo X"$as_dir" | ++ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{ ++ s//\1/ ++ q ++ } ++ /^X\(\/\/\)[^/].*/{ ++ s//\1/ ++ q ++ } ++ /^X\(\/\/\)$/{ ++ s//\1/ ++ q ++ } ++ /^X\(\/\).*/{ ++ s//\1/ ++ q ++ } ++ s/.*/./; q'` ++ test -d "$as_dir" && break ++ done ++ test -z "$as_dirs" || eval "mkdir $as_dirs" ++ } || test -d "$as_dir" || as_fn_error "cannot create directory $as_dir" ++ ++ ++} @%:@ as_fn_mkdir_p ++if mkdir -p . 2>/dev/null; then ++ as_mkdir_p='mkdir -p "$as_dir"' ++else ++ test -d ./-p && rmdir ./-p ++ as_mkdir_p=false ++fi ++ ++if test -x / >/dev/null 2>&1; then ++ as_test_x='test -x' ++else ++ if ls -dL / >/dev/null 2>&1; then ++ as_ls_L_option=L ++ else ++ as_ls_L_option= ++ fi ++ as_test_x=' ++ eval sh -c '\'' ++ if test -d "$1"; then ++ test -d "$1/."; ++ else ++ case $1 in @%:@( ++ -*)set "./$1";; ++ esac; ++ case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in @%:@(( ++ ???[sx]*):;;*)false;;esac;fi ++ '\'' sh ++ ' ++fi ++as_executable_p=$as_test_x ++ ++# Sed expression to map a string onto a valid CPP name. ++as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'" ++ ++# Sed expression to map a string onto a valid variable name. ++as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'" ++ ++ ++exec 6>&1 ++## ----------------------------------- ## ++## Main body of $CONFIG_STATUS script. ## ++## ----------------------------------- ## ++_ASEOF ++test $as_write_fail = 0 && chmod +x $CONFIG_STATUS || ac_write_fail=1 ++ ++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 ++# Save the log message, to keep $0 and so on meaningful, and to ++# report actual input values of CONFIG_FILES etc. instead of their ++# values after options handling. ++ac_log=" ++This file was extended by $as_me, which was ++generated by GNU Autoconf 2.65. Invocation command line was ++ ++ CONFIG_FILES = $CONFIG_FILES ++ CONFIG_HEADERS = $CONFIG_HEADERS ++ CONFIG_LINKS = $CONFIG_LINKS ++ CONFIG_COMMANDS = $CONFIG_COMMANDS ++ $ $0 $@ ++ ++on `(hostname || uname -n) 2>/dev/null | sed 1q` ++" ++ ++_ACEOF ++ ++case $ac_config_files in *" ++"*) set x $ac_config_files; shift; ac_config_files=$*;; ++esac ++ ++ ++ ++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ++# Files that config.status was made for. ++config_files="$ac_config_files" ++config_commands="$ac_config_commands" ++ ++_ACEOF ++ ++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 ++ac_cs_usage="\ ++\`$as_me' instantiates files and other configuration actions ++from templates according to the current configuration. Unless the files ++and actions are specified as TAGs, all are instantiated by default. ++ ++Usage: $0 [OPTION]... [TAG]... ++ ++ -h, --help print this help, then exit ++ -V, --version print version number and configuration settings, then exit ++ --config print configuration, then exit ++ -q, --quiet, --silent ++ do not print progress messages ++ -d, --debug don't remove temporary files ++ --recheck update $as_me by reconfiguring in the same conditions ++ --file=FILE[:TEMPLATE] ++ instantiate the configuration file FILE ++ ++Configuration files: ++$config_files ++ ++Configuration commands: ++$config_commands ++ ++Report bugs to the package provider." ++ ++_ACEOF ++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ++ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`" ++ac_cs_version="\\ ++config.status ++configured by $0, generated by GNU Autoconf 2.65, ++ with options \\"\$ac_cs_config\\" ++ ++Copyright (C) 2009 Free Software Foundation, Inc. ++This config.status script is free software; the Free Software Foundation ++gives unlimited permission to copy, distribute and modify it." ++ ++ac_pwd='$ac_pwd' ++srcdir='$srcdir' ++INSTALL='$INSTALL' ++MKDIR_P='$MKDIR_P' ++AWK='$AWK' ++test -n "\$AWK" || AWK=awk ++_ACEOF ++ ++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 ++# The default lists apply if the user does not specify any file. ++ac_need_defaults=: ++while test $# != 0 ++do ++ case $1 in ++ --*=*) ++ ac_option=`expr "X$1" : 'X\([^=]*\)='` ++ ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'` ++ ac_shift=: ++ ;; ++ *) ++ ac_option=$1 ++ ac_optarg=$2 ++ ac_shift=shift ++ ;; ++ esac ++ ++ case $ac_option in ++ # Handling of the options. ++ -recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r) ++ ac_cs_recheck=: ;; ++ --version | --versio | --versi | --vers | --ver | --ve | --v | -V ) ++ $as_echo "$ac_cs_version"; exit ;; ++ --config | --confi | --conf | --con | --co | --c ) ++ $as_echo "$ac_cs_config"; exit ;; ++ --debug | --debu | --deb | --de | --d | -d ) ++ debug=: ;; ++ --file | --fil | --fi | --f ) ++ $ac_shift ++ case $ac_optarg in ++ *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;; ++ esac ++ as_fn_append CONFIG_FILES " '$ac_optarg'" ++ ac_need_defaults=false;; ++ --he | --h | --help | --hel | -h ) ++ $as_echo "$ac_cs_usage"; exit ;; ++ -q | -quiet | --quiet | --quie | --qui | --qu | --q \ ++ | -silent | --silent | --silen | --sile | --sil | --si | --s) ++ ac_cs_silent=: ;; ++ ++ # This is an error. ++ -*) as_fn_error "unrecognized option: \`$1' ++Try \`$0 --help' for more information." ;; ++ ++ *) as_fn_append ac_config_targets " $1" ++ ac_need_defaults=false ;; ++ ++ esac ++ shift ++done ++ ++ac_configure_extra_args= ++ ++if $ac_cs_silent; then ++ exec 6>/dev/null ++ ac_configure_extra_args="$ac_configure_extra_args --silent" ++fi ++ ++_ACEOF ++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ++if \$ac_cs_recheck; then ++ set X '$SHELL' '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion ++ shift ++ \$as_echo "running CONFIG_SHELL=$SHELL \$*" >&6 ++ CONFIG_SHELL='$SHELL' ++ export CONFIG_SHELL ++ exec "\$@" ++fi ++ ++_ACEOF ++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 ++exec 5>>config.log ++{ ++ echo ++ sed 'h;s/./-/g;s/^.../@%:@@%:@ /;s/...$/ @%:@@%:@/;p;x;p;x' <<_ASBOX ++@%:@@%:@ Running $as_me. @%:@@%:@ ++_ASBOX ++ $as_echo "$ac_log" ++} >&5 ++ ++_ACEOF ++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ++# ++# INIT-COMMANDS ++# ++AMDEP_TRUE="$AMDEP_TRUE" ac_aux_dir="$ac_aux_dir" ++ ++ ++# The HP-UX ksh and POSIX shell print the target directory to stdout ++# if CDPATH is set. ++(unset CDPATH) >/dev/null 2>&1 && unset CDPATH ++ ++sed_quote_subst='$sed_quote_subst' ++double_quote_subst='$double_quote_subst' ++delay_variable_subst='$delay_variable_subst' ++macro_version='`$ECHO "X$macro_version" | $Xsed -e "$delay_single_quote_subst"`' ++macro_revision='`$ECHO "X$macro_revision" | $Xsed -e "$delay_single_quote_subst"`' ++enable_shared='`$ECHO "X$enable_shared" | $Xsed -e "$delay_single_quote_subst"`' ++enable_static='`$ECHO "X$enable_static" | $Xsed -e "$delay_single_quote_subst"`' ++pic_mode='`$ECHO "X$pic_mode" | $Xsed -e "$delay_single_quote_subst"`' ++enable_fast_install='`$ECHO "X$enable_fast_install" | $Xsed -e "$delay_single_quote_subst"`' ++host_alias='`$ECHO "X$host_alias" | $Xsed -e "$delay_single_quote_subst"`' ++host='`$ECHO "X$host" | $Xsed -e "$delay_single_quote_subst"`' ++host_os='`$ECHO "X$host_os" | $Xsed -e "$delay_single_quote_subst"`' ++build_alias='`$ECHO "X$build_alias" | $Xsed -e "$delay_single_quote_subst"`' ++build='`$ECHO "X$build" | $Xsed -e "$delay_single_quote_subst"`' ++build_os='`$ECHO "X$build_os" | $Xsed -e "$delay_single_quote_subst"`' ++SED='`$ECHO "X$SED" | $Xsed -e "$delay_single_quote_subst"`' ++Xsed='`$ECHO "X$Xsed" | $Xsed -e "$delay_single_quote_subst"`' ++GREP='`$ECHO "X$GREP" | $Xsed -e "$delay_single_quote_subst"`' ++EGREP='`$ECHO "X$EGREP" | $Xsed -e "$delay_single_quote_subst"`' ++FGREP='`$ECHO "X$FGREP" | $Xsed -e "$delay_single_quote_subst"`' ++LD='`$ECHO "X$LD" | $Xsed -e "$delay_single_quote_subst"`' ++NM='`$ECHO "X$NM" | $Xsed -e "$delay_single_quote_subst"`' ++LN_S='`$ECHO "X$LN_S" | $Xsed -e "$delay_single_quote_subst"`' ++max_cmd_len='`$ECHO "X$max_cmd_len" | $Xsed -e "$delay_single_quote_subst"`' ++ac_objext='`$ECHO "X$ac_objext" | $Xsed -e "$delay_single_quote_subst"`' ++exeext='`$ECHO "X$exeext" | $Xsed -e "$delay_single_quote_subst"`' ++lt_unset='`$ECHO "X$lt_unset" | $Xsed -e "$delay_single_quote_subst"`' ++lt_SP2NL='`$ECHO "X$lt_SP2NL" | $Xsed -e "$delay_single_quote_subst"`' ++lt_NL2SP='`$ECHO "X$lt_NL2SP" | $Xsed -e "$delay_single_quote_subst"`' ++reload_flag='`$ECHO "X$reload_flag" | $Xsed -e "$delay_single_quote_subst"`' ++reload_cmds='`$ECHO "X$reload_cmds" | $Xsed -e "$delay_single_quote_subst"`' ++OBJDUMP='`$ECHO "X$OBJDUMP" | $Xsed -e "$delay_single_quote_subst"`' ++deplibs_check_method='`$ECHO "X$deplibs_check_method" | $Xsed -e "$delay_single_quote_subst"`' ++file_magic_cmd='`$ECHO "X$file_magic_cmd" | $Xsed -e "$delay_single_quote_subst"`' ++AR='`$ECHO "X$AR" | $Xsed -e "$delay_single_quote_subst"`' ++AR_FLAGS='`$ECHO "X$AR_FLAGS" | $Xsed -e "$delay_single_quote_subst"`' ++STRIP='`$ECHO "X$STRIP" | $Xsed -e "$delay_single_quote_subst"`' ++RANLIB='`$ECHO "X$RANLIB" | $Xsed -e "$delay_single_quote_subst"`' ++old_postinstall_cmds='`$ECHO "X$old_postinstall_cmds" | $Xsed -e "$delay_single_quote_subst"`' ++old_postuninstall_cmds='`$ECHO "X$old_postuninstall_cmds" | $Xsed -e "$delay_single_quote_subst"`' ++old_archive_cmds='`$ECHO "X$old_archive_cmds" | $Xsed -e "$delay_single_quote_subst"`' ++CC='`$ECHO "X$CC" | $Xsed -e "$delay_single_quote_subst"`' ++CFLAGS='`$ECHO "X$CFLAGS" | $Xsed -e "$delay_single_quote_subst"`' ++compiler='`$ECHO "X$compiler" | $Xsed -e "$delay_single_quote_subst"`' ++GCC='`$ECHO "X$GCC" | $Xsed -e "$delay_single_quote_subst"`' ++lt_cv_sys_global_symbol_pipe='`$ECHO "X$lt_cv_sys_global_symbol_pipe" | $Xsed -e 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-e "$delay_single_quote_subst"`' ++with_gnu_ld='`$ECHO "X$with_gnu_ld" | $Xsed -e "$delay_single_quote_subst"`' ++allow_undefined_flag='`$ECHO "X$allow_undefined_flag" | $Xsed -e "$delay_single_quote_subst"`' ++no_undefined_flag='`$ECHO "X$no_undefined_flag" | $Xsed -e "$delay_single_quote_subst"`' ++hardcode_libdir_flag_spec='`$ECHO "X$hardcode_libdir_flag_spec" | $Xsed -e "$delay_single_quote_subst"`' ++hardcode_libdir_flag_spec_ld='`$ECHO "X$hardcode_libdir_flag_spec_ld" | $Xsed -e "$delay_single_quote_subst"`' ++hardcode_libdir_separator='`$ECHO "X$hardcode_libdir_separator" | $Xsed -e "$delay_single_quote_subst"`' ++hardcode_direct='`$ECHO "X$hardcode_direct" | $Xsed -e "$delay_single_quote_subst"`' ++hardcode_direct_absolute='`$ECHO "X$hardcode_direct_absolute" | $Xsed -e "$delay_single_quote_subst"`' ++hardcode_minus_L='`$ECHO "X$hardcode_minus_L" | $Xsed -e "$delay_single_quote_subst"`' ++hardcode_shlibpath_var='`$ECHO "X$hardcode_shlibpath_var" | $Xsed -e "$delay_single_quote_subst"`' ++hardcode_automatic='`$ECHO "X$hardcode_automatic" | $Xsed -e "$delay_single_quote_subst"`' ++inherit_rpath='`$ECHO "X$inherit_rpath" | $Xsed -e "$delay_single_quote_subst"`' ++link_all_deplibs='`$ECHO "X$link_all_deplibs" | $Xsed -e "$delay_single_quote_subst"`' ++fix_srcfile_path='`$ECHO "X$fix_srcfile_path" | $Xsed -e "$delay_single_quote_subst"`' ++always_export_symbols='`$ECHO "X$always_export_symbols" | $Xsed -e "$delay_single_quote_subst"`' ++export_symbols_cmds='`$ECHO "X$export_symbols_cmds" | $Xsed -e "$delay_single_quote_subst"`' ++exclude_expsyms='`$ECHO "X$exclude_expsyms" | $Xsed -e "$delay_single_quote_subst"`' ++include_expsyms='`$ECHO "X$include_expsyms" | $Xsed -e "$delay_single_quote_subst"`' ++prelink_cmds='`$ECHO "X$prelink_cmds" | $Xsed -e "$delay_single_quote_subst"`' ++file_list_spec='`$ECHO "X$file_list_spec" | $Xsed -e "$delay_single_quote_subst"`' ++variables_saved_for_relink='`$ECHO "X$variables_saved_for_relink" | $Xsed -e "$delay_single_quote_subst"`' ++need_lib_prefix='`$ECHO "X$need_lib_prefix" | $Xsed -e "$delay_single_quote_subst"`' ++need_version='`$ECHO "X$need_version" | $Xsed -e "$delay_single_quote_subst"`' ++version_type='`$ECHO "X$version_type" | $Xsed -e "$delay_single_quote_subst"`' ++runpath_var='`$ECHO "X$runpath_var" | $Xsed -e "$delay_single_quote_subst"`' ++shlibpath_var='`$ECHO "X$shlibpath_var" | $Xsed -e "$delay_single_quote_subst"`' ++shlibpath_overrides_runpath='`$ECHO "X$shlibpath_overrides_runpath" | $Xsed -e "$delay_single_quote_subst"`' ++libname_spec='`$ECHO "X$libname_spec" | $Xsed -e "$delay_single_quote_subst"`' ++library_names_spec='`$ECHO "X$library_names_spec" | $Xsed -e "$delay_single_quote_subst"`' ++soname_spec='`$ECHO "X$soname_spec" | $Xsed -e "$delay_single_quote_subst"`' ++postinstall_cmds='`$ECHO "X$postinstall_cmds" | $Xsed -e "$delay_single_quote_subst"`' ++postuninstall_cmds='`$ECHO "X$postuninstall_cmds" | $Xsed -e "$delay_single_quote_subst"`' ++finish_cmds='`$ECHO "X$finish_cmds" | $Xsed -e "$delay_single_quote_subst"`' ++finish_eval='`$ECHO "X$finish_eval" | $Xsed -e "$delay_single_quote_subst"`' ++hardcode_into_libs='`$ECHO "X$hardcode_into_libs" | $Xsed -e "$delay_single_quote_subst"`' ++sys_lib_search_path_spec='`$ECHO "X$sys_lib_search_path_spec" | $Xsed -e "$delay_single_quote_subst"`' ++sys_lib_dlsearch_path_spec='`$ECHO "X$sys_lib_dlsearch_path_spec" | $Xsed -e "$delay_single_quote_subst"`' ++hardcode_action='`$ECHO "X$hardcode_action" | $Xsed -e "$delay_single_quote_subst"`' ++enable_dlopen='`$ECHO "X$enable_dlopen" | $Xsed -e "$delay_single_quote_subst"`' ++enable_dlopen_self='`$ECHO "X$enable_dlopen_self" | $Xsed -e "$delay_single_quote_subst"`' ++enable_dlopen_self_static='`$ECHO "X$enable_dlopen_self_static" | $Xsed -e "$delay_single_quote_subst"`' ++old_striplib='`$ECHO "X$old_striplib" | $Xsed -e "$delay_single_quote_subst"`' ++striplib='`$ECHO "X$striplib" | $Xsed -e "$delay_single_quote_subst"`' ++ ++LTCC='$LTCC' ++LTCFLAGS='$LTCFLAGS' ++compiler='$compiler_DEFAULT' ++ ++# Quote evaled strings. ++for var in SED \ ++GREP \ ++EGREP \ ++FGREP \ ++LD \ ++NM \ ++LN_S \ ++lt_SP2NL \ ++lt_NL2SP \ ++reload_flag \ ++OBJDUMP \ ++deplibs_check_method \ ++file_magic_cmd \ ++AR \ ++AR_FLAGS \ ++STRIP \ ++RANLIB \ ++CC \ ++CFLAGS \ ++compiler \ ++lt_cv_sys_global_symbol_pipe \ ++lt_cv_sys_global_symbol_to_cdecl \ ++lt_cv_sys_global_symbol_to_c_name_address \ ++lt_cv_sys_global_symbol_to_c_name_address_lib_prefix \ ++SHELL \ ++ECHO \ ++lt_prog_compiler_no_builtin_flag \ ++lt_prog_compiler_wl \ ++lt_prog_compiler_pic \ ++lt_prog_compiler_static \ ++lt_cv_prog_compiler_c_o \ ++need_locks \ ++DSYMUTIL \ ++NMEDIT \ ++LIPO \ ++OTOOL \ ++OTOOL64 \ ++shrext_cmds \ ++export_dynamic_flag_spec \ ++whole_archive_flag_spec \ ++compiler_needs_object \ ++with_gnu_ld \ ++allow_undefined_flag \ ++no_undefined_flag \ ++hardcode_libdir_flag_spec \ ++hardcode_libdir_flag_spec_ld \ ++hardcode_libdir_separator \ ++fix_srcfile_path \ ++exclude_expsyms \ ++include_expsyms \ ++file_list_spec \ ++variables_saved_for_relink \ ++libname_spec \ ++library_names_spec \ ++soname_spec \ ++finish_eval \ ++old_striplib \ ++striplib; do ++ case \`eval \\\\\$ECHO "X\\\\\$\$var"\` in ++ *[\\\\\\\`\\"\\\$]*) ++ eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"X\\\$\$var\\" | \\\$Xsed -e \\"\\\$sed_quote_subst\\"\\\`\\\\\\"" ++ ;; ++ *) ++ eval "lt_\$var=\\\\\\"\\\$\$var\\\\\\"" ++ ;; ++ esac ++done ++ ++# Double-quote double-evaled strings. ++for var in reload_cmds \ ++old_postinstall_cmds \ ++old_postuninstall_cmds \ ++old_archive_cmds \ ++extract_expsyms_cmds \ ++old_archive_from_new_cmds \ ++old_archive_from_expsyms_cmds \ ++archive_cmds \ ++archive_expsym_cmds \ ++module_cmds \ ++module_expsym_cmds \ ++export_symbols_cmds \ ++prelink_cmds \ ++postinstall_cmds \ ++postuninstall_cmds \ ++finish_cmds \ ++sys_lib_search_path_spec \ ++sys_lib_dlsearch_path_spec; do ++ case \`eval \\\\\$ECHO "X\\\\\$\$var"\` in ++ *[\\\\\\\`\\"\\\$]*) ++ eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"X\\\$\$var\\" | \\\$Xsed -e \\"\\\$double_quote_subst\\" -e \\"\\\$sed_quote_subst\\" -e \\"\\\$delay_variable_subst\\"\\\`\\\\\\"" ++ ;; ++ *) ++ eval "lt_\$var=\\\\\\"\\\$\$var\\\\\\"" ++ ;; ++ esac ++done ++ ++# Fix-up fallback echo if it was mangled by the above quoting rules. ++case \$lt_ECHO in ++*'\\\$0 --fallback-echo"') lt_ECHO=\`\$ECHO "X\$lt_ECHO" | \$Xsed -e 's/\\\\\\\\\\\\\\\$0 --fallback-echo"\$/\$0 --fallback-echo"/'\` ++ ;; ++esac ++ ++ac_aux_dir='$ac_aux_dir' ++xsi_shell='$xsi_shell' ++lt_shell_append='$lt_shell_append' ++ ++# See if we are running on zsh, and set the options which allow our ++# commands through without removal of \ escapes INIT. ++if test -n "\${ZSH_VERSION+set}" ; then ++ setopt NO_GLOB_SUBST ++fi ++ ++ ++ PACKAGE='$PACKAGE' ++ VERSION='$VERSION' ++ TIMESTAMP='$TIMESTAMP' ++ RM='$RM' ++ ofile='$ofile' ++ ++ ++ ++ ++_ACEOF ++ ++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 ++ ++# Handling of arguments. ++for ac_config_target in $ac_config_targets ++do ++ case $ac_config_target in ++ "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;; ++ "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;; ++ "nucleus/Makefile") CONFIG_FILES="$CONFIG_FILES nucleus/Makefile" ;; ++ "ajax/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/Makefile" ;; ++ "ajax/core/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/core/Makefile" ;; ++ "ajax/graphics/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/graphics/Makefile" ;; ++ "ajax/ensembl/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/ensembl/Makefile" ;; ++ "ajax/ajaxdb/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/ajaxdb/Makefile" ;; ++ "ajax/acd/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/acd/Makefile" ;; ++ "emboss/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/Makefile" ;; ++ "emboss/acd/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/acd/Makefile" ;; ++ "test/Makefile") CONFIG_FILES="$CONFIG_FILES test/Makefile" ;; ++ "test/data/Makefile") CONFIG_FILES="$CONFIG_FILES test/data/Makefile" ;; ++ "test/embl/Makefile") CONFIG_FILES="$CONFIG_FILES test/embl/Makefile" ;; ++ "test/genbank/Makefile") CONFIG_FILES="$CONFIG_FILES test/genbank/Makefile" ;; ++ "test/pir/Makefile") CONFIG_FILES="$CONFIG_FILES test/pir/Makefile" ;; ++ "test/swiss/Makefile") CONFIG_FILES="$CONFIG_FILES test/swiss/Makefile" ;; ++ "test/swnew/Makefile") CONFIG_FILES="$CONFIG_FILES test/swnew/Makefile" ;; ++ "test/testdb/Makefile") CONFIG_FILES="$CONFIG_FILES test/testdb/Makefile" ;; ++ "emboss/data/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/Makefile" ;; ++ "emboss/data/AAINDEX/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/AAINDEX/Makefile" ;; ++ "emboss/data/CODONS/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/CODONS/Makefile" ;; ++ "emboss/data/REBASE/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/REBASE/Makefile" ;; ++ "emboss/data/JASPAR_CORE/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/JASPAR_CORE/Makefile" ;; ++ "emboss/data/JASPAR_FAM/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/JASPAR_FAM/Makefile" ;; ++ "emboss/data/JASPAR_PHYLOFACTS/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/JASPAR_PHYLOFACTS/Makefile" ;; ++ "emboss/data/JASPAR_CNE/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/JASPAR_CNE/Makefile" ;; ++ "emboss/data/JASPAR_POLII/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/JASPAR_POLII/Makefile" ;; ++ "emboss/data/JASPAR_SPLICE/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/JASPAR_SPLICE/Makefile" ;; ++ "emboss/data/JASPAR_PBM/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/JASPAR_PBM/Makefile" ;; ++ "emboss/data/JASPAR_PBM_HLH/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/JASPAR_PBM_HLH/Makefile" ;; ++ "emboss/data/JASPAR_PBM_HOMEO/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/JASPAR_PBM_HOMEO/Makefile" ;; ++ "emboss/data/PRINTS/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/PRINTS/Makefile" ;; ++ "emboss/data/PROSITE/Makefile") CONFIG_FILES="$CONFIG_FILES emboss/data/PROSITE/Makefile" ;; ++ "doc/Makefile") CONFIG_FILES="$CONFIG_FILES doc/Makefile" ;; ++ "doc/manuals/Makefile") CONFIG_FILES="$CONFIG_FILES doc/manuals/Makefile" ;; ++ "doc/tutorials/Makefile") CONFIG_FILES="$CONFIG_FILES doc/tutorials/Makefile" ;; ++ "doc/programs/Makefile") CONFIG_FILES="$CONFIG_FILES doc/programs/Makefile" ;; ++ "doc/programs/html/Makefile") CONFIG_FILES="$CONFIG_FILES doc/programs/html/Makefile" ;; ++ "doc/programs/text/Makefile") CONFIG_FILES="$CONFIG_FILES doc/programs/text/Makefile" ;; ++ "jemboss/Makefile") CONFIG_FILES="$CONFIG_FILES jemboss/Makefile" ;; ++ "jemboss/images/Makefile") CONFIG_FILES="$CONFIG_FILES jemboss/images/Makefile" ;; ++ "jemboss/lib/Makefile") CONFIG_FILES="$CONFIG_FILES jemboss/lib/Makefile" ;; ++ "jemboss/lib/axis/Makefile") CONFIG_FILES="$CONFIG_FILES jemboss/lib/axis/Makefile" ;; ++ "jemboss/resources/Makefile") CONFIG_FILES="$CONFIG_FILES jemboss/resources/Makefile" ;; ++ "jemboss/utils/Makefile") CONFIG_FILES="$CONFIG_FILES jemboss/utils/Makefile" ;; ++ "Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;; ++ ++ *) as_fn_error "invalid argument: \`$ac_config_target'" "$LINENO" 5;; ++ esac ++done ++ ++ ++# If the user did not use the arguments to specify the items to instantiate, ++# then the envvar interface is used. Set only those that are not. ++# We use the long form for the default assignment because of an extremely ++# bizarre bug on SunOS 4.1.3. ++if $ac_need_defaults; then ++ test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files ++ test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands ++fi ++ ++# Have a temporary directory for convenience. Make it in the build tree ++# simply because there is no reason against having it here, and in addition, ++# creating and moving files from /tmp can sometimes cause problems. ++# Hook for its removal unless debugging. ++# Note that there is a small window in which the directory will not be cleaned: ++# after its creation but before its name has been assigned to `$tmp'. ++$debug || ++{ ++ tmp= ++ trap 'exit_status=$? ++ { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status ++' 0 ++ trap 'as_fn_exit 1' 1 2 13 15 ++} ++# Create a (secure) tmp directory for tmp files. ++ ++{ ++ tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` && ++ test -n "$tmp" && test -d "$tmp" ++} || ++{ ++ tmp=./conf$$-$RANDOM ++ (umask 077 && mkdir "$tmp") ++} || as_fn_error "cannot create a temporary directory in ." "$LINENO" 5 ++ ++# Set up the scripts for CONFIG_FILES section. ++# No need to generate them if there are no CONFIG_FILES. ++# This happens for instance with `./config.status config.h'. ++if test -n "$CONFIG_FILES"; then ++ ++ ++ac_cr=`echo X | tr X '\015'` ++# On cygwin, bash can eat \r inside `` if the user requested igncr. ++# But we know of no other shell where ac_cr would be empty at this ++# point, so we can use a bashism as a fallback. ++if test "x$ac_cr" = x; then ++ eval ac_cr=\$\'\\r\' ++fi ++ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' /dev/null` ++if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then ++ ac_cs_awk_cr='\r' ++else ++ ac_cs_awk_cr=$ac_cr ++fi ++ ++echo 'BEGIN {' >"$tmp/subs1.awk" && ++_ACEOF ++ ++ ++{ ++ echo "cat >conf$$subs.awk <<_ACEOF" && ++ echo "$ac_subst_vars" | sed 's/.*/&!$&$ac_delim/' && ++ echo "_ACEOF" ++} >conf$$subs.sh || ++ as_fn_error "could not make $CONFIG_STATUS" "$LINENO" 5 ++ac_delim_num=`echo "$ac_subst_vars" | grep -c '$'` ++ac_delim='%!_!# ' ++for ac_last_try in false false false false false :; do ++ . ./conf$$subs.sh || ++ as_fn_error "could not make $CONFIG_STATUS" "$LINENO" 5 ++ ++ ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X` ++ if test $ac_delim_n = $ac_delim_num; then ++ break ++ elif $ac_last_try; then ++ as_fn_error "could not make $CONFIG_STATUS" "$LINENO" 5 ++ else ++ ac_delim="$ac_delim!$ac_delim _$ac_delim!! " ++ fi ++done ++rm -f conf$$subs.sh ++ ++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ++cat >>"\$tmp/subs1.awk" <<\\_ACAWK && ++_ACEOF ++sed -n ' ++h ++s/^/S["/; s/!.*/"]=/ ++p ++g ++s/^[^!]*!// ++:repl ++t repl ++s/'"$ac_delim"'$// ++t delim ++:nl ++h ++s/\(.\{148\}\)..*/\1/ ++t more1 ++s/["\\]/\\&/g; s/^/"/; s/$/\\n"\\/ ++p ++n ++b repl ++:more1 ++s/["\\]/\\&/g; s/^/"/; s/$/"\\/ ++p ++g ++s/.\{148\}// ++t nl ++:delim ++h ++s/\(.\{148\}\)..*/\1/ ++t more2 ++s/["\\]/\\&/g; s/^/"/; s/$/"/ ++p ++b ++:more2 ++s/["\\]/\\&/g; s/^/"/; s/$/"\\/ ++p ++g ++s/.\{148\}// ++t delim ++' >$CONFIG_STATUS || ac_write_fail=1 ++rm -f conf$$subs.awk ++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1 ++_ACAWK ++cat >>"\$tmp/subs1.awk" <<_ACAWK && ++ for (key in S) S_is_set[key] = 1 ++ FS = "" ++ ++} ++{ ++ line = $ 0 ++ nfields = split(line, field, "@") ++ substed = 0 ++ len = length(field[1]) ++ for (i = 2; i < nfields; i++) { ++ key = field[i] ++ keylen = length(key) ++ if (S_is_set[key]) { ++ value = S[key] ++ line = substr(line, 1, len) "" value "" substr(line, len + keylen + 3) ++ len += length(value) + length(field[++i]) ++ substed = 1 ++ } else ++ len += 1 + keylen ++ } ++ ++ print line ++} ++ ++_ACAWK ++_ACEOF ++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 ++if sed "s/$ac_cr//" < /dev/null > /dev/null 2>&1; then ++ sed "s/$ac_cr\$//; s/$ac_cr/$ac_cs_awk_cr/g" ++else ++ cat ++fi < "$tmp/subs1.awk" > "$tmp/subs.awk" \ ++ || as_fn_error "could not setup config files machinery" "$LINENO" 5 ++_ACEOF ++ ++# VPATH may cause trouble with some makes, so we remove $(srcdir), ++# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and ++# trailing colons and then remove the whole line if VPATH becomes empty ++# (actually we leave an empty line to preserve line numbers). ++if test "x$srcdir" = x.; then ++ ac_vpsub='/^[ ]*VPATH[ ]*=/{ ++s/:*\$(srcdir):*/:/ ++s/:*\${srcdir}:*/:/ ++s/:*@srcdir@:*/:/ ++s/^\([^=]*=[ ]*\):*/\1/ ++s/:*$// ++s/^[^=]*=[ ]*$// ++}' ++fi ++ ++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1 ++fi # test -n "$CONFIG_FILES" ++ ++ ++eval set X " :F $CONFIG_FILES :C $CONFIG_COMMANDS" ++shift ++for ac_tag ++do ++ case $ac_tag in ++ :[FHLC]) ac_mode=$ac_tag; continue;; ++ esac ++ case $ac_mode$ac_tag in ++ :[FHL]*:*);; ++ :L* | :C*:*) as_fn_error "invalid tag \`$ac_tag'" "$LINENO" 5;; ++ :[FH]-) ac_tag=-:-;; ++ :[FH]*) ac_tag=$ac_tag:$ac_tag.in;; ++ esac ++ ac_save_IFS=$IFS ++ IFS=: ++ set x $ac_tag ++ IFS=$ac_save_IFS ++ shift ++ ac_file=$1 ++ shift ++ ++ case $ac_mode in ++ :L) ac_source=$1;; ++ :[FH]) ++ ac_file_inputs= ++ for ac_f ++ do ++ case $ac_f in ++ -) ac_f="$tmp/stdin";; ++ *) # Look for the file first in the build tree, then in the source tree ++ # (if the path is not absolute). The absolute path cannot be DOS-style, ++ # because $ac_f cannot contain `:'. ++ test -f "$ac_f" || ++ case $ac_f in ++ [\\/$]*) false;; ++ *) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";; ++ esac || ++ as_fn_error "cannot find input file: \`$ac_f'" "$LINENO" 5;; ++ esac ++ case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac ++ as_fn_append ac_file_inputs " '$ac_f'" ++ done ++ ++ # Let's still pretend it is `configure' which instantiates (i.e., don't ++ # use $as_me), people would be surprised to read: ++ # /* config.h. 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See the ++# GNU General Public License for more details. ++# ++# You should have received a copy of the GNU General Public License ++# along with GNU Libtool; see the file COPYING. If not, a copy ++# can be downloaded from http://www.gnu.org/licenses/gpl.html, or ++# obtained by writing to the Free Software Foundation, Inc., ++# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. ++ ++ ++# The names of the tagged configurations supported by this script. ++available_tags="" ++ ++# ### BEGIN LIBTOOL CONFIG ++ ++# Which release of libtool.m4 was used? ++macro_version=$macro_version ++macro_revision=$macro_revision ++ ++# Whether or not to build shared libraries. ++build_libtool_libs=$enable_shared ++ ++# Whether or not to build static libraries. ++build_old_libs=$enable_static ++ ++# What type of objects to build. ++pic_mode=$pic_mode ++ ++# Whether or not to optimize for fast installation. ++fast_install=$enable_fast_install ++ ++# The host system. ++host_alias=$host_alias ++host=$host ++host_os=$host_os ++ ++# The build system. ++build_alias=$build_alias ++build=$build ++build_os=$build_os ++ ++# A sed program that does not truncate output. ++SED=$lt_SED ++ ++# Sed that helps us avoid accidentally triggering echo(1) options like -n. ++Xsed="\$SED -e 1s/^X//" ++ ++# A grep program that handles long lines. ++GREP=$lt_GREP ++ ++# An ERE matcher. ++EGREP=$lt_EGREP ++ ++# A literal string matcher. ++FGREP=$lt_FGREP ++ ++# A BSD- or MS-compatible name lister. ++NM=$lt_NM ++ ++# Whether we need soft or hard links. ++LN_S=$lt_LN_S ++ ++# What is the maximum length of a command? ++max_cmd_len=$max_cmd_len ++ ++# Object file suffix (normally "o"). ++objext=$ac_objext ++ ++# Executable file suffix (normally ""). ++exeext=$exeext ++ ++# whether the shell understands "unset". ++lt_unset=$lt_unset ++ ++# turn spaces into newlines. ++SP2NL=$lt_lt_SP2NL ++ ++# turn newlines into spaces. ++NL2SP=$lt_lt_NL2SP ++ ++# How to create reloadable object files. ++reload_flag=$lt_reload_flag ++reload_cmds=$lt_reload_cmds ++ ++# An object symbol dumper. ++OBJDUMP=$lt_OBJDUMP ++ ++# Method to check whether dependent libraries are shared objects. ++deplibs_check_method=$lt_deplibs_check_method ++ ++# Command to use when deplibs_check_method == "file_magic". ++file_magic_cmd=$lt_file_magic_cmd ++ ++# The archiver. ++AR=$lt_AR ++AR_FLAGS=$lt_AR_FLAGS ++ ++# A symbol stripping program. ++STRIP=$lt_STRIP ++ ++# Commands used to install an old-style archive. ++RANLIB=$lt_RANLIB ++old_postinstall_cmds=$lt_old_postinstall_cmds ++old_postuninstall_cmds=$lt_old_postuninstall_cmds ++ ++# A C compiler. ++LTCC=$lt_CC ++ ++# LTCC compiler flags. ++LTCFLAGS=$lt_CFLAGS ++ ++# Take the output of nm and produce a listing of raw symbols and C names. ++global_symbol_pipe=$lt_lt_cv_sys_global_symbol_pipe ++ ++# Transform the output of nm in a proper C declaration. ++global_symbol_to_cdecl=$lt_lt_cv_sys_global_symbol_to_cdecl ++ ++# Transform the output of nm in a C name address pair. ++global_symbol_to_c_name_address=$lt_lt_cv_sys_global_symbol_to_c_name_address ++ ++# Transform the output of nm in a C name address pair when lib prefix is needed. ++global_symbol_to_c_name_address_lib_prefix=$lt_lt_cv_sys_global_symbol_to_c_name_address_lib_prefix ++ ++# The name of the directory that contains temporary libtool files. ++objdir=$objdir ++ ++# Shell to use when invoking shell scripts. ++SHELL=$lt_SHELL ++ ++# An echo program that does not interpret backslashes. ++ECHO=$lt_ECHO ++ ++# Used to examine libraries when file_magic_cmd begins with "file". ++MAGIC_CMD=$MAGIC_CMD ++ ++# Must we lock files when doing compilation? ++need_locks=$lt_need_locks ++ ++# Tool to manipulate archived DWARF debug symbol files on Mac OS X. ++DSYMUTIL=$lt_DSYMUTIL ++ ++# Tool to change global to local symbols on Mac OS X. ++NMEDIT=$lt_NMEDIT ++ ++# Tool to manipulate fat objects and archives on Mac OS X. ++LIPO=$lt_LIPO ++ ++# ldd/readelf like tool for Mach-O binaries on Mac OS X. ++OTOOL=$lt_OTOOL ++ ++# ldd/readelf like tool for 64 bit Mach-O binaries on Mac OS X 10.4. ++OTOOL64=$lt_OTOOL64 ++ ++# Old archive suffix (normally "a"). ++libext=$libext ++ ++# Shared library suffix (normally ".so"). ++shrext_cmds=$lt_shrext_cmds ++ ++# The commands to extract the exported symbol list from a shared archive. ++extract_expsyms_cmds=$lt_extract_expsyms_cmds ++ ++# Variables whose values should be saved in libtool wrapper scripts and ++# restored at link time. ++variables_saved_for_relink=$lt_variables_saved_for_relink ++ ++# Do we need the "lib" prefix for modules? ++need_lib_prefix=$need_lib_prefix ++ ++# Do we need a version for libraries? ++need_version=$need_version ++ ++# Library versioning type. ++version_type=$version_type ++ ++# Shared library runtime path variable. ++runpath_var=$runpath_var ++ ++# Shared library path variable. ++shlibpath_var=$shlibpath_var ++ ++# Is shlibpath searched before the hard-coded library search path? ++shlibpath_overrides_runpath=$shlibpath_overrides_runpath ++ ++# Format of library name prefix. ++libname_spec=$lt_libname_spec ++ ++# List of archive names. First name is the real one, the rest are links. ++# The last name is the one that the linker finds with -lNAME ++library_names_spec=$lt_library_names_spec ++ ++# The coded name of the library, if different from the real name. ++soname_spec=$lt_soname_spec ++ ++# Command to use after installation of a shared archive. ++postinstall_cmds=$lt_postinstall_cmds ++ ++# Command to use after uninstallation of a shared archive. ++postuninstall_cmds=$lt_postuninstall_cmds ++ ++# Commands used to finish a libtool library installation in a directory. ++finish_cmds=$lt_finish_cmds ++ ++# As "finish_cmds", except a single script fragment to be evaled but ++# not shown. ++finish_eval=$lt_finish_eval ++ ++# Whether we should hardcode library paths into libraries. ++hardcode_into_libs=$hardcode_into_libs ++ ++# Compile-time system search path for libraries. ++sys_lib_search_path_spec=$lt_sys_lib_search_path_spec ++ ++# Run-time system search path for libraries. ++sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec ++ ++# Whether dlopen is supported. ++dlopen_support=$enable_dlopen ++ ++# Whether dlopen of programs is supported. ++dlopen_self=$enable_dlopen_self ++ ++# Whether dlopen of statically linked programs is supported. ++dlopen_self_static=$enable_dlopen_self_static ++ ++# Commands to strip libraries. ++old_striplib=$lt_old_striplib ++striplib=$lt_striplib ++ ++ ++# The linker used to build libraries. ++LD=$lt_LD ++ ++# Commands used to build an old-style archive. ++old_archive_cmds=$lt_old_archive_cmds ++ ++# A language specific compiler. ++CC=$lt_compiler ++ ++# Is the compiler the GNU compiler? ++with_gcc=$GCC ++ ++# Compiler flag to turn off builtin functions. ++no_builtin_flag=$lt_lt_prog_compiler_no_builtin_flag ++ ++# How to pass a linker flag through the compiler. ++wl=$lt_lt_prog_compiler_wl ++ ++# Additional compiler flags for building library objects. ++pic_flag=$lt_lt_prog_compiler_pic ++ ++# Compiler flag to prevent dynamic linking. ++link_static_flag=$lt_lt_prog_compiler_static ++ ++# Does compiler simultaneously support -c and -o options? ++compiler_c_o=$lt_lt_cv_prog_compiler_c_o ++ ++# Whether or not to add -lc for building shared libraries. ++build_libtool_need_lc=$archive_cmds_need_lc ++ ++# Whether or not to disallow shared libs when runtime libs are static. ++allow_libtool_libs_with_static_runtimes=$enable_shared_with_static_runtimes ++ ++# Compiler flag to allow reflexive dlopens. ++export_dynamic_flag_spec=$lt_export_dynamic_flag_spec ++ ++# Compiler flag to generate shared objects directly from archives. ++whole_archive_flag_spec=$lt_whole_archive_flag_spec ++ ++# Whether the compiler copes with passing no objects directly. ++compiler_needs_object=$lt_compiler_needs_object ++ ++# Create an old-style archive from a shared archive. ++old_archive_from_new_cmds=$lt_old_archive_from_new_cmds ++ ++# Create a temporary old-style archive to link instead of a shared archive. ++old_archive_from_expsyms_cmds=$lt_old_archive_from_expsyms_cmds ++ ++# Commands used to build a shared archive. ++archive_cmds=$lt_archive_cmds ++archive_expsym_cmds=$lt_archive_expsym_cmds ++ ++# Commands used to build a loadable module if different from building ++# a shared archive. ++module_cmds=$lt_module_cmds ++module_expsym_cmds=$lt_module_expsym_cmds ++ ++# Whether we are building with GNU ld or not. ++with_gnu_ld=$lt_with_gnu_ld ++ ++# Flag that allows shared libraries with undefined symbols to be built. ++allow_undefined_flag=$lt_allow_undefined_flag ++ ++# Flag that enforces no undefined symbols. ++no_undefined_flag=$lt_no_undefined_flag ++ ++# Flag to hardcode \$libdir into a binary during linking. ++# This must work even if \$libdir does not exist ++hardcode_libdir_flag_spec=$lt_hardcode_libdir_flag_spec ++ ++# If ld is used when linking, flag to hardcode \$libdir into a binary ++# during linking. This must work even if \$libdir does not exist. ++hardcode_libdir_flag_spec_ld=$lt_hardcode_libdir_flag_spec_ld ++ ++# Whether we need a single "-rpath" flag with a separated argument. ++hardcode_libdir_separator=$lt_hardcode_libdir_separator ++ ++# Set to "yes" if using DIR/libNAME\${shared_ext} during linking hardcodes ++# DIR into the resulting binary. ++hardcode_direct=$hardcode_direct ++ ++# Set to "yes" if using DIR/libNAME\${shared_ext} during linking hardcodes ++# DIR into the resulting binary and the resulting library dependency is ++# "absolute",i.e impossible to change by setting \${shlibpath_var} if the ++# library is relocated. ++hardcode_direct_absolute=$hardcode_direct_absolute ++ ++# Set to "yes" if using the -LDIR flag during linking hardcodes DIR ++# into the resulting binary. ++hardcode_minus_L=$hardcode_minus_L ++ ++# Set to "yes" if using SHLIBPATH_VAR=DIR during linking hardcodes DIR ++# into the resulting binary. ++hardcode_shlibpath_var=$hardcode_shlibpath_var ++ ++# Set to "yes" if building a shared library automatically hardcodes DIR ++# into the library and all subsequent libraries and executables linked ++# against it. ++hardcode_automatic=$hardcode_automatic ++ ++# Set to yes if linker adds runtime paths of dependent libraries ++# to runtime path list. ++inherit_rpath=$inherit_rpath ++ ++# Whether libtool must link a program against all its dependency libraries. ++link_all_deplibs=$link_all_deplibs ++ ++# Fix the shell variable \$srcfile for the compiler. ++fix_srcfile_path=$lt_fix_srcfile_path ++ ++# Set to "yes" if exported symbols are required. ++always_export_symbols=$always_export_symbols ++ ++# The commands to list exported symbols. ++export_symbols_cmds=$lt_export_symbols_cmds ++ ++# Symbols that should not be listed in the preloaded symbols. ++exclude_expsyms=$lt_exclude_expsyms ++ ++# Symbols that must always be exported. ++include_expsyms=$lt_include_expsyms ++ ++# Commands necessary for linking programs (against libraries) with templates. ++prelink_cmds=$lt_prelink_cmds ++ ++# Specify filename containing input files. ++file_list_spec=$lt_file_list_spec ++ ++# How to hardcode a shared library path into an executable. ++hardcode_action=$hardcode_action ++ ++# ### END LIBTOOL CONFIG ++ ++_LT_EOF ++ ++ case $host_os in ++ aix3*) ++ cat <<\_LT_EOF >> "$cfgfile" ++# AIX sometimes has problems with the GCC collect2 program. For some ++# reason, if we set the COLLECT_NAMES environment variable, the problems ++# vanish in a puff of smoke. ++if test "X${COLLECT_NAMES+set}" != Xset; then ++ COLLECT_NAMES= ++ export COLLECT_NAMES ++fi ++_LT_EOF ++ ;; ++ esac ++ ++ ++ltmain="$ac_aux_dir/ltmain.sh" ++ ++ ++ # We use sed instead of cat because bash on DJGPP gets confused if ++ # if finds mixed CR/LF and LF-only lines. Since sed operates in ++ # text mode, it properly converts lines to CR/LF. This bash problem ++ # is reportedly fixed, but why not run on old versions too? ++ sed '/^# Generated shell functions inserted here/q' "$ltmain" >> "$cfgfile" \ ++ || (rm -f "$cfgfile"; exit 1) ++ ++ case $xsi_shell in ++ yes) ++ cat << \_LT_EOF >> "$cfgfile" ++ ++# func_dirname file append nondir_replacement ++# Compute the dirname of FILE. If nonempty, add APPEND to the result, ++# otherwise set result to NONDIR_REPLACEMENT. ++func_dirname () ++{ ++ case ${1} in ++ */*) func_dirname_result="${1%/*}${2}" ;; ++ * ) func_dirname_result="${3}" ;; ++ esac ++} ++ ++# func_basename file ++func_basename () ++{ ++ func_basename_result="${1##*/}" ++} ++ ++# func_dirname_and_basename file append nondir_replacement ++# perform func_basename and func_dirname in a single function ++# call: ++# dirname: Compute the dirname of FILE. If nonempty, ++# add APPEND to the result, otherwise set result ++# to NONDIR_REPLACEMENT. ++# value returned in "$func_dirname_result" ++# basename: Compute filename of FILE. ++# value retuned in "$func_basename_result" ++# Implementation must be kept synchronized with func_dirname ++# and func_basename. For efficiency, we do not delegate to ++# those functions but instead duplicate the functionality here. ++func_dirname_and_basename () ++{ ++ case ${1} in ++ */*) func_dirname_result="${1%/*}${2}" ;; ++ * ) func_dirname_result="${3}" ;; ++ esac ++ func_basename_result="${1##*/}" ++} ++ ++# func_stripname prefix suffix name ++# strip PREFIX and SUFFIX off of NAME. ++# PREFIX and SUFFIX must not contain globbing or regex special ++# characters, hashes, percent signs, but SUFFIX may contain a leading ++# dot (in which case that matches only a dot). ++func_stripname () ++{ ++ # pdksh 5.2.14 does not do ${X%$Y} correctly if both X and Y are ++ # positional parameters, so assign one to ordinary parameter first. ++ func_stripname_result=${3} ++ func_stripname_result=${func_stripname_result#"${1}"} ++ func_stripname_result=${func_stripname_result%"${2}"} ++} ++ ++# func_opt_split ++func_opt_split () ++{ ++ func_opt_split_opt=${1%%=*} ++ func_opt_split_arg=${1#*=} ++} ++ ++# func_lo2o object ++func_lo2o () ++{ ++ case ${1} in ++ *.lo) func_lo2o_result=${1%.lo}.${objext} ;; ++ *) func_lo2o_result=${1} ;; ++ esac ++} ++ ++# func_xform libobj-or-source ++func_xform () ++{ ++ func_xform_result=${1%.*}.lo ++} ++ ++# func_arith arithmetic-term... ++func_arith () ++{ ++ func_arith_result=$(( $* )) ++} ++ ++# func_len string ++# STRING may not start with a hyphen. ++func_len () ++{ ++ func_len_result=${#1} ++} ++ ++_LT_EOF ++ ;; ++ *) # Bourne compatible functions. ++ cat << \_LT_EOF >> "$cfgfile" ++ ++# func_dirname file append nondir_replacement ++# Compute the dirname of FILE. If nonempty, add APPEND to the result, ++# otherwise set result to NONDIR_REPLACEMENT. ++func_dirname () ++{ ++ # Extract subdirectory from the argument. ++ func_dirname_result=`$ECHO "X${1}" | $Xsed -e "$dirname"` ++ if test "X$func_dirname_result" = "X${1}"; then ++ func_dirname_result="${3}" ++ else ++ func_dirname_result="$func_dirname_result${2}" ++ fi ++} ++ ++# func_basename file ++func_basename () ++{ ++ func_basename_result=`$ECHO "X${1}" | $Xsed -e "$basename"` ++} ++ ++ ++# func_stripname prefix suffix name ++# strip PREFIX and SUFFIX off of NAME. ++# PREFIX and SUFFIX must not contain globbing or regex special ++# characters, hashes, percent signs, but SUFFIX may contain a leading ++# dot (in which case that matches only a dot). ++# func_strip_suffix prefix name ++func_stripname () ++{ ++ case ${2} in ++ .*) func_stripname_result=`$ECHO "X${3}" \ ++ | $Xsed -e "s%^${1}%%" -e "s%\\\\${2}\$%%"`;; ++ *) func_stripname_result=`$ECHO "X${3}" \ ++ | $Xsed -e "s%^${1}%%" -e "s%${2}\$%%"`;; ++ esac ++} ++ ++# sed scripts: ++my_sed_long_opt='1s/^\(-[^=]*\)=.*/\1/;q' ++my_sed_long_arg='1s/^-[^=]*=//' ++ ++# func_opt_split ++func_opt_split () ++{ ++ func_opt_split_opt=`$ECHO "X${1}" | $Xsed -e "$my_sed_long_opt"` ++ func_opt_split_arg=`$ECHO "X${1}" | $Xsed -e "$my_sed_long_arg"` ++} ++ ++# func_lo2o object ++func_lo2o () ++{ ++ func_lo2o_result=`$ECHO "X${1}" | $Xsed -e "$lo2o"` ++} ++ ++# func_xform libobj-or-source ++func_xform () ++{ ++ func_xform_result=`$ECHO "X${1}" | $Xsed -e 's/\.[^.]*$/.lo/'` ++} ++ ++# func_arith arithmetic-term... ++func_arith () ++{ ++ func_arith_result=`expr "$@"` ++} ++ ++# func_len string ++# STRING may not start with a hyphen. ++func_len () ++{ ++ func_len_result=`expr "$1" : ".*" 2>/dev/null || echo $max_cmd_len` ++} ++ ++_LT_EOF ++esac ++ ++case $lt_shell_append in ++ yes) ++ cat << \_LT_EOF >> "$cfgfile" ++ ++# func_append var value ++# Append VALUE to the end of shell variable VAR. ++func_append () ++{ ++ eval "$1+=\$2" ++} ++_LT_EOF ++ ;; ++ *) ++ cat << \_LT_EOF >> "$cfgfile" ++ ++# func_append var value ++# Append VALUE to the end of shell variable VAR. ++func_append () ++{ ++ eval "$1=\$$1\$2" ++} ++ ++_LT_EOF ++ ;; ++ esac ++ ++ ++ sed -n '/^# Generated shell functions inserted here/,$p' "$ltmain" >> "$cfgfile" \ ++ || (rm -f "$cfgfile"; exit 1) ++ ++ mv -f "$cfgfile" "$ofile" || ++ (rm -f "$ofile" && cp "$cfgfile" "$ofile" && rm -f "$cfgfile") ++ chmod +x "$ofile" ++ ++ ;; ++ ++ esac ++done # for ac_tag ++ ++ ++as_fn_exit 0 ++_ACEOF ++ac_clean_files=$ac_clean_files_save ++ ++test $ac_write_fail = 0 || ++ as_fn_error "write failure creating $CONFIG_STATUS" "$LINENO" 5 ++ ++ ++# configure is writing to config.log, and then calls config.status. ++# config.status does its own redirection, appending to config.log. ++# Unfortunately, on DOS this fails, as config.log is still kept open ++# by configure, so config.status won't be able to write to it; its ++# output is simply discarded. So we exec the FD to /dev/null, ++# effectively closing config.log, so it can be properly (re)opened and ++# appended to by config.status. When coming back to configure, we ++# need to make the FD available again. ++if test "$no_create" != yes; then ++ ac_cs_success=: ++ ac_config_status_args= ++ test "$silent" = yes && ++ ac_config_status_args="$ac_config_status_args --quiet" ++ exec 5>/dev/null ++ $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false ++ exec 5>>config.log ++ # Use ||, not &&, to avoid exiting from the if with $? = 1, which ++ # would make configure fail if this is the last instruction. ++ $ac_cs_success || as_fn_exit $? ++fi ++if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5 ++$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;} ++fi ++ +diff -urP EMBOSS-6.3.1.orig/autom4te.cache/requests EMBOSS-6.3.1/autom4te.cache/requests +--- EMBOSS-6.3.1.orig/autom4te.cache/requests 1969-12-31 19:00:00.000000000 -0500 ++++ EMBOSS-6.3.1/autom4te.cache/requests 2010-08-02 17:23:22.949268306 -0400 +@@ -0,0 +1,68 @@ ++# This file was generated. ++# It contains the lists of macros which have been traced. ++# It can be safely removed. ++ ++@request = ( ++ bless( [ ++ '0', ++ 1, ++ [ ++ '/usr/share/autoconf' ++ ], ++ [ ++ '/usr/share/autoconf/autoconf/autoconf.m4f', ++ 'aclocal.m4', ++ 'configure.in' ++ ], ++ { ++ 'AM_PROG_F77_C_O' => 1, ++ '_LT_AC_TAGCONFIG' => 1, ++ 'm4_pattern_forbid' => 1, ++ 'AC_INIT' => 1, ++ '_AM_COND_IF' => 1, ++ 'AC_CANONICAL_TARGET' => 1, ++ 'AC_SUBST' => 1, ++ 'AC_CONFIG_LIBOBJ_DIR' => 1, ++ 'AC_FC_SRCEXT' => 1, ++ 'AC_CANONICAL_HOST' => 1, ++ 'AC_PROG_LIBTOOL' => 1, ++ 'AM_INIT_AUTOMAKE' => 1, ++ 'AC_CONFIG_SUBDIRS' => 1, ++ 'AM_AUTOMAKE_VERSION' => 1, ++ 'LT_CONFIG_LTDL_DIR' => 1, ++ 'AC_REQUIRE_AUX_FILE' => 1, ++ 'AC_CONFIG_LINKS' => 1, ++ 'LT_SUPPORTED_TAG' => 1, ++ 'm4_sinclude' => 1, ++ 'AM_MAINTAINER_MODE' => 1, ++ 'AM_GNU_GETTEXT_INTL_SUBDIR' => 1, ++ '_m4_warn' => 1, ++ 'AM_PROG_CXX_C_O' => 1, ++ '_AM_COND_ENDIF' => 1, ++ 'AM_ENABLE_MULTILIB' => 1, ++ 'AM_SILENT_RULES' => 1, ++ 'AC_CONFIG_FILES' => 1, ++ 'LT_INIT' => 1, ++ 'include' => 1, ++ 'AM_GNU_GETTEXT' => 1, ++ 'AC_LIBSOURCE' => 1, ++ 'AM_PROG_FC_C_O' => 1, ++ 'AC_CANONICAL_BUILD' => 1, ++ 'AC_FC_FREEFORM' => 1, ++ 'AH_OUTPUT' => 1, ++ '_AM_SUBST_NOTMAKE' => 1, ++ 'AC_CONFIG_AUX_DIR' => 1, ++ 'm4_pattern_allow' => 1, ++ 'sinclude' => 1, ++ 'AM_PROG_CC_C_O' => 1, ++ 'AC_CANONICAL_SYSTEM' => 1, ++ 'AM_CONDITIONAL' => 1, ++ 'AC_CONFIG_HEADERS' => 1, ++ 'AC_DEFINE_TRACE_LITERAL' => 1, ++ 'm4_include' => 1, ++ '_AM_COND_ELSE' => 1, ++ 'AC_SUBST_TRACE' => 1 ++ } ++ ], 'Autom4te::Request' ) ++ ); ++ +diff -urP EMBOSS-6.3.1.orig/autom4te.cache/traces.0 EMBOSS-6.3.1/autom4te.cache/traces.0 +--- EMBOSS-6.3.1.orig/autom4te.cache/traces.0 1969-12-31 19:00:00.000000000 -0500 ++++ EMBOSS-6.3.1/autom4te.cache/traces.0 2010-08-02 17:23:22.873143149 -0400 +@@ -0,0 +1,1017 @@ ++m4trace:aclocal.m4:8901: -1- m4_include([m4/amd64.m4]) ++m4trace:aclocal.m4:8902: -1- m4_include([m4/general.m4]) ++m4trace:aclocal.m4:8903: -1- m4_include([m4/hpdf.m4]) ++m4trace:aclocal.m4:8904: -1- m4_include([m4/java.m4]) ++m4trace:aclocal.m4:8905: -1- m4_include([m4/lf_x11.m4]) ++m4trace:aclocal.m4:8906: -1- m4_include([m4/mysql.m4]) ++m4trace:aclocal.m4:8907: -1- m4_include([m4/plplot.m4]) ++m4trace:aclocal.m4:8908: -1- m4_include([m4/pngdriver.m4]) ++m4trace:aclocal.m4:8909: -1- m4_include([m4/postgresql.m4]) ++m4trace:aclocal.m4:8910: -1- m4_include([m4/sgi.m4]) ++m4trace:configure.in:8: -1- AC_INIT([ajax/core/ajmath.c]) ++m4trace:configure.in:8: -1- m4_pattern_forbid([^_?A[CHUM]_]) ++m4trace:configure.in:8: -1- m4_pattern_forbid([_AC_]) ++m4trace:configure.in:8: -1- m4_pattern_forbid([^LIBOBJS$], [do not use LIBOBJS directly, use AC_LIBOBJ (see section `AC_LIBOBJ vs LIBOBJS']) ++m4trace:configure.in:8: -1- m4_pattern_allow([^AS_FLAGS$]) ++m4trace:configure.in:8: -1- m4_pattern_forbid([^_?m4_]) 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++@%:@undef HAVE_SYS_DIR_H]) ++m4trace:configure.in:227: -1- AH_OUTPUT([HAVE_NDIR_H], [/* Define to 1 if you have the header file, and it defines `DIR\'. */ ++@%:@undef HAVE_NDIR_H]) ++m4trace:configure.in:228: -1- AC_DEFINE_TRACE_LITERAL([STDC_HEADERS]) ++m4trace:configure.in:228: -1- m4_pattern_allow([^STDC_HEADERS$]) ++m4trace:configure.in:228: -1- AH_OUTPUT([STDC_HEADERS], [/* Define to 1 if you have the ANSI C header files. */ ++@%:@undef STDC_HEADERS]) ++m4trace:configure.in:230: -1- AH_OUTPUT([HAVE_UNISTD_H], [/* Define to 1 if you have the header file. */ ++@%:@undef HAVE_UNISTD_H]) ++m4trace:configure.in:230: -1- AH_OUTPUT([HAVE_TARGETCONFIG_H], [/* Define to 1 if you have the header file. */ ++@%:@undef HAVE_TARGETCONFIG_H]) ++m4trace:configure.in:238: -1- AC_DEFINE_TRACE_LITERAL([const]) ++m4trace:configure.in:238: -1- m4_pattern_allow([^const$]) ++m4trace:configure.in:238: -1- AH_OUTPUT([const], [/* Define to empty if `const\' does not conform to ANSI C. */ ++@%:@undef const]) ++m4trace:configure.in:243: -1- AC_DEFINE_TRACE_LITERAL([pid_t]) ++m4trace:configure.in:243: -1- m4_pattern_allow([^pid_t$]) ++m4trace:configure.in:243: -1- AH_OUTPUT([pid_t], [/* Define to `int\' if does not define. */ ++@%:@undef pid_t]) ++m4trace:configure.in:244: -1- AC_DEFINE_TRACE_LITERAL([size_t]) ++m4trace:configure.in:244: -1- m4_pattern_allow([^size_t$]) ++m4trace:configure.in:244: -1- AH_OUTPUT([size_t], [/* Define to `unsigned int\' if does not define. */ ++@%:@undef size_t]) ++m4trace:configure.in:247: -1- AC_DEFINE_TRACE_LITERAL([TM_IN_SYS_TIME]) ++m4trace:configure.in:247: -1- m4_pattern_allow([^TM_IN_SYS_TIME$]) ++m4trace:configure.in:247: -1- AH_OUTPUT([TM_IN_SYS_TIME], [/* Define to 1 if your declares `struct tm\'. */ ++@%:@undef TM_IN_SYS_TIME]) ++m4trace:configure.in:255: -1- AC_DEFINE_TRACE_LITERAL([GETPGRP_VOID]) ++m4trace:configure.in:255: -1- m4_pattern_allow([^GETPGRP_VOID$]) ++m4trace:configure.in:255: -1- AH_OUTPUT([GETPGRP_VOID], [/* Define to 1 if the `getpgrp\' function requires zero arguments. */ ++@%:@undef GETPGRP_VOID]) ++m4trace:configure.in:256: -1- AH_OUTPUT([HAVE_STRFTIME], [/* Define to 1 if you have the `strftime\' function. */ ++@%:@undef HAVE_STRFTIME]) ++m4trace:configure.in:256: -1- AC_DEFINE_TRACE_LITERAL([HAVE_STRFTIME]) ++m4trace:configure.in:256: -1- m4_pattern_allow([^HAVE_STRFTIME$]) ++m4trace:configure.in:256: -1- AC_DEFINE_TRACE_LITERAL([HAVE_STRFTIME]) ++m4trace:configure.in:256: -1- m4_pattern_allow([^HAVE_STRFTIME$]) ++m4trace:configure.in:257: -1- _m4_warn([obsolete], [The macro `AC_FUNC_VFORK' is obsolete. ++You should run autoupdate.], [../../lib/autoconf/functions.m4:1926: AC_FUNC_VFORK is expanded from... ++configure.in:257: the top level]) ++m4trace:configure.in:257: -1- AH_OUTPUT([HAVE_VFORK_H], [/* Define to 1 if you have the header file. */ ++@%:@undef HAVE_VFORK_H]) ++m4trace:configure.in:257: -1- AC_DEFINE_TRACE_LITERAL([HAVE_VFORK_H]) ++m4trace:configure.in:257: -1- m4_pattern_allow([^HAVE_VFORK_H$]) ++m4trace:configure.in:257: -1- AH_OUTPUT([HAVE_FORK], [/* Define to 1 if you have the `fork\' function. */ ++@%:@undef HAVE_FORK]) ++m4trace:configure.in:257: -1- AH_OUTPUT([HAVE_VFORK], [/* Define to 1 if you have the `vfork\' function. */ ++@%:@undef HAVE_VFORK]) ++m4trace:configure.in:257: -1- AC_DEFINE_TRACE_LITERAL([HAVE_WORKING_VFORK]) ++m4trace:configure.in:257: -1- m4_pattern_allow([^HAVE_WORKING_VFORK$]) ++m4trace:configure.in:257: -1- AH_OUTPUT([HAVE_WORKING_VFORK], [/* Define to 1 if `vfork\' works. */ ++@%:@undef HAVE_WORKING_VFORK]) ++m4trace:configure.in:257: -1- AC_DEFINE_TRACE_LITERAL([vfork]) ++m4trace:configure.in:257: -1- m4_pattern_allow([^vfork$]) ++m4trace:configure.in:257: -1- AH_OUTPUT([vfork], [/* Define as `fork\' if `vfork\' does not work. */ ++@%:@undef vfork]) ++m4trace:configure.in:257: -1- AC_DEFINE_TRACE_LITERAL([HAVE_WORKING_FORK]) ++m4trace:configure.in:257: -1- m4_pattern_allow([^HAVE_WORKING_FORK$]) ++m4trace:configure.in:257: -1- AH_OUTPUT([HAVE_WORKING_FORK], [/* Define to 1 if `fork\' works. */ ++@%:@undef HAVE_WORKING_FORK]) ++m4trace:configure.in:258: -1- AH_OUTPUT([HAVE_VPRINTF], [/* Define to 1 if you have the `vprintf\' function. */ ++@%:@undef HAVE_VPRINTF]) ++m4trace:configure.in:258: -1- AC_DEFINE_TRACE_LITERAL([HAVE_VPRINTF]) ++m4trace:configure.in:258: -1- m4_pattern_allow([^HAVE_VPRINTF$]) ++m4trace:configure.in:258: -1- AC_DEFINE_TRACE_LITERAL([HAVE_DOPRNT]) ++m4trace:configure.in:258: -1- m4_pattern_allow([^HAVE_DOPRNT$]) ++m4trace:configure.in:258: -1- AH_OUTPUT([HAVE_DOPRNT], [/* Define to 1 if you don\'t have `vprintf\' but do have `_doprnt.\' */ ++@%:@undef HAVE_DOPRNT]) ++m4trace:configure.in:264: -1- AH_OUTPUT([HAVE_MEMMOVE], [/* Define to 1 if you have the `memmove\' function. */ ++@%:@undef HAVE_MEMMOVE]) ++m4trace:configure.in:264: -1- AC_DEFINE_TRACE_LITERAL([HAVE_MEMMOVE]) ++m4trace:configure.in:264: -1- m4_pattern_allow([^HAVE_MEMMOVE$]) ++m4trace:configure.in:272: -1- AC_SUBST([XLIB]) ++m4trace:configure.in:272: -1- AC_SUBST_TRACE([XLIB]) ++m4trace:configure.in:272: -1- m4_pattern_allow([^XLIB$]) ++m4trace:configure.in:272: -1- AC_DEFINE_TRACE_LITERAL([PLD_xwin]) ++m4trace:configure.in:272: -1- m4_pattern_allow([^PLD_xwin$]) ++m4trace:configure.in:277: -1- AH_OUTPUT([HAVE_LIBM], [/* Define to 1 if you have the `m\' library (-lm). */ ++@%:@undef HAVE_LIBM]) ++m4trace:configure.in:277: -1- AC_DEFINE_TRACE_LITERAL([HAVE_LIBM]) ++m4trace:configure.in:277: -1- m4_pattern_allow([^HAVE_LIBM$]) ++m4trace:configure.in:284: -1- AM_CONDITIONAL([AMPNG], [false]) ++m4trace:configure.in:284: -1- AC_SUBST([AMPNG_TRUE]) ++m4trace:configure.in:284: -1- AC_SUBST_TRACE([AMPNG_TRUE]) ++m4trace:configure.in:284: -1- m4_pattern_allow([^AMPNG_TRUE$]) ++m4trace:configure.in:284: -1- AC_SUBST([AMPNG_FALSE]) ++m4trace:configure.in:284: -1- AC_SUBST_TRACE([AMPNG_FALSE]) ++m4trace:configure.in:284: -1- m4_pattern_allow([^AMPNG_FALSE$]) ++m4trace:configure.in:284: -1- _AM_SUBST_NOTMAKE([AMPNG_TRUE]) ++m4trace:configure.in:284: -1- _AM_SUBST_NOTMAKE([AMPNG_FALSE]) ++m4trace:configure.in:285: -1- AM_CONDITIONAL([AMPDF], [false]) ++m4trace:configure.in:285: -1- AC_SUBST([AMPDF_TRUE]) ++m4trace:configure.in:285: -1- AC_SUBST_TRACE([AMPDF_TRUE]) ++m4trace:configure.in:285: -1- m4_pattern_allow([^AMPDF_TRUE$]) ++m4trace:configure.in:285: -1- AC_SUBST([AMPDF_FALSE]) ++m4trace:configure.in:285: -1- AC_SUBST_TRACE([AMPDF_FALSE]) ++m4trace:configure.in:285: -1- m4_pattern_allow([^AMPDF_FALSE$]) ++m4trace:configure.in:285: -1- _AM_SUBST_NOTMAKE([AMPDF_TRUE]) ++m4trace:configure.in:285: -1- _AM_SUBST_NOTMAKE([AMPDF_FALSE]) ++m4trace:configure.in:288: -1- AC_SUBST([havejavac]) ++m4trace:configure.in:288: -1- AC_SUBST_TRACE([havejavac]) ++m4trace:configure.in:288: -1- m4_pattern_allow([^havejavac$]) ++m4trace:configure.in:288: -1- AC_SUBST([JAVA_OK]) ++m4trace:configure.in:288: -1- AC_SUBST_TRACE([JAVA_OK]) ++m4trace:configure.in:288: -1- m4_pattern_allow([^JAVA_OK$]) ++m4trace:configure.in:288: -1- AC_SUBST([JAVA_OK]) ++m4trace:configure.in:288: -1- AC_SUBST_TRACE([JAVA_OK]) ++m4trace:configure.in:288: -1- m4_pattern_allow([^JAVA_OK$]) ++m4trace:configure.in:290: -1- AC_DEFINE_TRACE_LITERAL([PLD_pdf]) ++m4trace:configure.in:290: -1- m4_pattern_allow([^PLD_pdf$]) ++m4trace:configure.in:290: -1- AM_CONDITIONAL([AMPDF], [true]) ++m4trace:configure.in:290: -1- AC_SUBST([AMPDF_TRUE]) ++m4trace:configure.in:290: -1- AC_SUBST_TRACE([AMPDF_TRUE]) ++m4trace:configure.in:290: -1- m4_pattern_allow([^AMPDF_TRUE$]) ++m4trace:configure.in:290: -1- AC_SUBST([AMPDF_FALSE]) ++m4trace:configure.in:290: -1- AC_SUBST_TRACE([AMPDF_FALSE]) ++m4trace:configure.in:290: -1- m4_pattern_allow([^AMPDF_FALSE$]) ++m4trace:configure.in:290: -1- _AM_SUBST_NOTMAKE([AMPDF_TRUE]) ++m4trace:configure.in:290: -1- _AM_SUBST_NOTMAKE([AMPDF_FALSE]) ++m4trace:configure.in:290: -1- AM_CONDITIONAL([AMPDF], [false]) ++m4trace:configure.in:290: -1- AC_SUBST([AMPDF_TRUE]) ++m4trace:configure.in:290: -1- AC_SUBST_TRACE([AMPDF_TRUE]) ++m4trace:configure.in:290: -1- m4_pattern_allow([^AMPDF_TRUE$]) ++m4trace:configure.in:290: -1- AC_SUBST([AMPDF_FALSE]) ++m4trace:configure.in:290: -1- AC_SUBST_TRACE([AMPDF_FALSE]) ++m4trace:configure.in:290: -1- m4_pattern_allow([^AMPDF_FALSE$]) ++m4trace:configure.in:290: -1- _AM_SUBST_NOTMAKE([AMPDF_TRUE]) ++m4trace:configure.in:290: -1- _AM_SUBST_NOTMAKE([AMPDF_FALSE]) ++m4trace:configure.in:291: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^PLPLOT_H$]) ++m4trace:configure.in:291: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */ ++@%:@undef PLPLOT_H]) ++m4trace:configure.in:291: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^PLPLOTP_H$]) ++m4trace:configure.in:291: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */ ++@%:@undef PLPLOTP_H]) ++m4trace:configure.in:291: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^PLPLOT_H$]) ++m4trace:configure.in:291: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */ ++@%:@undef PLPLOT_H]) ++m4trace:configure.in:291: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^PLPLOTP_H$]) ++m4trace:configure.in:291: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */ ++@%:@undef PLPLOTP_H]) ++m4trace:configure.in:291: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^PLPLOT_H$]) ++m4trace:configure.in:291: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */ ++@%:@undef PLPLOT_H]) ++m4trace:configure.in:291: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^PLPLOTP_H$]) ++m4trace:configure.in:291: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */ ++@%:@undef PLPLOTP_H]) ++m4trace:configure.in:291: -1- AC_DEFINE_TRACE_LITERAL([PLPLOT_H]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^PLPLOT_H$]) ++m4trace:configure.in:291: -1- AH_OUTPUT([PLPLOT_H], [/* PLPlot header filename. */ ++@%:@undef PLPLOT_H]) ++m4trace:configure.in:291: -1- AC_DEFINE_TRACE_LITERAL([PLPLOTP_H]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^PLPLOTP_H$]) ++m4trace:configure.in:291: -1- AH_OUTPUT([PLPLOTP_H], [/* PLPlot private header filename. */ ++@%:@undef PLPLOTP_H]) ++m4trace:configure.in:291: -1- AH_OUTPUT([HAVE_LIBPLPLOTD], [/* Define to 1 if you have the `plplotd\' library (-lplplotd). */ ++@%:@undef HAVE_LIBPLPLOTD]) ++m4trace:configure.in:291: -1- AC_DEFINE_TRACE_LITERAL([HAVE_LIBPLPLOTD]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^HAVE_LIBPLPLOTD$]) ++m4trace:configure.in:291: -1- AH_OUTPUT([HAVE_LIBPLPLOTD], [/* Define to 1 if you have the `plplotd\' library (-lplplotd). */ ++@%:@undef HAVE_LIBPLPLOTD]) ++m4trace:configure.in:291: -1- AC_DEFINE_TRACE_LITERAL([HAVE_LIBPLPLOTD]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^HAVE_LIBPLPLOTD$]) ++m4trace:configure.in:291: -1- AC_SUBST([PLPLOT_CFLAGS]) ++m4trace:configure.in:291: -1- AC_SUBST_TRACE([PLPLOT_CFLAGS]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^PLPLOT_CFLAGS$]) ++m4trace:configure.in:291: -1- AC_SUBST([PLPLOT_LIBS]) ++m4trace:configure.in:291: -1- AC_SUBST_TRACE([PLPLOT_LIBS]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^PLPLOT_LIBS$]) ++m4trace:configure.in:291: -1- AC_DEFINE_TRACE_LITERAL([HAVE_PLPLOT]) ++m4trace:configure.in:291: -1- m4_pattern_allow([^HAVE_PLPLOT$]) ++m4trace:configure.in:291: -1- AH_OUTPUT([HAVE_PLPLOT], [/* Define if you have the PLPlot libraries and header files. */ ++@%:@undef HAVE_PLPLOT]) ++m4trace:configure.in:292: -1- AC_DEFINE_TRACE_LITERAL([PLD_png]) ++m4trace:configure.in:292: -1- m4_pattern_allow([^PLD_png$]) ++m4trace:configure.in:292: -1- AM_CONDITIONAL([AMPNG], [true]) ++m4trace:configure.in:292: -1- AC_SUBST([AMPNG_TRUE]) ++m4trace:configure.in:292: -1- AC_SUBST_TRACE([AMPNG_TRUE]) ++m4trace:configure.in:292: -1- m4_pattern_allow([^AMPNG_TRUE$]) ++m4trace:configure.in:292: -1- AC_SUBST([AMPNG_FALSE]) ++m4trace:configure.in:292: -1- AC_SUBST_TRACE([AMPNG_FALSE]) ++m4trace:configure.in:292: -1- m4_pattern_allow([^AMPNG_FALSE$]) ++m4trace:configure.in:292: -1- _AM_SUBST_NOTMAKE([AMPNG_TRUE]) ++m4trace:configure.in:292: -1- _AM_SUBST_NOTMAKE([AMPNG_FALSE]) ++m4trace:configure.in:292: -1- AM_CONDITIONAL([AMPNG], [false]) ++m4trace:configure.in:292: -1- AC_SUBST([AMPNG_TRUE]) ++m4trace:configure.in:292: -1- AC_SUBST_TRACE([AMPNG_TRUE]) ++m4trace:configure.in:292: -1- m4_pattern_allow([^AMPNG_TRUE$]) ++m4trace:configure.in:292: -1- AC_SUBST([AMPNG_FALSE]) ++m4trace:configure.in:292: -1- AC_SUBST_TRACE([AMPNG_FALSE]) ++m4trace:configure.in:292: -1- m4_pattern_allow([^AMPNG_FALSE$]) ++m4trace:configure.in:292: -1- _AM_SUBST_NOTMAKE([AMPNG_TRUE]) ++m4trace:configure.in:292: -1- _AM_SUBST_NOTMAKE([AMPNG_FALSE]) ++m4trace:configure.in:296: -1- AC_SUBST([MYSQL_CONFIG]) ++m4trace:configure.in:296: -1- AC_SUBST_TRACE([MYSQL_CONFIG]) ++m4trace:configure.in:296: -1- m4_pattern_allow([^MYSQL_CONFIG$]) ++m4trace:configure.in:296: -1- AC_DEFINE_TRACE_LITERAL([HAVE_MYSQL]) ++m4trace:configure.in:296: -1- m4_pattern_allow([^HAVE_MYSQL$]) ++m4trace:configure.in:296: -1- AH_OUTPUT([HAVE_MYSQL], [/* Define to 1 if MySQL libraries are available */ ++@%:@undef HAVE_MYSQL]) ++m4trace:configure.in:296: -1- AC_SUBST([MYSQL_VERSION]) ++m4trace:configure.in:296: -1- AC_SUBST_TRACE([MYSQL_VERSION]) ++m4trace:configure.in:296: -1- m4_pattern_allow([^MYSQL_VERSION$]) ++m4trace:configure.in:296: -1- AC_SUBST([MYSQL_CFLAGS]) ++m4trace:configure.in:296: -1- AC_SUBST_TRACE([MYSQL_CFLAGS]) ++m4trace:configure.in:296: -1- m4_pattern_allow([^MYSQL_CFLAGS$]) ++m4trace:configure.in:296: -1- AC_SUBST([MYSQL_LDFLAGS]) ++m4trace:configure.in:296: -1- AC_SUBST_TRACE([MYSQL_LDFLAGS]) ++m4trace:configure.in:296: -1- m4_pattern_allow([^MYSQL_LDFLAGS$]) ++m4trace:configure.in:297: -1- AC_SUBST([PG_CONFIG]) ++m4trace:configure.in:297: -1- AC_SUBST_TRACE([PG_CONFIG]) ++m4trace:configure.in:297: -1- m4_pattern_allow([^PG_CONFIG$]) ++m4trace:configure.in:297: -1- AC_DEFINE_TRACE_LITERAL([HAVE_POSTGRESQL]) ++m4trace:configure.in:297: -1- m4_pattern_allow([^HAVE_POSTGRESQL$]) ++m4trace:configure.in:297: -1- AH_OUTPUT([HAVE_POSTGRESQL], [/* Define to 1 if PostgreSQL libraries are available */ ++@%:@undef HAVE_POSTGRESQL]) ++m4trace:configure.in:297: -1- AC_SUBST([POSTGRESQL_VERSION]) ++m4trace:configure.in:297: -1- AC_SUBST_TRACE([POSTGRESQL_VERSION]) ++m4trace:configure.in:297: -1- m4_pattern_allow([^POSTGRESQL_VERSION$]) ++m4trace:configure.in:297: -1- AC_SUBST([POSTGRESQL_CFLAGS]) ++m4trace:configure.in:297: -1- AC_SUBST_TRACE([POSTGRESQL_CFLAGS]) ++m4trace:configure.in:297: -1- m4_pattern_allow([^POSTGRESQL_CFLAGS$]) ++m4trace:configure.in:297: -1- AC_SUBST([POSTGRESQL_LDFLAGS]) ++m4trace:configure.in:297: -1- AC_SUBST_TRACE([POSTGRESQL_LDFLAGS]) ++m4trace:configure.in:297: -1- m4_pattern_allow([^POSTGRESQL_LDFLAGS$]) ++m4trace:configure.in:308: -1- AC_SUBST([javac_in_path]) ++m4trace:configure.in:308: -1- AC_SUBST_TRACE([javac_in_path]) ++m4trace:configure.in:308: -1- m4_pattern_allow([^javac_in_path$]) ++m4trace:configure.in:309: -1- AC_SUBST([ant_in_path]) ++m4trace:configure.in:309: -1- AC_SUBST_TRACE([ant_in_path]) ++m4trace:configure.in:309: -1- m4_pattern_allow([^ant_in_path$]) ++m4trace:configure.in:310: -1- AM_CONDITIONAL([EHAVEANT], [test "$ant_in_path" = "true" && "$javac_in_path" = "true"]) ++m4trace:configure.in:310: -1- AC_SUBST([EHAVEANT_TRUE]) ++m4trace:configure.in:310: -1- AC_SUBST_TRACE([EHAVEANT_TRUE]) ++m4trace:configure.in:310: -1- m4_pattern_allow([^EHAVEANT_TRUE$]) ++m4trace:configure.in:310: -1- AC_SUBST([EHAVEANT_FALSE]) ++m4trace:configure.in:310: -1- AC_SUBST_TRACE([EHAVEANT_FALSE]) ++m4trace:configure.in:310: -1- m4_pattern_allow([^EHAVEANT_FALSE$]) ++m4trace:configure.in:310: -1- _AM_SUBST_NOTMAKE([EHAVEANT_TRUE]) ++m4trace:configure.in:310: -1- _AM_SUBST_NOTMAKE([EHAVEANT_FALSE]) ++m4trace:configure.in:311: -1- AC_SUBST([EHAVEANT]) ++m4trace:configure.in:311: -1- AC_SUBST_TRACE([EHAVEANT]) ++m4trace:configure.in:311: -1- m4_pattern_allow([^EHAVEANT$]) ++m4trace:configure.in:315: -1- AC_SUBST([HAVE_MEMMOVE]) ++m4trace:configure.in:315: -1- AC_SUBST_TRACE([HAVE_MEMMOVE]) ++m4trace:configure.in:315: -1- m4_pattern_allow([^HAVE_MEMMOVE$]) ++m4trace:configure.in:316: -1- AC_SUBST([HAVE_STRERROR]) ++m4trace:configure.in:316: -1- AC_SUBST_TRACE([HAVE_STRERROR]) ++m4trace:configure.in:316: -1- m4_pattern_allow([^HAVE_STRERROR$]) ++m4trace:configure.in:317: -1- AC_SUBST([PCRE_MAJOR]) ++m4trace:configure.in:317: -1- AC_SUBST_TRACE([PCRE_MAJOR]) ++m4trace:configure.in:317: -1- m4_pattern_allow([^PCRE_MAJOR$]) ++m4trace:configure.in:318: -1- AC_SUBST([PCRE_MINOR]) ++m4trace:configure.in:318: -1- AC_SUBST_TRACE([PCRE_MINOR]) ++m4trace:configure.in:318: -1- m4_pattern_allow([^PCRE_MINOR$]) ++m4trace:configure.in:319: -1- AC_SUBST([PCRE_DATE]) ++m4trace:configure.in:319: -1- AC_SUBST_TRACE([PCRE_DATE]) ++m4trace:configure.in:319: -1- m4_pattern_allow([^PCRE_DATE$]) ++m4trace:configure.in:320: -1- AC_SUBST([PCRE_VERSION]) ++m4trace:configure.in:320: -1- AC_SUBST_TRACE([PCRE_VERSION]) ++m4trace:configure.in:320: -1- m4_pattern_allow([^PCRE_VERSION$]) ++m4trace:configure.in:321: -1- AC_SUBST([PCRE_LIB_VERSION]) ++m4trace:configure.in:321: -1- AC_SUBST_TRACE([PCRE_LIB_VERSION]) ++m4trace:configure.in:321: -1- m4_pattern_allow([^PCRE_LIB_VERSION$]) ++m4trace:configure.in:322: -1- AC_SUBST([PCRE_POSIXLIB_VERSION]) ++m4trace:configure.in:322: -1- AC_SUBST_TRACE([PCRE_POSIXLIB_VERSION]) ++m4trace:configure.in:322: -1- m4_pattern_allow([^PCRE_POSIXLIB_VERSION$]) ++m4trace:configure.in:323: -1- AC_SUBST([POSIX_MALLOC_THRESHOLD]) ++m4trace:configure.in:323: -1- AC_SUBST_TRACE([POSIX_MALLOC_THRESHOLD]) ++m4trace:configure.in:323: -1- m4_pattern_allow([^POSIX_MALLOC_THRESHOLD$]) ++m4trace:configure.in:427: -1- AH_OUTPUT([HAVE_LIBPCRE], [/* Define to 1 if you have the `pcre\' library (-lpcre). */ ++@%:@undef HAVE_LIBPCRE]) ++m4trace:configure.in:427: -1- AC_DEFINE_TRACE_LITERAL([HAVE_LIBPCRE]) ++m4trace:configure.in:427: -1- m4_pattern_allow([^HAVE_LIBPCRE$]) ++m4trace:configure.in:428: -1- AH_OUTPUT([HAVE_LIBEXPAT], [/* Define to 1 if you have the `expat\' library (-lexpat). */ ++@%:@undef HAVE_LIBEXPAT]) ++m4trace:configure.in:428: -1- AC_DEFINE_TRACE_LITERAL([HAVE_LIBEXPAT]) ++m4trace:configure.in:428: -1- m4_pattern_allow([^HAVE_LIBEXPAT$]) ++m4trace:configure.in:430: -1- AM_CONDITIONAL([ESYSTEMLIBS], [test "$have_systemlibs" = "yes"]) ++m4trace:configure.in:430: -1- AC_SUBST([ESYSTEMLIBS_TRUE]) ++m4trace:configure.in:430: -1- AC_SUBST_TRACE([ESYSTEMLIBS_TRUE]) ++m4trace:configure.in:430: -1- m4_pattern_allow([^ESYSTEMLIBS_TRUE$]) ++m4trace:configure.in:430: -1- AC_SUBST([ESYSTEMLIBS_FALSE]) ++m4trace:configure.in:430: -1- AC_SUBST_TRACE([ESYSTEMLIBS_FALSE]) ++m4trace:configure.in:430: -1- m4_pattern_allow([^ESYSTEMLIBS_FALSE$]) ++m4trace:configure.in:430: -1- _AM_SUBST_NOTMAKE([ESYSTEMLIBS_TRUE]) ++m4trace:configure.in:430: -1- _AM_SUBST_NOTMAKE([ESYSTEMLIBS_FALSE]) ++m4trace:configure.in:431: -1- AC_SUBST([ESYSTEMLIBS]) ++m4trace:configure.in:431: -1- AC_SUBST_TRACE([ESYSTEMLIBS]) ++m4trace:configure.in:431: -1- m4_pattern_allow([^ESYSTEMLIBS$]) ++m4trace:configure.in:466: -1- AC_SUBST([WARN_CFLAGS]) ++m4trace:configure.in:466: -1- AC_SUBST_TRACE([WARN_CFLAGS]) ++m4trace:configure.in:466: -1- m4_pattern_allow([^WARN_CFLAGS$]) ++m4trace:configure.in:476: -1- AM_CONDITIONAL([WARNINGS], [test "$have_warnings" = "yes"]) ++m4trace:configure.in:476: -1- AC_SUBST([WARNINGS_TRUE]) ++m4trace:configure.in:476: -1- AC_SUBST_TRACE([WARNINGS_TRUE]) ++m4trace:configure.in:476: -1- m4_pattern_allow([^WARNINGS_TRUE$]) ++m4trace:configure.in:476: -1- AC_SUBST([WARNINGS_FALSE]) ++m4trace:configure.in:476: -1- AC_SUBST_TRACE([WARNINGS_FALSE]) ++m4trace:configure.in:476: -1- m4_pattern_allow([^WARNINGS_FALSE$]) ++m4trace:configure.in:476: -1- _AM_SUBST_NOTMAKE([WARNINGS_TRUE]) ++m4trace:configure.in:476: -1- _AM_SUBST_NOTMAKE([WARNINGS_FALSE]) ++m4trace:configure.in:477: -1- AC_SUBST([WARNINGS]) ++m4trace:configure.in:477: -1- AC_SUBST_TRACE([WARNINGS]) ++m4trace:configure.in:477: -1- m4_pattern_allow([^WARNINGS$]) ++m4trace:configure.in:486: -1- AM_CONDITIONAL([PURIFY], [test "${enable_purify}" = "yes"]) ++m4trace:configure.in:486: -1- AC_SUBST([PURIFY_TRUE]) ++m4trace:configure.in:486: -1- AC_SUBST_TRACE([PURIFY_TRUE]) ++m4trace:configure.in:486: -1- m4_pattern_allow([^PURIFY_TRUE$]) ++m4trace:configure.in:486: -1- AC_SUBST([PURIFY_FALSE]) ++m4trace:configure.in:486: -1- AC_SUBST_TRACE([PURIFY_FALSE]) ++m4trace:configure.in:486: -1- m4_pattern_allow([^PURIFY_FALSE$]) ++m4trace:configure.in:486: -1- _AM_SUBST_NOTMAKE([PURIFY_TRUE]) ++m4trace:configure.in:486: -1- _AM_SUBST_NOTMAKE([PURIFY_FALSE]) ++m4trace:configure.in:491: -1- AM_CONDITIONAL([ISGCC], [test "$CC" = "gcc"]) ++m4trace:configure.in:491: -1- AC_SUBST([ISGCC_TRUE]) ++m4trace:configure.in:491: -1- AC_SUBST_TRACE([ISGCC_TRUE]) ++m4trace:configure.in:491: -1- m4_pattern_allow([^ISGCC_TRUE$]) ++m4trace:configure.in:491: -1- AC_SUBST([ISGCC_FALSE]) ++m4trace:configure.in:491: -1- AC_SUBST_TRACE([ISGCC_FALSE]) ++m4trace:configure.in:491: -1- m4_pattern_allow([^ISGCC_FALSE$]) ++m4trace:configure.in:491: -1- _AM_SUBST_NOTMAKE([ISGCC_TRUE]) ++m4trace:configure.in:491: -1- _AM_SUBST_NOTMAKE([ISGCC_FALSE]) ++m4trace:configure.in:501: -1- AC_SUBST([DEVWARN_CFLAGS]) ++m4trace:configure.in:501: -1- AC_SUBST_TRACE([DEVWARN_CFLAGS]) ++m4trace:configure.in:501: -1- m4_pattern_allow([^DEVWARN_CFLAGS$]) ++m4trace:configure.in:570: -1- AM_CONDITIONAL([DEVWARNINGS], [test "$have_devwarnings" = "yes"]) ++m4trace:configure.in:570: -1- AC_SUBST([DEVWARNINGS_TRUE]) ++m4trace:configure.in:570: -1- AC_SUBST_TRACE([DEVWARNINGS_TRUE]) ++m4trace:configure.in:570: -1- m4_pattern_allow([^DEVWARNINGS_TRUE$]) ++m4trace:configure.in:570: -1- AC_SUBST([DEVWARNINGS_FALSE]) ++m4trace:configure.in:570: -1- AC_SUBST_TRACE([DEVWARNINGS_FALSE]) ++m4trace:configure.in:570: -1- m4_pattern_allow([^DEVWARNINGS_FALSE$]) ++m4trace:configure.in:570: -1- _AM_SUBST_NOTMAKE([DEVWARNINGS_TRUE]) ++m4trace:configure.in:570: -1- _AM_SUBST_NOTMAKE([DEVWARNINGS_FALSE]) ++m4trace:configure.in:571: -1- AC_SUBST([DEVWARNINGS]) ++m4trace:configure.in:571: -1- AC_SUBST_TRACE([DEVWARNINGS]) ++m4trace:configure.in:571: -1- m4_pattern_allow([^DEVWARNINGS$]) ++m4trace:configure.in:587: -1- AM_CONDITIONAL([ISCYGWIN], [test "$platform_cygwin" = "yes"]) ++m4trace:configure.in:587: -1- AC_SUBST([ISCYGWIN_TRUE]) ++m4trace:configure.in:587: -1- AC_SUBST_TRACE([ISCYGWIN_TRUE]) ++m4trace:configure.in:587: -1- m4_pattern_allow([^ISCYGWIN_TRUE$]) ++m4trace:configure.in:587: -1- AC_SUBST([ISCYGWIN_FALSE]) ++m4trace:configure.in:587: -1- AC_SUBST_TRACE([ISCYGWIN_FALSE]) ++m4trace:configure.in:587: -1- m4_pattern_allow([^ISCYGWIN_FALSE$]) ++m4trace:configure.in:587: -1- _AM_SUBST_NOTMAKE([ISCYGWIN_TRUE]) ++m4trace:configure.in:587: -1- _AM_SUBST_NOTMAKE([ISCYGWIN_FALSE]) ++m4trace:configure.in:588: -1- AC_SUBST([ISCYGWIN]) ++m4trace:configure.in:588: -1- AC_SUBST_TRACE([ISCYGWIN]) ++m4trace:configure.in:588: -1- m4_pattern_allow([^ISCYGWIN$]) ++m4trace:configure.in:595: -1- AM_CONDITIONAL([ISAIXIA64], [test "`uname`" = "AIX"]) ++m4trace:configure.in:595: -1- AC_SUBST([ISAIXIA64_TRUE]) ++m4trace:configure.in:595: -1- AC_SUBST_TRACE([ISAIXIA64_TRUE]) ++m4trace:configure.in:595: -1- m4_pattern_allow([^ISAIXIA64_TRUE$]) ++m4trace:configure.in:595: -1- AC_SUBST([ISAIXIA64_FALSE]) ++m4trace:configure.in:595: -1- AC_SUBST_TRACE([ISAIXIA64_FALSE]) ++m4trace:configure.in:595: -1- m4_pattern_allow([^ISAIXIA64_FALSE$]) ++m4trace:configure.in:595: -1- _AM_SUBST_NOTMAKE([ISAIXIA64_TRUE]) ++m4trace:configure.in:595: -1- _AM_SUBST_NOTMAKE([ISAIXIA64_FALSE]) ++m4trace:configure.in:596: -1- AM_CONDITIONAL([ISSHARED], [test "${enable_shared}" = "yes"]) ++m4trace:configure.in:596: -1- AC_SUBST([ISSHARED_TRUE]) ++m4trace:configure.in:596: -1- AC_SUBST_TRACE([ISSHARED_TRUE]) ++m4trace:configure.in:596: -1- m4_pattern_allow([^ISSHARED_TRUE$]) ++m4trace:configure.in:596: -1- AC_SUBST([ISSHARED_FALSE]) ++m4trace:configure.in:596: -1- AC_SUBST_TRACE([ISSHARED_FALSE]) ++m4trace:configure.in:596: -1- m4_pattern_allow([^ISSHARED_FALSE$]) ++m4trace:configure.in:596: -1- _AM_SUBST_NOTMAKE([ISSHARED_TRUE]) ++m4trace:configure.in:596: -1- _AM_SUBST_NOTMAKE([ISSHARED_FALSE]) ++m4trace:configure.in:597: -1- AC_SUBST([ISAIXIA64]) ++m4trace:configure.in:597: -1- AC_SUBST_TRACE([ISAIXIA64]) ++m4trace:configure.in:597: -1- m4_pattern_allow([^ISAIXIA64$]) ++m4trace:configure.in:616: -1- AM_CONDITIONAL([NEEDAJAX], [test "$needajax" = "yes"]) ++m4trace:configure.in:616: -1- AC_SUBST([NEEDAJAX_TRUE]) ++m4trace:configure.in:616: -1- AC_SUBST_TRACE([NEEDAJAX_TRUE]) ++m4trace:configure.in:616: -1- m4_pattern_allow([^NEEDAJAX_TRUE$]) ++m4trace:configure.in:616: -1- AC_SUBST([NEEDAJAX_FALSE]) ++m4trace:configure.in:616: -1- AC_SUBST_TRACE([NEEDAJAX_FALSE]) ++m4trace:configure.in:616: -1- m4_pattern_allow([^NEEDAJAX_FALSE$]) ++m4trace:configure.in:616: -1- _AM_SUBST_NOTMAKE([NEEDAJAX_TRUE]) ++m4trace:configure.in:616: -1- _AM_SUBST_NOTMAKE([NEEDAJAX_FALSE]) ++m4trace:configure.in:617: -1- AC_SUBST([NEEDAJAX]) ++m4trace:configure.in:617: -1- AC_SUBST_TRACE([NEEDAJAX]) ++m4trace:configure.in:617: -1- m4_pattern_allow([^NEEDAJAX$]) ++m4trace:configure.in:664: -1- AC_CONFIG_FILES([nucleus/Makefile ajax/Makefile ++ajax/core/Makefile ++ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ++ajax/acd/Makefile ++emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile ++test/embl/Makefile test/genbank/Makefile ++test/pir/Makefile test/swiss/Makefile ++test/swnew/Makefile test/testdb/Makefile ++emboss/data/Makefile ++emboss/data/AAINDEX/Makefile ++emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile ++emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile ++emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile ++emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile ++emboss/data/JASPAR_PBM/Makefile emboss/data/JASPAR_PBM_HLH/Makefile ++emboss/data/JASPAR_PBM_HOMEO/Makefile ++emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile ++doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile ++doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile ++jemboss/Makefile ++jemboss/images/Makefile ++jemboss/lib/Makefile jemboss/lib/axis/Makefile ++jemboss/resources/Makefile jemboss/utils/Makefile ++Makefile]) ++m4trace:configure.in:664: -1- _m4_warn([obsolete], [AC_OUTPUT should be used without arguments. ++You should run autoupdate.], []) ++m4trace:configure.in:664: -1- AC_SUBST([LIB@&t@OBJS], [$ac_libobjs]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([LIB@&t@OBJS]) ++m4trace:configure.in:664: -1- m4_pattern_allow([^LIB@&t@OBJS$]) ++m4trace:configure.in:664: -1- AC_SUBST([LTLIBOBJS], [$ac_ltlibobjs]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([LTLIBOBJS]) ++m4trace:configure.in:664: -1- m4_pattern_allow([^LTLIBOBJS$]) ++m4trace:configure.in:664: -1- AM_CONDITIONAL([am__EXEEXT], [test -n "$EXEEXT"]) ++m4trace:configure.in:664: -1- AC_SUBST([am__EXEEXT_TRUE]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([am__EXEEXT_TRUE]) ++m4trace:configure.in:664: -1- m4_pattern_allow([^am__EXEEXT_TRUE$]) ++m4trace:configure.in:664: -1- AC_SUBST([am__EXEEXT_FALSE]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([am__EXEEXT_FALSE]) ++m4trace:configure.in:664: -1- m4_pattern_allow([^am__EXEEXT_FALSE$]) ++m4trace:configure.in:664: -1- _AM_SUBST_NOTMAKE([am__EXEEXT_TRUE]) ++m4trace:configure.in:664: -1- _AM_SUBST_NOTMAKE([am__EXEEXT_FALSE]) ++m4trace:configure.in:664: -1- _m4_warn([obsolete], [AC_C_BIGENDIAN should be used with AC_CONFIG_HEADERS], []) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([top_builddir]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([top_build_prefix]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([srcdir]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([abs_srcdir]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([top_srcdir]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([abs_top_srcdir]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([builddir]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([abs_builddir]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([abs_top_builddir]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([INSTALL]) ++m4trace:configure.in:664: -1- AC_SUBST_TRACE([MKDIR_P]) ++m4trace:configure.in:664: -1- AC_REQUIRE_AUX_FILE([ltmain.sh]) +diff -urP EMBOSS-6.3.1.orig/doc/Makefile.in EMBOSS-6.3.1/doc/Makefile.in +--- EMBOSS-6.3.1.orig/doc/Makefile.in 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/doc/Makefile.in 2010-08-02 17:23:23.593142800 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -167,6 +167,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -253,9 +255,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu doc/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits doc/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu doc/Makefile ++ $(AUTOMAKE) --gnits doc/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/doc/manuals/Makefile.in EMBOSS-6.3.1/doc/manuals/Makefile.in +--- EMBOSS-6.3.1.orig/doc/manuals/Makefile.in 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/doc/manuals/Makefile.in 2010-08-02 17:23:23.661142730 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -241,9 +243,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu doc/manuals/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits doc/manuals/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu doc/manuals/Makefile ++ $(AUTOMAKE) --gnits doc/manuals/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/doc/programs/html/Makefile.in EMBOSS-6.3.1/doc/programs/html/Makefile.in +--- EMBOSS-6.3.1.orig/doc/programs/html/Makefile.in 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/doc/programs/html/Makefile.in 2010-08-02 17:23:23.811143149 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -352,9 +354,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu doc/programs/html/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits doc/programs/html/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu doc/programs/html/Makefile ++ $(AUTOMAKE) --gnits doc/programs/html/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/doc/programs/Makefile.in EMBOSS-6.3.1/doc/programs/Makefile.in +--- EMBOSS-6.3.1.orig/doc/programs/Makefile.in 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/doc/programs/Makefile.in 2010-08-02 17:23:23.730143289 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -167,6 +167,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -253,9 +255,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu doc/programs/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits doc/programs/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu doc/programs/Makefile ++ $(AUTOMAKE) --gnits doc/programs/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/doc/programs/text/Makefile.in EMBOSS-6.3.1/doc/programs/text/Makefile.in +--- EMBOSS-6.3.1.orig/doc/programs/text/Makefile.in 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/doc/programs/text/Makefile.in 2010-08-02 17:23:23.888142800 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -298,9 +300,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu doc/programs/text/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits doc/programs/text/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu doc/programs/text/Makefile ++ $(AUTOMAKE) --gnits doc/programs/text/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/doc/tutorials/Makefile.in EMBOSS-6.3.1/doc/tutorials/Makefile.in +--- EMBOSS-6.3.1.orig/doc/tutorials/Makefile.in 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/doc/tutorials/Makefile.in 2010-08-02 17:23:23.956143149 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -239,9 +241,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu doc/tutorials/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits doc/tutorials/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu doc/tutorials/Makefile ++ $(AUTOMAKE) --gnits doc/tutorials/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/acd/Makefile.in EMBOSS-6.3.1/emboss/acd/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/acd/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/acd/Makefile.in 2010-08-02 17:23:24.995143010 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -152,6 +152,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -308,9 +310,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/acd/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/acd/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/acd/Makefile ++ $(AUTOMAKE) --gnits emboss/acd/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/AAINDEX/Makefile.in EMBOSS-6.3.1/emboss/data/AAINDEX/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/AAINDEX/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/AAINDEX/Makefile.in 2010-08-02 17:23:25.066142730 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/AAINDEX/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/AAINDEX/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/AAINDEX/Makefile ++ $(AUTOMAKE) --gnits emboss/data/AAINDEX/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/CODONS/Makefile.in EMBOSS-6.3.1/emboss/data/CODONS/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/CODONS/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/CODONS/Makefile.in 2010-08-02 17:23:25.144143079 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -296,9 +298,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/CODONS/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/CODONS/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/CODONS/Makefile ++ $(AUTOMAKE) --gnits emboss/data/CODONS/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/JASPAR_CNE/Makefile.in EMBOSS-6.3.1/emboss/data/JASPAR_CNE/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/JASPAR_CNE/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/JASPAR_CNE/Makefile.in 2010-08-02 17:23:25.214143219 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/JASPAR_CNE/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/JASPAR_CNE/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/JASPAR_CNE/Makefile ++ $(AUTOMAKE) --gnits emboss/data/JASPAR_CNE/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/JASPAR_CORE/Makefile.in EMBOSS-6.3.1/emboss/data/JASPAR_CORE/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/JASPAR_CORE/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/JASPAR_CORE/Makefile.in 2010-08-02 17:23:25.283143010 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/JASPAR_CORE/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/JASPAR_CORE/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/JASPAR_CORE/Makefile ++ $(AUTOMAKE) --gnits emboss/data/JASPAR_CORE/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/JASPAR_FAM/Makefile.in EMBOSS-6.3.1/emboss/data/JASPAR_FAM/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/JASPAR_FAM/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/JASPAR_FAM/Makefile.in 2010-08-02 17:23:25.353143778 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/JASPAR_FAM/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/JASPAR_FAM/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/JASPAR_FAM/Makefile ++ $(AUTOMAKE) --gnits emboss/data/JASPAR_FAM/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/JASPAR_PBM/Makefile.in EMBOSS-6.3.1/emboss/data/JASPAR_PBM/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/JASPAR_PBM/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/JASPAR_PBM/Makefile.in 2010-08-02 17:23:25.422143149 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/JASPAR_PBM/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/JASPAR_PBM/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/JASPAR_PBM/Makefile ++ $(AUTOMAKE) --gnits emboss/data/JASPAR_PBM/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/JASPAR_PBM_HLH/Makefile.in EMBOSS-6.3.1/emboss/data/JASPAR_PBM_HLH/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/JASPAR_PBM_HLH/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/JASPAR_PBM_HLH/Makefile.in 2010-08-02 17:23:25.492142870 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/JASPAR_PBM_HLH/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/JASPAR_PBM_HLH/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/JASPAR_PBM_HLH/Makefile ++ $(AUTOMAKE) --gnits emboss/data/JASPAR_PBM_HLH/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/JASPAR_PBM_HOMEO/Makefile.in EMBOSS-6.3.1/emboss/data/JASPAR_PBM_HOMEO/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/JASPAR_PBM_HOMEO/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/JASPAR_PBM_HOMEO/Makefile.in 2010-08-02 17:23:25.561143149 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/JASPAR_PBM_HOMEO/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/JASPAR_PBM_HOMEO/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/JASPAR_PBM_HOMEO/Makefile ++ $(AUTOMAKE) --gnits emboss/data/JASPAR_PBM_HOMEO/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/JASPAR_PHYLOFACTS/Makefile.in EMBOSS-6.3.1/emboss/data/JASPAR_PHYLOFACTS/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/JASPAR_PHYLOFACTS/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/JASPAR_PHYLOFACTS/Makefile.in 2010-08-02 17:23:25.630143079 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/JASPAR_PHYLOFACTS/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/JASPAR_PHYLOFACTS/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/JASPAR_PHYLOFACTS/Makefile ++ $(AUTOMAKE) --gnits emboss/data/JASPAR_PHYLOFACTS/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/JASPAR_POLII/Makefile.in EMBOSS-6.3.1/emboss/data/JASPAR_POLII/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/JASPAR_POLII/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/JASPAR_POLII/Makefile.in 2010-08-02 17:23:25.704143778 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/JASPAR_POLII/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/JASPAR_POLII/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/JASPAR_POLII/Makefile ++ $(AUTOMAKE) --gnits emboss/data/JASPAR_POLII/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/JASPAR_SPLICE/Makefile.in EMBOSS-6.3.1/emboss/data/JASPAR_SPLICE/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/JASPAR_SPLICE/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/JASPAR_SPLICE/Makefile.in 2010-08-02 17:23:25.777143568 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/JASPAR_SPLICE/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/JASPAR_SPLICE/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/JASPAR_SPLICE/Makefile ++ $(AUTOMAKE) --gnits emboss/data/JASPAR_SPLICE/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/Makefile.in EMBOSS-6.3.1/emboss/data/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/Makefile.in 2010-08-02 17:23:25.863143219 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -191,6 +191,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -318,9 +320,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/Makefile ++ $(AUTOMAKE) --gnits emboss/data/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/PRINTS/Makefile.in EMBOSS-6.3.1/emboss/data/PRINTS/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/PRINTS/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/PRINTS/Makefile.in 2010-08-02 17:23:25.935143359 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/PRINTS/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/PRINTS/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/PRINTS/Makefile ++ $(AUTOMAKE) --gnits emboss/data/PRINTS/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/PROSITE/Makefile.in EMBOSS-6.3.1/emboss/data/PROSITE/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/PROSITE/Makefile.in 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/PROSITE/Makefile.in 2010-08-02 17:23:26.007143918 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/PROSITE/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/PROSITE/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/PROSITE/Makefile ++ $(AUTOMAKE) --gnits emboss/data/PROSITE/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/data/REBASE/Makefile.in EMBOSS-6.3.1/emboss/data/REBASE/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/data/REBASE/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/data/REBASE/Makefile.in 2010-08-02 17:23:26.080143359 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -237,9 +239,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/data/REBASE/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/data/REBASE/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/data/REBASE/Makefile ++ $(AUTOMAKE) --gnits emboss/data/REBASE/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/emboss/Makefile.in EMBOSS-6.3.1/emboss/Makefile.in +--- EMBOSS-6.3.1.orig/emboss/Makefile.in 2010-08-02 17:23:03.949267957 -0400 ++++ EMBOSS-6.3.1/emboss/Makefile.in 2010-08-02 17:23:24.902143429 -0400 +@@ -120,9 +120,8 @@ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ +- $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -137,7 +136,7 @@ + aaindexextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_abiview_OBJECTS = abiview.$(OBJEXT) + abiview_OBJECTS = $(am_abiview_OBJECTS) +@@ -145,23 +144,21 @@ + abiview_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_acdc_OBJECTS = acdc.$(OBJEXT) + acdc_OBJECTS = $(am_acdc_OBJECTS) + acdc_LDADD = $(LDADD) + acdc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_acdgalaxy_OBJECTS = acdgalaxy.$(OBJEXT) + acdgalaxy_OBJECTS = $(am_acdgalaxy_OBJECTS) + acdgalaxy_LDADD = $(LDADD) + acdgalaxy_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_acdlog_OBJECTS = acdlog.$(OBJEXT) + acdlog_OBJECTS = $(am_acdlog_OBJECTS) +@@ -169,15 +166,14 @@ + acdlog_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_acdpretty_OBJECTS = acdpretty.$(OBJEXT) + acdpretty_OBJECTS = $(am_acdpretty_OBJECTS) + acdpretty_LDADD = $(LDADD) + acdpretty_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_acdrelations_OBJECTS = acdrelations.$(OBJEXT) + acdrelations_OBJECTS = $(am_acdrelations_OBJECTS) +@@ -185,7 +181,7 @@ + acdrelations_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_acdtable_OBJECTS = acdtable.$(OBJEXT) + acdtable_OBJECTS = $(am_acdtable_OBJECTS) +@@ -193,47 +189,42 @@ + acdtable_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_acdtrace_OBJECTS = acdtrace.$(OBJEXT) + acdtrace_OBJECTS = $(am_acdtrace_OBJECTS) + acdtrace_LDADD = $(LDADD) + acdtrace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_acdvalid_OBJECTS = acdvalid.$(OBJEXT) + acdvalid_OBJECTS = $(am_acdvalid_OBJECTS) + acdvalid_LDADD = $(LDADD) + acdvalid_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_acdxsd_OBJECTS = acdxsd.$(OBJEXT) + acdxsd_OBJECTS = $(am_acdxsd_OBJECTS) + acdxsd_LDADD = $(LDADD) + acdxsd_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_ajtest_OBJECTS = ajtest.$(OBJEXT) + ajtest_OBJECTS = $(am_ajtest_OBJECTS) + ajtest_LDADD = $(LDADD) + ajtest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_aligncopy_OBJECTS = aligncopy.$(OBJEXT) + aligncopy_OBJECTS = $(am_aligncopy_OBJECTS) + aligncopy_LDADD = $(LDADD) + aligncopy_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_aligncopypair_OBJECTS = aligncopypair.$(OBJEXT) + aligncopypair_OBJECTS = $(am_aligncopypair_OBJECTS) +@@ -241,7 +232,7 @@ + aligncopypair_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_antigenic_OBJECTS = antigenic.$(OBJEXT) + antigenic_OBJECTS = $(am_antigenic_OBJECTS) +@@ -249,7 +240,7 @@ + antigenic_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_backtranambig_OBJECTS = backtranambig.$(OBJEXT) + backtranambig_OBJECTS = $(am_backtranambig_OBJECTS) +@@ -257,7 +248,7 @@ + backtranambig_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_backtranseq_OBJECTS = backtranseq.$(OBJEXT) + backtranseq_OBJECTS = $(am_backtranseq_OBJECTS) +@@ -265,7 +256,7 @@ + backtranseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_banana_OBJECTS = banana.$(OBJEXT) + banana_OBJECTS = $(am_banana_OBJECTS) +@@ -273,55 +264,49 @@ + banana_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_biosed_OBJECTS = biosed.$(OBJEXT) + biosed_OBJECTS = $(am_biosed_OBJECTS) + biosed_LDADD = $(LDADD) + biosed_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_btwisted_OBJECTS = btwisted.$(OBJEXT) + btwisted_OBJECTS = $(am_btwisted_OBJECTS) + btwisted_LDADD = $(LDADD) + btwisted_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_cai_OBJECTS = cai.$(OBJEXT) + cai_OBJECTS = $(am_cai_OBJECTS) + cai_LDADD = $(LDADD) + cai_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_chaos_OBJECTS = chaos.$(OBJEXT) + chaos_OBJECTS = $(am_chaos_OBJECTS) + chaos_LDADD = $(LDADD) + chaos_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_charge_OBJECTS = charge.$(OBJEXT) + charge_OBJECTS = $(am_charge_OBJECTS) + charge_LDADD = $(LDADD) + charge_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_checktrans_OBJECTS = checktrans.$(OBJEXT) + checktrans_OBJECTS = $(am_checktrans_OBJECTS) + checktrans_LDADD = $(LDADD) + checktrans_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_chips_OBJECTS = chips.$(OBJEXT) + chips_OBJECTS = $(am_chips_OBJECTS) +@@ -329,71 +314,63 @@ + chips_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_cirdna_OBJECTS = cirdna.$(OBJEXT) + cirdna_OBJECTS = $(am_cirdna_OBJECTS) + cirdna_LDADD = $(LDADD) + cirdna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_codcmp_OBJECTS = codcmp.$(OBJEXT) + codcmp_OBJECTS = $(am_codcmp_OBJECTS) + codcmp_LDADD = $(LDADD) + codcmp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la 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$(LDADD) + ensembltest_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_entrails_OBJECTS = entrails.$(OBJEXT) + entrails_OBJECTS = $(am_entrails_OBJECTS) +@@ -689,15 +639,14 @@ + entrails_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_entrailsbook_OBJECTS = entrailsbook.$(OBJEXT) + entrailsbook_OBJECTS = $(am_entrailsbook_OBJECTS) + entrailsbook_LDADD = $(LDADD) + entrailsbook_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_entrailshtml_OBJECTS = entrailshtml.$(OBJEXT) + entrailshtml_OBJECTS = $(am_entrailshtml_OBJECTS) +@@ -705,7 +654,7 @@ + entrailshtml_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_entrailswiki_OBJECTS = entrailswiki.$(OBJEXT) + entrailswiki_OBJECTS = $(am_entrailswiki_OBJECTS) +@@ -713,7 +662,7 @@ + entrailswiki_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_entret_OBJECTS = entret.$(OBJEXT) + entret_OBJECTS = $(am_entret_OBJECTS) +@@ -721,15 +670,14 @@ + entret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_epestfind_OBJECTS = epestfind.$(OBJEXT) + epestfind_OBJECTS = $(am_epestfind_OBJECTS) + epestfind_LDADD = $(LDADD) + epestfind_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_eprimer3_OBJECTS = eprimer3.$(OBJEXT) + eprimer3_OBJECTS = $(am_eprimer3_OBJECTS) +@@ -737,15 +685,14 @@ + eprimer3_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_equicktandem_OBJECTS = equicktandem.$(OBJEXT) + equicktandem_OBJECTS = $(am_equicktandem_OBJECTS) + equicktandem_LDADD = $(LDADD) + equicktandem_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_est2genome_OBJECTS = est2genome.$(OBJEXT) + est2genome_OBJECTS = $(am_est2genome_OBJECTS) +@@ -753,7 +700,7 @@ + est2genome_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_etandem_OBJECTS = etandem.$(OBJEXT) + etandem_OBJECTS = $(am_etandem_OBJECTS) +@@ -761,15 +708,14 @@ + etandem_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_extractalign_OBJECTS = extractalign.$(OBJEXT) + extractalign_OBJECTS = $(am_extractalign_OBJECTS) + extractalign_LDADD = $(LDADD) + extractalign_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_extractfeat_OBJECTS = extractfeat.$(OBJEXT) + extractfeat_OBJECTS = $(am_extractfeat_OBJECTS) +@@ -777,7 +723,7 @@ + extractfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_extractseq_OBJECTS = extractseq.$(OBJEXT) + extractseq_OBJECTS = $(am_extractseq_OBJECTS) +@@ -785,7 +731,7 @@ + extractseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_featcopy_OBJECTS = featcopy.$(OBJEXT) + featcopy_OBJECTS = $(am_featcopy_OBJECTS) +@@ -793,15 +739,14 @@ + featcopy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_featreport_OBJECTS = featreport.$(OBJEXT) + featreport_OBJECTS = $(am_featreport_OBJECTS) + featreport_LDADD = $(LDADD) + featreport_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_findkm_OBJECTS = findkm.$(OBJEXT) + findkm_OBJECTS = $(am_findkm_OBJECTS) +@@ -809,71 +754,63 @@ + findkm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_freak_OBJECTS = freak.$(OBJEXT) + freak_OBJECTS = $(am_freak_OBJECTS) + freak_LDADD = $(LDADD) + freak_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_fuzznuc_OBJECTS = fuzznuc.$(OBJEXT) + fuzznuc_OBJECTS = $(am_fuzznuc_OBJECTS) + fuzznuc_LDADD = $(LDADD) + fuzznuc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_fuzzpro_OBJECTS = fuzzpro.$(OBJEXT) + fuzzpro_OBJECTS = $(am_fuzzpro_OBJECTS) + fuzzpro_LDADD = $(LDADD) + fuzzpro_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_fuzztran_OBJECTS = fuzztran.$(OBJEXT) + fuzztran_OBJECTS = $(am_fuzztran_OBJECTS) + fuzztran_LDADD = $(LDADD) + fuzztran_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_garnier_OBJECTS = garnier.$(OBJEXT) + garnier_OBJECTS = $(am_garnier_OBJECTS) + garnier_LDADD = $(LDADD) + garnier_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_geecee_OBJECTS = geecee.$(OBJEXT) + geecee_OBJECTS = $(am_geecee_OBJECTS) + geecee_LDADD = $(LDADD) + geecee_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_getorf_OBJECTS = getorf.$(OBJEXT) + getorf_OBJECTS = $(am_getorf_OBJECTS) + getorf_LDADD = $(LDADD) + getorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_helixturnhelix_OBJECTS = helixturnhelix.$(OBJEXT) + helixturnhelix_OBJECTS = $(am_helixturnhelix_OBJECTS) + helixturnhelix_LDADD = $(LDADD) + helixturnhelix_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_histogramtest_OBJECTS = histogramtest.$(OBJEXT) + histogramtest_OBJECTS = $(am_histogramtest_OBJECTS) +@@ -881,7 +818,7 @@ + histogramtest_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_hmoment_OBJECTS = hmoment.$(OBJEXT) + hmoment_OBJECTS = $(am_hmoment_OBJECTS) +@@ -889,23 +826,21 @@ + hmoment_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_iep_OBJECTS = iep.$(OBJEXT) + iep_OBJECTS = $(am_iep_OBJECTS) + iep_LDADD = $(LDADD) + iep_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_infoalign_OBJECTS = infoalign.$(OBJEXT) + infoalign_OBJECTS = $(am_infoalign_OBJECTS) + infoalign_LDADD = $(LDADD) + infoalign_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_infobase_OBJECTS = infobase.$(OBJEXT) + infobase_OBJECTS = $(am_infobase_OBJECTS) +@@ -913,15 +848,14 @@ + infobase_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_inforesidue_OBJECTS = inforesidue.$(OBJEXT) + inforesidue_OBJECTS = $(am_inforesidue_OBJECTS) + inforesidue_LDADD = $(LDADD) + inforesidue_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_infoseq_OBJECTS = infoseq.$(OBJEXT) + infoseq_OBJECTS = $(am_infoseq_OBJECTS) +@@ -929,31 +863,28 @@ + infoseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_intconv_OBJECTS = intconv.$(OBJEXT) + intconv_OBJECTS = $(am_intconv_OBJECTS) + intconv_LDADD = $(LDADD) + intconv_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_isochore_OBJECTS = isochore.$(OBJEXT) + isochore_OBJECTS = $(am_isochore_OBJECTS) + isochore_LDADD = $(LDADD) + isochore_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_jaspextract_OBJECTS = jaspextract.$(OBJEXT) + jaspextract_OBJECTS = $(am_jaspextract_OBJECTS) + jaspextract_LDADD = $(LDADD) + jaspextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_jaspscan_OBJECTS = jaspscan.$(OBJEXT) + jaspscan_OBJECTS = $(am_jaspscan_OBJECTS) +@@ -961,15 +892,14 @@ + jaspscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_jembossctl_OBJECTS = jembossctl.$(OBJEXT) + jembossctl_OBJECTS = $(am_jembossctl_OBJECTS) + jembossctl_LDADD = $(LDADD) + jembossctl_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_lindna_OBJECTS = lindna.$(OBJEXT) + lindna_OBJECTS = $(am_lindna_OBJECTS) +@@ -977,23 +907,21 @@ + lindna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_listor_OBJECTS = listor.$(OBJEXT) + listor_OBJECTS = $(am_listor_OBJECTS) + listor_LDADD = $(LDADD) + listor_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + makenucseq_SOURCES = makenucseq.c + makenucseq_OBJECTS = makenucseq.$(OBJEXT) + makenucseq_LDADD = $(LDADD) + makenucseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + makeprotseq_SOURCES = makeprotseq.c + makeprotseq_OBJECTS = makeprotseq.$(OBJEXT) +@@ -1001,7 +929,7 @@ + makeprotseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_marscan_OBJECTS = marscan.$(OBJEXT) + marscan_OBJECTS = $(am_marscan_OBJECTS) +@@ -1009,15 +937,14 @@ + marscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_martattributes_OBJECTS = martattributes.$(OBJEXT) + martattributes_OBJECTS = $(am_martattributes_OBJECTS) + martattributes_LDADD = $(LDADD) + martattributes_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_martdatasets_OBJECTS = martdatasets.$(OBJEXT) + martdatasets_OBJECTS = $(am_martdatasets_OBJECTS) +@@ -1025,7 +952,7 @@ + martdatasets_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_martfilters_OBJECTS = martfilters.$(OBJEXT) + martfilters_OBJECTS = $(am_martfilters_OBJECTS) +@@ -1033,7 +960,7 @@ + martfilters_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_martquery_OBJECTS = martquery.$(OBJEXT) + martquery_OBJECTS = $(am_martquery_OBJECTS) +@@ -1041,7 +968,7 @@ + martquery_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_martregistry_OBJECTS = martregistry.$(OBJEXT) + martregistry_OBJECTS = $(am_martregistry_OBJECTS) +@@ -1049,7 +976,7 @@ + martregistry_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_martseqs_OBJECTS = martseqs.$(OBJEXT) + martseqs_OBJECTS = $(am_martseqs_OBJECTS) +@@ -1057,15 +984,14 @@ + martseqs_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_maskambignuc_OBJECTS = maskambignuc.$(OBJEXT) + maskambignuc_OBJECTS = $(am_maskambignuc_OBJECTS) + maskambignuc_LDADD = $(LDADD) + maskambignuc_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_maskambigprot_OBJECTS = maskambigprot.$(OBJEXT) + maskambigprot_OBJECTS = $(am_maskambigprot_OBJECTS) +@@ -1073,7 +999,7 @@ + maskambigprot_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_maskfeat_OBJECTS = maskfeat.$(OBJEXT) + maskfeat_OBJECTS = $(am_maskfeat_OBJECTS) +@@ -1081,31 +1007,28 @@ + maskfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_maskseq_OBJECTS = maskseq.$(OBJEXT) + maskseq_OBJECTS = $(am_maskseq_OBJECTS) + maskseq_LDADD = $(LDADD) + maskseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_matcher_OBJECTS = matcher.$(OBJEXT) + matcher_OBJECTS = $(am_matcher_OBJECTS) + matcher_LDADD = $(LDADD) + matcher_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_megamerger_OBJECTS = megamerger.$(OBJEXT) + megamerger_OBJECTS = $(am_megamerger_OBJECTS) + megamerger_LDADD = $(LDADD) + megamerger_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_merger_OBJECTS = merger.$(OBJEXT) + merger_OBJECTS = $(am_merger_OBJECTS) +@@ -1113,47 +1036,42 @@ + merger_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_msbar_OBJECTS = msbar.$(OBJEXT) + msbar_OBJECTS = $(am_msbar_OBJECTS) + msbar_LDADD = $(LDADD) + msbar_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_mwcontam_OBJECTS = mwcontam.$(OBJEXT) + mwcontam_OBJECTS = $(am_mwcontam_OBJECTS) + mwcontam_LDADD = $(LDADD) + mwcontam_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_mwfilter_OBJECTS = mwfilter.$(OBJEXT) + mwfilter_OBJECTS = $(am_mwfilter_OBJECTS) + mwfilter_LDADD = $(LDADD) + mwfilter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_needle_OBJECTS = needle.$(OBJEXT) + needle_OBJECTS = $(am_needle_OBJECTS) + needle_LDADD = $(LDADD) + needle_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_needleall_OBJECTS = needleall.$(OBJEXT) + needleall_OBJECTS = $(am_needleall_OBJECTS) + needleall_LDADD = $(LDADD) + needleall_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_newcoils_OBJECTS = newcoils.$(OBJEXT) + newcoils_OBJECTS = $(am_newcoils_OBJECTS) +@@ -1161,15 +1079,14 @@ + newcoils_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_newcpgreport_OBJECTS = newcpgreport.$(OBJEXT) + newcpgreport_OBJECTS = $(am_newcpgreport_OBJECTS) + newcpgreport_LDADD = $(LDADD) + newcpgreport_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_newcpgseek_OBJECTS = newcpgseek.$(OBJEXT) + newcpgseek_OBJECTS = $(am_newcpgseek_OBJECTS) +@@ -1177,7 +1094,7 @@ + newcpgseek_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_newseq_OBJECTS = newseq.$(OBJEXT) + newseq_OBJECTS = $(am_newseq_OBJECTS) +@@ -1185,63 +1102,56 @@ + newseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_nohtml_OBJECTS = nohtml.$(OBJEXT) + nohtml_OBJECTS = $(am_nohtml_OBJECTS) + nohtml_LDADD = $(LDADD) + nohtml_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_noreturn_OBJECTS = noreturn.$(OBJEXT) + noreturn_OBJECTS = $(am_noreturn_OBJECTS) + noreturn_LDADD = $(LDADD) + noreturn_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_nospace_OBJECTS = nospace.$(OBJEXT) + nospace_OBJECTS = $(am_nospace_OBJECTS) + nospace_LDADD = $(LDADD) + nospace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_notab_OBJECTS = notab.$(OBJEXT) + notab_OBJECTS = $(am_notab_OBJECTS) + notab_LDADD = $(LDADD) + notab_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_notseq_OBJECTS = notseq.$(OBJEXT) + notseq_OBJECTS = $(am_notseq_OBJECTS) + notseq_LDADD = $(LDADD) + notseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_nthseq_OBJECTS = nthseq.$(OBJEXT) + nthseq_OBJECTS = $(am_nthseq_OBJECTS) + nthseq_LDADD = $(LDADD) + nthseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_nthseqset_OBJECTS = nthseqset.$(OBJEXT) + nthseqset_OBJECTS = $(am_nthseqset_OBJECTS) + nthseqset_LDADD = $(LDADD) + nthseqset_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_octanol_OBJECTS = octanol.$(OBJEXT) + octanol_OBJECTS = $(am_octanol_OBJECTS) +@@ -1249,23 +1159,21 @@ + octanol_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_oddcomp_OBJECTS = oddcomp.$(OBJEXT) + oddcomp_OBJECTS = $(am_oddcomp_OBJECTS) + oddcomp_LDADD = $(LDADD) + oddcomp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_origsplitter_OBJECTS = origsplitter.$(OBJEXT) + origsplitter_OBJECTS = $(am_origsplitter_OBJECTS) + origsplitter_LDADD = $(LDADD) + origsplitter_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_origunion_OBJECTS = origunion.$(OBJEXT) + origunion_OBJECTS = $(am_origunion_OBJECTS) +@@ -1273,7 +1181,7 @@ + origunion_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_palindrome_OBJECTS = palindrome.$(OBJEXT) + palindrome_OBJECTS = $(am_palindrome_OBJECTS) +@@ -1281,7 +1189,7 @@ + palindrome_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_pasteseq_OBJECTS = pasteseq.$(OBJEXT) + pasteseq_OBJECTS = $(am_pasteseq_OBJECTS) +@@ -1289,23 +1197,21 @@ + pasteseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_patmatdb_OBJECTS = patmatdb.$(OBJEXT) + patmatdb_OBJECTS = $(am_patmatdb_OBJECTS) + patmatdb_LDADD = $(LDADD) + patmatdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_patmatmotifs_OBJECTS = patmatmotifs.$(OBJEXT) + patmatmotifs_OBJECTS = $(am_patmatmotifs_OBJECTS) + patmatmotifs_LDADD = $(LDADD) + patmatmotifs_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_patmattest_OBJECTS = patmattest.$(OBJEXT) + patmattest_OBJECTS = $(am_patmattest_OBJECTS) +@@ -1313,7 +1219,7 @@ + patmattest_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_pepcoil_OBJECTS = pepcoil.$(OBJEXT) + pepcoil_OBJECTS = $(am_pepcoil_OBJECTS) +@@ -1321,47 +1227,42 @@ + pepcoil_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_pepinfo_OBJECTS = pepinfo.$(OBJEXT) + pepinfo_OBJECTS = $(am_pepinfo_OBJECTS) + pepinfo_LDADD = $(LDADD) + pepinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_pepnet_OBJECTS = pepnet.$(OBJEXT) + pepnet_OBJECTS = $(am_pepnet_OBJECTS) + pepnet_LDADD = $(LDADD) + pepnet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_pepstats_OBJECTS = pepstats.$(OBJEXT) + pepstats_OBJECTS = $(am_pepstats_OBJECTS) + pepstats_LDADD = $(LDADD) + pepstats_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_pepwheel_OBJECTS = pepwheel.$(OBJEXT) + pepwheel_OBJECTS = $(am_pepwheel_OBJECTS) + pepwheel_LDADD = $(LDADD) + pepwheel_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_pepwindow_OBJECTS = pepwindow.$(OBJEXT) + pepwindow_OBJECTS = $(am_pepwindow_OBJECTS) + pepwindow_LDADD = $(LDADD) + pepwindow_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_pepwindowall_OBJECTS = pepwindowall.$(OBJEXT) + pepwindowall_OBJECTS = $(am_pepwindowall_OBJECTS) +@@ -1369,7 +1270,7 @@ + pepwindowall_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_plotcon_OBJECTS = plotcon.$(OBJEXT) + plotcon_OBJECTS = $(am_plotcon_OBJECTS) +@@ -1377,39 +1278,35 @@ + plotcon_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_plotorf_OBJECTS = plotorf.$(OBJEXT) + plotorf_OBJECTS = $(am_plotorf_OBJECTS) + plotorf_LDADD = $(LDADD) + plotorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_polydot_OBJECTS = polydot.$(OBJEXT) + polydot_OBJECTS = $(am_polydot_OBJECTS) + polydot_LDADD = $(LDADD) + polydot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_preg_OBJECTS = preg.$(OBJEXT) + preg_OBJECTS = $(am_preg_OBJECTS) + preg_LDADD = $(LDADD) + preg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_prettyplot_OBJECTS = prettyplot.$(OBJEXT) + prettyplot_OBJECTS = $(am_prettyplot_OBJECTS) + prettyplot_LDADD = $(LDADD) + prettyplot_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_prettyseq_OBJECTS = prettyseq.$(OBJEXT) + prettyseq_OBJECTS = $(am_prettyseq_OBJECTS) +@@ -1417,7 +1314,7 @@ + prettyseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_prima_OBJECTS = prima.$(OBJEXT) + prima_OBJECTS = $(am_prima_OBJECTS) +@@ -1425,23 +1322,21 @@ + prima_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_primers_OBJECTS = primers.$(OBJEXT) + primers_OBJECTS = $(am_primers_OBJECTS) + primers_LDADD = $(LDADD) + primers_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_primersearch_OBJECTS = primersearch.$(OBJEXT) + primersearch_OBJECTS = $(am_primersearch_OBJECTS) + primersearch_LDADD = $(LDADD) + primersearch_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_printsextract_OBJECTS = printsextract.$(OBJEXT) + printsextract_OBJECTS = $(am_printsextract_OBJECTS) +@@ -1449,7 +1344,7 @@ + printsextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_profit_OBJECTS = profit.$(OBJEXT) + profit_OBJECTS = $(am_profit_OBJECTS) +@@ -1457,31 +1352,28 @@ + profit_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_prophecy_OBJECTS = prophecy.$(OBJEXT) + prophecy_OBJECTS = $(am_prophecy_OBJECTS) + prophecy_LDADD = $(LDADD) + prophecy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_prophet_OBJECTS = prophet.$(OBJEXT) + prophet_OBJECTS = $(am_prophet_OBJECTS) + prophet_LDADD = $(LDADD) + prophet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_prosextract_OBJECTS = prosextract.$(OBJEXT) + prosextract_OBJECTS = $(am_prosextract_OBJECTS) + prosextract_LDADD = $(LDADD) + prosextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_pscan_OBJECTS = pscan.$(OBJEXT) + pscan_OBJECTS = $(am_pscan_OBJECTS) +@@ -1489,23 +1381,21 @@ + pscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_psiphi_OBJECTS = psiphi.$(OBJEXT) + psiphi_OBJECTS = $(am_psiphi_OBJECTS) + psiphi_LDADD = $(LDADD) + psiphi_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_rebaseextract_OBJECTS = rebaseextract.$(OBJEXT) + rebaseextract_OBJECTS = $(am_rebaseextract_OBJECTS) + rebaseextract_LDADD = $(LDADD) + rebaseextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_recoder_OBJECTS = recoder.$(OBJEXT) + recoder_OBJECTS = $(am_recoder_OBJECTS) +@@ -1513,71 +1403,63 @@ + recoder_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_redata_OBJECTS = redata.$(OBJEXT) + redata_OBJECTS = $(am_redata_OBJECTS) + redata_LDADD = $(LDADD) + redata_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_remap_OBJECTS = remap.$(OBJEXT) + remap_OBJECTS = $(am_remap_OBJECTS) + remap_LDADD = $(LDADD) + remap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_restover_OBJECTS = restover.$(OBJEXT) + restover_OBJECTS = $(am_restover_OBJECTS) + restover_LDADD = $(LDADD) + restover_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_restrict_OBJECTS = restrict.$(OBJEXT) + restrict_OBJECTS = $(am_restrict_OBJECTS) + restrict_LDADD = $(LDADD) + restrict_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_revseq_OBJECTS = revseq.$(OBJEXT) + revseq_OBJECTS = $(am_revseq_OBJECTS) + revseq_LDADD = $(LDADD) + revseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_seealso_OBJECTS = seealso.$(OBJEXT) + seealso_OBJECTS = $(am_seealso_OBJECTS) + seealso_LDADD = $(LDADD) + seealso_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_seqinfo_OBJECTS = seqinfo.$(OBJEXT) + seqinfo_OBJECTS = $(am_seqinfo_OBJECTS) + seqinfo_LDADD = $(LDADD) + seqinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_seqmatchall_OBJECTS = seqmatchall.$(OBJEXT) + seqmatchall_OBJECTS = $(am_seqmatchall_OBJECTS) + seqmatchall_LDADD = $(LDADD) + seqmatchall_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_seqret_OBJECTS = seqret.$(OBJEXT) + seqret_OBJECTS = $(am_seqret_OBJECTS) +@@ -1585,15 +1467,14 @@ + seqret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_seqretall_OBJECTS = seqretall.$(OBJEXT) + seqretall_OBJECTS = $(am_seqretall_OBJECTS) + seqretall_LDADD = $(LDADD) + seqretall_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_seqretallfeat_OBJECTS = seqretallfeat.$(OBJEXT) + seqretallfeat_OBJECTS = $(am_seqretallfeat_OBJECTS) +@@ -1601,7 +1482,7 @@ + seqretallfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_seqretset_OBJECTS = seqretset.$(OBJEXT) + seqretset_OBJECTS = $(am_seqretset_OBJECTS) +@@ -1609,7 +1490,7 @@ + seqretset_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_seqretsetall_OBJECTS = seqretsetall.$(OBJEXT) + seqretsetall_OBJECTS = $(am_seqretsetall_OBJECTS) +@@ -1617,7 +1498,7 @@ + seqretsetall_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_seqretsingle_OBJECTS = seqretsingle.$(OBJEXT) + seqretsingle_OBJECTS = $(am_seqretsingle_OBJECTS) +@@ -1625,7 +1506,7 @@ + seqretsingle_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_seqretsplit_OBJECTS = seqretsplit.$(OBJEXT) + seqretsplit_OBJECTS = $(am_seqretsplit_OBJECTS) +@@ -1633,7 +1514,7 @@ + seqretsplit_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_seqrettype_OBJECTS = seqrettype.$(OBJEXT) + seqrettype_OBJECTS = $(am_seqrettype_OBJECTS) +@@ -1641,7 +1522,7 @@ + seqrettype_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_showalign_OBJECTS = showalign.$(OBJEXT) + showalign_OBJECTS = $(am_showalign_OBJECTS) +@@ -1649,7 +1530,7 @@ + showalign_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_showdb_OBJECTS = showdb.$(OBJEXT) + showdb_OBJECTS = $(am_showdb_OBJECTS) +@@ -1657,47 +1538,42 @@ + showdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_showfeat_OBJECTS = showfeat.$(OBJEXT) + showfeat_OBJECTS = $(am_showfeat_OBJECTS) + showfeat_LDADD = $(LDADD) + showfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_showorf_OBJECTS = showorf.$(OBJEXT) + showorf_OBJECTS = $(am_showorf_OBJECTS) + showorf_LDADD = $(LDADD) + showorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- 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shuffleseq_LDADD = $(LDADD) + shuffleseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_sigcleave_OBJECTS = sigcleave.$(OBJEXT) + sigcleave_OBJECTS = $(am_sigcleave_OBJECTS) +@@ -1705,7 +1581,7 @@ + sigcleave_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_silent_OBJECTS = silent.$(OBJEXT) + silent_OBJECTS = $(am_silent_OBJECTS) +@@ -1713,39 +1589,35 @@ + silent_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_sirna_OBJECTS = sirna.$(OBJEXT) + sirna_OBJECTS = $(am_sirna_OBJECTS) + sirna_LDADD = $(LDADD) + sirna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_sixpack_OBJECTS = sixpack.$(OBJEXT) + sixpack_OBJECTS = $(am_sixpack_OBJECTS) + sixpack_LDADD = $(LDADD) + sixpack_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_sizeseq_OBJECTS = sizeseq.$(OBJEXT) + sizeseq_OBJECTS = $(am_sizeseq_OBJECTS) + sizeseq_LDADD = $(LDADD) + sizeseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_skipredundant_OBJECTS = skipredundant.$(OBJEXT) + skipredundant_OBJECTS = $(am_skipredundant_OBJECTS) + skipredundant_LDADD = $(LDADD) + skipredundant_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_skipseq_OBJECTS = skipseq.$(OBJEXT) + skipseq_OBJECTS = $(am_skipseq_OBJECTS) +@@ -1753,15 +1625,14 @@ + skipseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + splitsource_SOURCES = splitsource.c + splitsource_OBJECTS = splitsource.$(OBJEXT) + splitsource_LDADD = $(LDADD) + splitsource_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_splitter_OBJECTS = splitter.$(OBJEXT) + splitter_OBJECTS = $(am_splitter_OBJECTS) +@@ -1769,23 +1640,21 @@ + splitter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_sqltest_OBJECTS = sqltest.$(OBJEXT) + sqltest_OBJECTS = $(am_sqltest_OBJECTS) + sqltest_LDADD = $(LDADD) + sqltest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_stretcher_OBJECTS = stretcher.$(OBJEXT) + stretcher_OBJECTS = $(am_stretcher_OBJECTS) + stretcher_LDADD = $(LDADD) + stretcher_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_stssearch_OBJECTS = stssearch.$(OBJEXT) + stssearch_OBJECTS = $(am_stssearch_OBJECTS) +@@ -1793,7 +1662,7 @@ + stssearch_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_supermatcher_OBJECTS = supermatcher.$(OBJEXT) + supermatcher_OBJECTS = $(am_supermatcher_OBJECTS) +@@ -1801,7 +1670,7 @@ + supermatcher_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_syco_OBJECTS = syco.$(OBJEXT) + syco_OBJECTS = $(am_syco_OBJECTS) +@@ -1809,31 +1678,28 @@ + syco_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_tcode_OBJECTS = tcode.$(OBJEXT) + tcode_OBJECTS = $(am_tcode_OBJECTS) + tcode_LDADD = $(LDADD) + tcode_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_testplot_OBJECTS = testplot.$(OBJEXT) + testplot_OBJECTS = $(am_testplot_OBJECTS) + testplot_LDADD = $(LDADD) + testplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_textsearch_OBJECTS = textsearch.$(OBJEXT) + textsearch_OBJECTS = $(am_textsearch_OBJECTS) + textsearch_LDADD = $(LDADD) + textsearch_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_tfextract_OBJECTS = tfextract.$(OBJEXT) + tfextract_OBJECTS = $(am_tfextract_OBJECTS) +@@ -1841,7 +1707,7 @@ + tfextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_tfm_OBJECTS = tfm.$(OBJEXT) + tfm_OBJECTS = $(am_tfm_OBJECTS) +@@ -1849,31 +1715,28 @@ + tfm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_tfscan_OBJECTS = tfscan.$(OBJEXT) + tfscan_OBJECTS = $(am_tfscan_OBJECTS) + tfscan_LDADD = $(LDADD) + tfscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_tmap_OBJECTS = tmap.$(OBJEXT) + tmap_OBJECTS = $(am_tmap_OBJECTS) + tmap_LDADD = $(LDADD) + tmap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_tranalign_OBJECTS = tranalign.$(OBJEXT) + tranalign_OBJECTS = $(am_tranalign_OBJECTS) + tranalign_LDADD = $(LDADD) + tranalign_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_transeq_OBJECTS = transeq.$(OBJEXT) + transeq_OBJECTS = $(am_transeq_OBJECTS) +@@ -1881,15 +1744,14 @@ + transeq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_treetypedisplay_OBJECTS = treetypedisplay.$(OBJEXT) + treetypedisplay_OBJECTS = $(am_treetypedisplay_OBJECTS) + treetypedisplay_LDADD = $(LDADD) + treetypedisplay_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_trimest_OBJECTS = trimest.$(OBJEXT) + trimest_OBJECTS = $(am_trimest_OBJECTS) +@@ -1897,23 +1759,21 @@ + trimest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_trimseq_OBJECTS = trimseq.$(OBJEXT) + trimseq_OBJECTS = $(am_trimseq_OBJECTS) + trimseq_LDADD = $(LDADD) + trimseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_trimspace_OBJECTS = trimspace.$(OBJEXT) + trimspace_OBJECTS = $(am_trimspace_OBJECTS) + trimspace_LDADD = $(LDADD) + trimspace_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_twofeat_OBJECTS = twofeat.$(OBJEXT) + twofeat_OBJECTS = $(am_twofeat_OBJECTS) +@@ -1921,23 +1781,21 @@ + twofeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_union_OBJECTS = union.$(OBJEXT) + union_OBJECTS = $(am_union_OBJECTS) + union_LDADD = $(LDADD) + union_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_vectorstrip_OBJECTS = vectorstrip.$(OBJEXT) + vectorstrip_OBJECTS = $(am_vectorstrip_OBJECTS) + vectorstrip_LDADD = $(LDADD) + vectorstrip_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_water_OBJECTS = water.$(OBJEXT) + water_OBJECTS = $(am_water_OBJECTS) +@@ -1945,31 +1803,28 @@ + water_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_whichdb_OBJECTS = whichdb.$(OBJEXT) + whichdb_OBJECTS = $(am_whichdb_OBJECTS) + whichdb_LDADD = $(LDADD) + whichdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_wobble_OBJECTS = wobble.$(OBJEXT) + wobble_OBJECTS = $(am_wobble_OBJECTS) + wobble_LDADD = $(LDADD) + wobble_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_wordcount_OBJECTS = wordcount.$(OBJEXT) + wordcount_OBJECTS = $(am_wordcount_OBJECTS) + wordcount_LDADD = $(LDADD) + wordcount_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_wordfinder_OBJECTS = wordfinder.$(OBJEXT) + wordfinder_OBJECTS = $(am_wordfinder_OBJECTS) +@@ -1977,7 +1832,7 @@ + wordfinder_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_wordmatch_OBJECTS = wordmatch.$(OBJEXT) + wordmatch_OBJECTS = $(am_wordmatch_OBJECTS) +@@ -1985,7 +1840,7 @@ + wordmatch_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) $(am__DEPENDENCIES_1) \ + $(am__DEPENDENCIES_1) + am_wossname_OBJECTS = wossname.$(OBJEXT) + wossname_OBJECTS = $(am_wossname_OBJECTS) +@@ -1993,16 +1848,14 @@ + wossname_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + am_yank_OBJECTS = yank.$(OBJEXT) + yank_OBJECTS = $(am_yank_OBJECTS) + yank_LDADD = $(LDADD) + yank_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) \ +- $(am__DEPENDENCIES_1) ++ $(EXTRA_LDS) $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) + DEFAULT_INCLUDES = -I.@am__isrc@ + depcomp = $(SHELL) $(top_srcdir)/depcomp + am__depfiles_maybe = depfiles +@@ -2285,6 +2138,8 @@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ ++HAVE_MEMMOVE = @HAVE_MEMMOVE@ ++HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +diff -urP EMBOSS-6.3.1.orig/jemboss/images/Makefile.in EMBOSS-6.3.1/jemboss/images/Makefile.in +--- EMBOSS-6.3.1.orig/jemboss/images/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/jemboss/images/Makefile.in 2010-08-02 17:23:26.349152370 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -241,9 +243,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu jemboss/images/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits jemboss/images/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu jemboss/images/Makefile ++ $(AUTOMAKE) --gnits jemboss/images/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/jemboss/lib/axis/Makefile.in EMBOSS-6.3.1/jemboss/lib/axis/Makefile.in +--- EMBOSS-6.3.1.orig/jemboss/lib/axis/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/jemboss/lib/axis/Makefile.in 2010-08-02 17:23:26.561143289 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -240,9 +242,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu jemboss/lib/axis/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits jemboss/lib/axis/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu jemboss/lib/axis/Makefile ++ $(AUTOMAKE) --gnits jemboss/lib/axis/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/jemboss/lib/Makefile.in EMBOSS-6.3.1/jemboss/lib/Makefile.in +--- EMBOSS-6.3.1.orig/jemboss/lib/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/jemboss/lib/Makefile.in 2010-08-02 17:23:26.489268446 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -191,6 +191,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -280,9 +282,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu jemboss/lib/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits jemboss/lib/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu jemboss/lib/Makefile ++ $(AUTOMAKE) --gnits jemboss/lib/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/jemboss/Makefile.in EMBOSS-6.3.1/jemboss/Makefile.in +--- EMBOSS-6.3.1.orig/jemboss/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/jemboss/Makefile.in 2010-08-02 17:23:26.161144127 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -191,6 +191,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +diff -urP EMBOSS-6.3.1.orig/jemboss/resources/Makefile.in EMBOSS-6.3.1/jemboss/resources/Makefile.in +--- EMBOSS-6.3.1.orig/jemboss/resources/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/jemboss/resources/Makefile.in 2010-08-02 17:23:26.634144057 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -244,9 +246,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu jemboss/resources/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits jemboss/resources/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu jemboss/resources/Makefile ++ $(AUTOMAKE) --gnits jemboss/resources/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/jemboss/utils/Makefile.in EMBOSS-6.3.1/jemboss/utils/Makefile.in +--- EMBOSS-6.3.1.orig/jemboss/utils/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/jemboss/utils/Makefile.in 2010-08-02 17:23:26.712212083 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -239,9 +241,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu jemboss/utils/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits jemboss/utils/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu jemboss/utils/Makefile ++ $(AUTOMAKE) --gnits jemboss/utils/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/Makefile.in EMBOSS-6.3.1/Makefile.in +--- EMBOSS-6.3.1.orig/Makefile.in 2010-08-02 17:23:03.950268376 -0400 ++++ EMBOSS-6.3.1/Makefile.in 2010-08-02 17:23:27.458268375 -0400 +@@ -43,9 +43,8 @@ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ +- $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \ +diff -urP EMBOSS-6.3.1.orig/nucleus/Makefile.in EMBOSS-6.3.1/nucleus/Makefile.in +--- EMBOSS-6.3.1.orig/nucleus/Makefile.in 2010-08-02 17:23:03.951268237 -0400 ++++ EMBOSS-6.3.1/nucleus/Makefile.in 2010-08-02 17:23:26.813142660 -0400 +@@ -43,9 +43,8 @@ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ + $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ +- $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -135,6 +134,8 @@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ ++HAVE_MEMMOVE = @HAVE_MEMMOVE@ ++HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +diff -urP EMBOSS-6.3.1.orig/test/data/Makefile.in EMBOSS-6.3.1/test/data/Makefile.in +--- EMBOSS-6.3.1.orig/test/data/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/test/data/Makefile.in 2010-08-02 17:23:26.956142939 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -255,9 +257,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu test/data/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits test/data/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu test/data/Makefile ++ $(AUTOMAKE) --gnits test/data/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/test/embl/Makefile.in EMBOSS-6.3.1/test/embl/Makefile.in +--- EMBOSS-6.3.1.orig/test/embl/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/test/embl/Makefile.in 2010-08-02 17:23:27.028142869 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -242,9 +244,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu test/embl/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits test/embl/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu test/embl/Makefile ++ $(AUTOMAKE) --gnits test/embl/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/test/genbank/Makefile.in EMBOSS-6.3.1/test/genbank/Makefile.in +--- EMBOSS-6.3.1.orig/test/genbank/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/test/genbank/Makefile.in 2010-08-02 17:23:27.101268096 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -242,9 +244,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu test/genbank/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits test/genbank/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu test/genbank/Makefile ++ $(AUTOMAKE) --gnits test/genbank/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/test/Makefile.in EMBOSS-6.3.1/test/Makefile.in +--- EMBOSS-6.3.1.orig/test/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/test/Makefile.in 2010-08-02 17:23:26.884143009 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -167,6 +167,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -253,9 +255,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu test/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits test/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu test/Makefile ++ $(AUTOMAKE) --gnits test/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/test/pir/Makefile.in EMBOSS-6.3.1/test/pir/Makefile.in +--- EMBOSS-6.3.1.orig/test/pir/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/test/pir/Makefile.in 2010-08-02 17:23:27.172268026 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -245,9 +247,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu test/pir/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits test/pir/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu test/pir/Makefile ++ $(AUTOMAKE) --gnits test/pir/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/test/swiss/Makefile.in EMBOSS-6.3.1/test/swiss/Makefile.in +--- EMBOSS-6.3.1.orig/test/swiss/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/test/swiss/Makefile.in 2010-08-02 17:23:27.241267677 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -240,9 +242,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu test/swiss/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits test/swiss/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu test/swiss/Makefile ++ $(AUTOMAKE) --gnits test/swiss/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/test/swnew/Makefile.in EMBOSS-6.3.1/test/swnew/Makefile.in +--- EMBOSS-6.3.1.orig/test/swnew/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/test/swnew/Makefile.in 2010-08-02 17:23:27.311267887 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -241,9 +243,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu test/swnew/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits test/swnew/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu test/swnew/Makefile ++ $(AUTOMAKE) --gnits test/swnew/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -urP EMBOSS-6.3.1.orig/test/testdb/Makefile.in EMBOSS-6.3.1/test/testdb/Makefile.in +--- EMBOSS-6.3.1.orig/test/testdb/Makefile.in 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/test/testdb/Makefile.in 2010-08-02 17:23:27.381267677 -0400 +@@ -39,9 +39,9 @@ + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -151,6 +151,8 @@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -239,9 +241,9 @@ + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu test/testdb/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits test/testdb/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu test/testdb/Makefile ++ $(AUTOMAKE) --gnits test/testdb/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ diff --git a/EMBOSS-6.3.1-system-expat.patch b/EMBOSS-6.3.1-system-expat.patch new file mode 100644 index 0000000..e964356 --- /dev/null +++ b/EMBOSS-6.3.1-system-expat.patch @@ -0,0 +1,80 @@ +diff -up EMBOSS-6.3.1/ajax/acd/Makefile.am.system-expat EMBOSS-6.3.1/ajax/acd/Makefile.am +diff -up EMBOSS-6.3.1/ajax/acd/Makefile.in.system-expat EMBOSS-6.3.1/ajax/acd/Makefile.in +diff -up EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am.system-expat EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am +diff -up EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in.system-expat EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in +diff -up EMBOSS-6.3.1/ajax/core/Makefile.am.system-expat EMBOSS-6.3.1/ajax/core/Makefile.am +diff -up EMBOSS-6.3.1/ajax/core/Makefile.in.system-expat EMBOSS-6.3.1/ajax/core/Makefile.in +diff -up EMBOSS-6.3.1/ajax/graphics/Makefile.am.system-expat EMBOSS-6.3.1/ajax/graphics/Makefile.am +diff -up EMBOSS-6.3.1/ajax/graphics/Makefile.in.system-expat EMBOSS-6.3.1/ajax/graphics/Makefile.in +diff -up EMBOSS-6.3.1/ajax/Makefile.am.system-expat EMBOSS-6.3.1/ajax/Makefile.am +diff -up EMBOSS-6.3.1/ajax/Makefile.in.system-expat EMBOSS-6.3.1/ajax/Makefile.in +diff -up EMBOSS-6.3.1/configure.in.system-expat EMBOSS-6.3.1/configure.in +--- EMBOSS-6.3.1/configure.in.system-expat 2010-08-02 17:11:31.000000000 -0400 ++++ EMBOSS-6.3.1/configure.in 2010-08-02 17:12:11.831269942 -0400 +@@ -425,6 +425,7 @@ AC_ARG_ENABLE(systemlibs, + if test "${enable_systemlibs}" = "yes" ; then + have_systemlibs=yes + AC_CHECK_LIB(pcre, pcre_compile) ++ AC_CHECK_LIB(expat, XML_ParserCreate) + fi + AM_CONDITIONAL(ESYSTEMLIBS, test "$have_systemlibs" = "yes") + AC_SUBST(ESYSTEMLIBS) +diff -up EMBOSS-6.3.1/configure.system-expat EMBOSS-6.3.1/configure +--- EMBOSS-6.3.1/configure.system-expat 2010-08-02 17:11:31.825142800 -0400 ++++ EMBOSS-6.3.1/configure 2010-08-02 17:14:33.060269076 -0400 +@@ -15339,6 +15339,51 @@ _ACEOF + + fi + ++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for XML_ParserCreate in -lexpat" >&5 ++$as_echo_n "checking for XML_ParserCreate in -lexpat... " >&6; } ++if test "${ac_cv_lib_expat_XML_ParserCreate+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lexpat $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char XML_ParserCreate (); ++int ++main () ++{ ++return XML_ParserCreate (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_expat_XML_ParserCreate=yes ++else ++ ac_cv_lib_expat_XML_ParserCreate=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_expat_XML_ParserCreate" >&5 ++$as_echo "$ac_cv_lib_expat_XML_ParserCreate" >&6; } ++if test "x$ac_cv_lib_expat_XML_ParserCreate" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++#define HAVE_LIBEXPAT 1 ++_ACEOF ++ ++ LIBS="-lexpat $LIBS" ++ ++fi ++ + fi + if test "$have_systemlibs" = "yes"; then + ESYSTEMLIBS_TRUE= +diff -up EMBOSS-6.3.1/emboss/Makefile.am.system-expat EMBOSS-6.3.1/emboss/Makefile.am +diff -up EMBOSS-6.3.1/emboss/Makefile.in.system-expat EMBOSS-6.3.1/emboss/Makefile.in +diff -up EMBOSS-6.3.1/nucleus/Makefile.am.system-expat EMBOSS-6.3.1/nucleus/Makefile.am +diff -up EMBOSS-6.3.1/nucleus/Makefile.in.system-expat EMBOSS-6.3.1/nucleus/Makefile.in diff --git a/EMBOSS-6.3.1-system-hack.patch b/EMBOSS-6.3.1-system-hack.patch new file mode 100644 index 0000000..0407e7f --- /dev/null +++ b/EMBOSS-6.3.1-system-hack.patch @@ -0,0 +1,23 @@ +diff -up EMBOSS-6.3.1/ajax/Makefile.am.system EMBOSS-6.3.1/ajax/Makefile.am +--- EMBOSS-6.3.1/ajax/Makefile.am.system 2010-08-02 17:26:39.537175842 -0400 ++++ EMBOSS-6.3.1/ajax/Makefile.am 2010-08-02 17:26:50.081151953 -0400 +@@ -1,6 +1,4 @@ + ## Process this file with automake to produce Makefile.in +-if !ESYSTEMLIBS +-EXTRA_DIRS = expat zlib pcre +-endif ++EXTRA_DIRS = + + SUBDIRS = $(EXTRA_DIRS) core graphics ensembl ajaxdb acd +diff -up EMBOSS-6.3.1/ajax/Makefile.in.system EMBOSS-6.3.1/ajax/Makefile.in +--- EMBOSS-6.3.1/ajax/Makefile.in.system 2010-08-02 17:27:13.560269914 -0400 ++++ EMBOSS-6.3.1/ajax/Makefile.in 2010-08-02 17:27:24.406144161 -0400 +@@ -242,7 +242,7 @@ target_alias = @target_alias@ + top_build_prefix = @top_build_prefix@ + top_builddir = @top_builddir@ + top_srcdir = @top_srcdir@ +-@ESYSTEMLIBS_FALSE@EXTRA_DIRS = expat zlib pcre ++@ESYSTEMLIBS_FALSE@EXTRA_DIRS = + SUBDIRS = $(EXTRA_DIRS) core graphics ensembl ajaxdb acd + all: all-recursive + diff --git a/EMBOSS-6.3.1-system-pcre.patch b/EMBOSS-6.3.1-system-pcre.patch new file mode 100644 index 0000000..615a8c0 --- /dev/null +++ b/EMBOSS-6.3.1-system-pcre.patch @@ -0,0 +1,2776 @@ +diff -up EMBOSS-6.3.1/ajax/acd/Makefile.am.system-pcre EMBOSS-6.3.1/ajax/acd/Makefile.am +--- EMBOSS-6.3.1/ajax/acd/Makefile.am.system-pcre 2010-06-16 07:36:00.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/acd/Makefile.am 2010-08-02 15:53:45.289153815 -0400 +@@ -13,10 +13,10 @@ CYGWIN_LDACD = -L../../plplot -L../pcre + endif + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre + endif + +-INCLUDES = -I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/pcre \ ++INCLUDES = -I$(top_srcdir)/plplot \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core \ + -I$(top_srcdir)/ajax/graphics \ +diff -up EMBOSS-6.3.1/ajax/acd/Makefile.in.system-pcre EMBOSS-6.3.1/ajax/acd/Makefile.in +--- EMBOSS-6.3.1/ajax/acd/Makefile.in.system-pcre 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/acd/Makefile.in 2010-08-02 15:54:22.726269678 -0400 +@@ -130,8 +130,6 @@ ESYSTEMLIBS = @ESYSTEMLIBS@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ +-HAVE_MEMMOVE = @HAVE_MEMMOVE@ +-HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +@@ -258,8 +256,8 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL + @ISCYGWIN_TRUE@-L../graphics -L../ensembl -L../ajaxdb -lajaxdb -lensembl -lajaxg -lajax \ + @ISCYGWIN_TRUE@-leplplot -leexpat -lepcre -lezlib + +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib +-INCLUDES = -I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/pcre \ ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre ++INCLUDES = -I$(top_srcdir)/plplot \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core \ + -I$(top_srcdir)/ajax/graphics \ +@@ -286,9 +284,9 @@ $(srcdir)/Makefile.in: $(srcdir)/Makefi + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu ajax/acd/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits ajax/acd/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu ajax/acd/Makefile ++ $(AUTOMAKE) --gnits ajax/acd/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -up EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am.system-pcre EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am +--- EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am.system-pcre 2010-06-16 07:36:00.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am 2010-08-02 15:54:56.056144703 -0400 +@@ -13,11 +13,11 @@ CYGWIN_LDAJAXDB = -L../../plplot -L../pc + endif + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre + endif + + +-INCLUDES = -I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/pcre \ ++INCLUDES = -I$(top_srcdir)/plplot \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl + +diff -up EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in.system-pcre EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in +--- EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in.system-pcre 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in 2010-08-02 15:55:40.350270055 -0400 +@@ -130,8 +130,6 @@ ESYSTEMLIBS = @ESYSTEMLIBS@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ +-HAVE_MEMMOVE = @HAVE_MEMMOVE@ +-HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +@@ -257,8 +255,8 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL + @ISCYGWIN_TRUE@CYGWIN_LDAJAXDB = -L../../plplot -L../pcre -L../expat -L../zlib -L../core \ + @ISCYGWIN_TRUE@-L../ensembl -lensembl lajax -leplplot -leexpat -lepcre -lezlib + +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib +-INCLUDES = -I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/pcre \ ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre ++INCLUDES = -I$(top_srcdir)/plplot \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl + +@@ -284,9 +282,9 @@ $(srcdir)/Makefile.in: $(srcdir)/Makefi + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu ajax/ajaxdb/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits ajax/ajaxdb/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu ajax/ajaxdb/Makefile ++ $(AUTOMAKE) --gnits ajax/ajaxdb/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -up EMBOSS-6.3.1/ajax/core/ajreg.h.system-pcre EMBOSS-6.3.1/ajax/core/ajreg.h +--- EMBOSS-6.3.1/ajax/core/ajreg.h.system-pcre 2010-04-14 03:44:20.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/core/ajreg.h 2010-08-02 15:51:12.877269709 -0400 +@@ -16,9 +16,8 @@ extern "C" + #define ajreg_h + + #include "ajax.h" +-#include "pcre_config.h" +-#include "pcre_internal.h" +-#include "pcreposix.h" ++#include ++#include + + #define AJREG_OVECSIZE 30 + +@@ -41,7 +40,7 @@ extern "C" + ******************************************************************************/ + + typedef struct AjSRegexp { +- real_pcre *pcre; ++ struct real_pcre *pcre; + pcre_extra *extra; + int *ovector; + const char* orig; +diff -up EMBOSS-6.3.1/ajax/core/Makefile.am.system-pcre EMBOSS-6.3.1/ajax/core/Makefile.am +--- EMBOSS-6.3.1/ajax/core/Makefile.am.system-pcre 2010-06-16 07:36:00.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/core/Makefile.am 2010-08-02 15:56:46.987145446 -0400 +@@ -12,13 +12,13 @@ CYGWIN_LDAJAX = -L../../plplot -L../expa + endif + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre + endif + + + INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \ + -DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \ +--I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/pcre $(EXTRA_INCLUDES) ++-I$(top_srcdir)/plplot $(EXTRA_INCLUDES) + + AJAXSRC = ajalign.c ajarr.c ajassert.c \ + ajbase.c ajcall.c ajcod.c \ +diff -up EMBOSS-6.3.1/ajax/core/Makefile.in.system-pcre EMBOSS-6.3.1/ajax/core/Makefile.in +--- EMBOSS-6.3.1/ajax/core/Makefile.in.system-pcre 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/core/Makefile.in 2010-08-02 15:57:14.969269966 -0400 +@@ -139,8 +139,6 @@ ESYSTEMLIBS = @ESYSTEMLIBS@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ +-HAVE_MEMMOVE = @HAVE_MEMMOVE@ +-HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +@@ -266,10 +264,10 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL + @ISCYGWIN_TRUE@CYGWIN_LDAJAX = -L../../plplot -L../expat -L../pcre -L../zlib \ + @ISCYGWIN_TRUE@-leplplot -leexpat -lepcre -lezlib + +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre + INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \ + -DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \ +--I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/pcre $(EXTRA_INCLUDES) ++-I$(top_srcdir)/plplot $(EXTRA_INCLUDES) + + AJAXSRC = ajalign.c ajarr.c ajassert.c \ + ajbase.c ajcall.c ajcod.c \ +@@ -318,9 +316,9 @@ $(srcdir)/Makefile.in: $(srcdir)/Makefi + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu ajax/core/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits ajax/core/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu ajax/core/Makefile ++ $(AUTOMAKE) --gnits ajax/core/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -up EMBOSS-6.3.1/ajax/ensembl/Makefile.am.system-pcre EMBOSS-6.3.1/ajax/ensembl/Makefile.am +--- EMBOSS-6.3.1/ajax/ensembl/Makefile.am.system-pcre 2010-06-16 07:36:00.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/ensembl/Makefile.am 2010-08-02 15:57:44.938305995 -0400 +@@ -10,12 +10,12 @@ CYGWIN_LDENSEMBL = -L../../plplot -L../e + endif + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre + endif + + + INCLUDES = -I$(top_srcdir)/plplot $(EXTRA_INCLUDES) \ +--I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/ajax/core ++-I$(top_srcdir)/ajax/core + + ENSEMBLSRC = ensanalysis.c ensassembly.c ensassemblyexception.c \ + ensassemblymapper.c ensattribute.c ensbaseadaptor.c enscache.c \ +diff -up EMBOSS-6.3.1/ajax/ensembl/Makefile.in.system-pcre EMBOSS-6.3.1/ajax/ensembl/Makefile.in +--- EMBOSS-6.3.1/ajax/ensembl/Makefile.in.system-pcre 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/ensembl/Makefile.in 2010-08-02 15:58:24.860163822 -0400 +@@ -143,8 +143,6 @@ ESYSTEMLIBS = @ESYSTEMLIBS@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ +-HAVE_MEMMOVE = @HAVE_MEMMOVE@ +-HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +@@ -266,9 +264,9 @@ lib_LTLIBRARIES = libensembl.la + AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFLAGS) + @ISCYGWIN_TRUE@CYGWIN_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import + @ISCYGWIN_TRUE@CYGWIN_LDENSEMBL = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre + INCLUDES = -I$(top_srcdir)/plplot $(EXTRA_INCLUDES) \ +--I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/ajax/core ++-I$(top_srcdir)/ajax/core + + ENSEMBLSRC = ensanalysis.c ensassembly.c ensassemblyexception.c \ + ensassemblymapper.c ensattribute.c ensbaseadaptor.c enscache.c \ +@@ -316,9 +314,9 @@ $(srcdir)/Makefile.in: $(srcdir)/Makefi + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu ajax/ensembl/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits ajax/ensembl/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu ajax/ensembl/Makefile ++ $(AUTOMAKE) --gnits ajax/ensembl/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -up EMBOSS-6.3.1/ajax/graphics/Makefile.am.system-pcre EMBOSS-6.3.1/ajax/graphics/Makefile.am +--- EMBOSS-6.3.1/ajax/graphics/Makefile.am.system-pcre 2010-06-16 07:36:00.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/graphics/Makefile.am 2010-08-02 15:59:19.049155233 -0400 +@@ -10,11 +10,11 @@ CYGWIN_LDAJAXG = -L../../plplot -L../exp + endif + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre + endif + + +-INCLUDES = -I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/pcre \ ++INCLUDES = -I$(top_srcdir)/plplot \ + $(EXTRA_INCLUDES) -I$(top_srcdir)/ajax/core + + AJAXGSRC = ajgraph.c ajhist.c +diff -up EMBOSS-6.3.1/ajax/graphics/Makefile.in.system-pcre EMBOSS-6.3.1/ajax/graphics/Makefile.in +--- EMBOSS-6.3.1/ajax/graphics/Makefile.in.system-pcre 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/graphics/Makefile.in 2010-08-02 15:59:40.355144835 -0400 +@@ -130,8 +130,6 @@ ESYSTEMLIBS = @ESYSTEMLIBS@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ +-HAVE_MEMMOVE = @HAVE_MEMMOVE@ +-HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +@@ -253,8 +251,8 @@ lib_LTLIBRARIES = libajaxg.la + AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFLAGS) + @ISCYGWIN_TRUE@CYGWIN_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import + @ISCYGWIN_TRUE@CYGWIN_LDAJAXG = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat +-INCLUDES = -I$(top_srcdir)/plplot -I$(top_srcdir)/ajax/pcre \ ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre ++INCLUDES = -I$(top_srcdir)/plplot \ + $(EXTRA_INCLUDES) -I$(top_srcdir)/ajax/core + + AJAXGSRC = ajgraph.c ajhist.c +@@ -277,9 +275,9 @@ $(srcdir)/Makefile.in: $(srcdir)/Makefi + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu ajax/graphics/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits ajax/graphics/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu ajax/graphics/Makefile ++ $(AUTOMAKE) --gnits ajax/graphics/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -up EMBOSS-6.3.1/ajax/Makefile.am.system-pcre EMBOSS-6.3.1/ajax/Makefile.am +--- EMBOSS-6.3.1/ajax/Makefile.am.system-pcre 2010-06-16 06:26:45.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/Makefile.am 2010-08-02 16:00:21.489296489 -0400 +@@ -1,6 +1,6 @@ + ## Process this file with automake to produce Makefile.in + if !ESYSTEMLIBS +-EXTRA_DIRS = expat zlib ++EXTRA_DIRS = expat zlib pcre + endif + +-SUBDIRS = pcre $(EXTRA_DIRS) core graphics ensembl ajaxdb acd ++SUBDIRS = $(EXTRA_DIRS) core graphics ensembl ajaxdb acd +diff -up EMBOSS-6.3.1/ajax/Makefile.in.system-pcre EMBOSS-6.3.1/ajax/Makefile.in +--- EMBOSS-6.3.1/ajax/Makefile.in.system-pcre 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/Makefile.in 2010-08-02 16:00:52.531270101 -0400 +@@ -121,8 +121,6 @@ ESYSTEMLIBS = @ESYSTEMLIBS@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ +-HAVE_MEMMOVE = @HAVE_MEMMOVE@ +-HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +@@ -240,8 +238,8 @@ target_alias = @target_alias@ + top_build_prefix = @top_build_prefix@ + top_builddir = @top_builddir@ + top_srcdir = @top_srcdir@ +-@ESYSTEMLIBS_FALSE@EXTRA_DIRS = expat zlib +-SUBDIRS = pcre $(EXTRA_DIRS) core graphics ensembl ajaxdb acd ++@ESYSTEMLIBS_FALSE@EXTRA_DIRS = expat zlib pcre ++SUBDIRS = $(EXTRA_DIRS) core graphics ensembl ajaxdb acd + all: all-recursive + + .SUFFIXES: +@@ -254,9 +252,9 @@ $(srcdir)/Makefile.in: $(srcdir)/Makefi + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu ajax/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits ajax/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu ajax/Makefile ++ $(AUTOMAKE) --gnits ajax/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +diff -up EMBOSS-6.3.1/configure.in.system-pcre EMBOSS-6.3.1/configure.in +--- EMBOSS-6.3.1/configure.in.system-pcre 2010-07-19 07:45:34.000000000 -0400 ++++ EMBOSS-6.3.1/configure.in 2010-08-02 16:23:19.710145317 -0400 +@@ -196,30 +196,6 @@ fi + dnl endian test for indexing system + AC_C_BIGENDIAN(CPPFLAGS="$CPPFLAGS -DBENDIAN",CPPFLAGS="$CPPFLAGS -DLENDIAN") + +-dnl PCRE library definitions - see the MAJOR and MINOR values +-dnl to see which version's configure.in these lines come from +- +-dnl Provide the current PCRE version information. Do not use numbers +-dnl with leading zeros for the minor version, as they end up in a C +-dnl macro, and may be treated as octal constants. Stick to single +-dnl digits for minor numbers less than 10. There are unlikely to be +-dnl that many releases anyway. +- +-PCRE_MAJOR=7 +-PCRE_MINOR=9 +-PCRE_DATE=11-Apr-2009 +-PCRE_VERSION=${PCRE_MAJOR}.${PCRE_MINOR} +- +-dnl Default values for miscellaneous macros +- +-POSIX_MALLOC_THRESHOLD=-DPOSIX_MALLOC_THRESHOLD=10 +- +-dnl Provide versioning information for libtool shared libraries that +-dnl are built by default on Unix systems. +- +-PCRE_LIB_VERSION=0:1:0 +-PCRE_POSIXLIB_VERSION=0:0:0 +- + + dnl Define where the EMBOSS package is located + AC_SUBST(AJAX_FIXED_ROOT) +@@ -447,6 +423,7 @@ AC_ARG_ENABLE(systemlibs, + AS_HELP_STRING([--enable-systemlibs], [utility for RPM/dpkg bundles])) + if test "${enable_systemlibs}" = "yes" ; then + have_systemlibs=yes ++ AC_CHECK_LIB(pcre, pcre_compile) + fi + AM_CONDITIONAL(ESYSTEMLIBS, test "$have_systemlibs" = "yes") + AC_SUBST(ESYSTEMLIBS) +@@ -683,7 +660,7 @@ CHECK_THREADS + + + AC_OUTPUT([plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile +-ajax/pcre/Makefile ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile ++ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile + ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile + ajax/acd/Makefile + emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile +diff -up EMBOSS-6.3.1/configure.system-pcre EMBOSS-6.3.1/configure +--- EMBOSS-6.3.1/configure.system-pcre 2010-08-02 16:26:26.125269290 -0400 ++++ EMBOSS-6.3.1/configure 2010-08-02 16:23:38.092267468 -0400 +@@ -11891,20 +11891,6 @@ $as_echo "#define AC_APPLE_UNIVERSAL_BUI + + + +-PCRE_MAJOR=7 +-PCRE_MINOR=9 +-PCRE_DATE=11-Apr-2009 +-PCRE_VERSION=${PCRE_MAJOR}.${PCRE_MINOR} +- +- +-POSIX_MALLOC_THRESHOLD=-DPOSIX_MALLOC_THRESHOLD=10 +- +- +-PCRE_LIB_VERSION=0:1:0 +-PCRE_POSIXLIB_VERSION=0:0:0 +- +- +- + AJAX_FIXED_ROOT="\\\"`pwd`/emboss\\\"" + + EMBOSS_TOP=`pwd` +@@ -14915,6 +14901,51 @@ fi + + if test "${enable_systemlibs}" = "yes" ; then + have_systemlibs=yes ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for pcre_compile in -lpcre" >&5 ++$as_echo_n "checking for pcre_compile in -lpcre... " >&6; } ++if test "${ac_cv_lib_pcre_pcre_compile+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lpcre $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char pcre_compile (); ++int ++main () ++{ ++return pcre_compile (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_pcre_pcre_compile=yes ++else ++ ac_cv_lib_pcre_pcre_compile=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_pcre_pcre_compile" >&5 ++$as_echo "$ac_cv_lib_pcre_pcre_compile" >&6; } ++if test "x$ac_cv_lib_pcre_pcre_compile" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++#define HAVE_LIBPCRE 1 ++_ACEOF ++ ++ LIBS="-lpcre $LIBS" ++ ++fi ++ + fi + if test "$have_systemlibs" = "yes"; then + ESYSTEMLIBS_TRUE= +@@ -15268,7 +15299,7 @@ fi + + + +-ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile ajax/pcre/Makefile ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/JASPAR_PBM/Makefile emboss/data/JASPAR_PBM_HLH/Makefile emboss/data/JASPAR_PBM_HOMEO/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile" ++ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/JASPAR_PBM/Makefile emboss/data/JASPAR_PBM_HLH/Makefile emboss/data/JASPAR_PBM_HOMEO/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile" + + cat >confcache <<\_ACEOF + # This file is a shell script that caches the results of configure +@@ -16326,7 +16357,6 @@ do + "plplot/lib/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/lib/Makefile" ;; + "nucleus/Makefile") CONFIG_FILES="$CONFIG_FILES nucleus/Makefile" ;; + "ajax/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/Makefile" ;; +- "ajax/pcre/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/pcre/Makefile" ;; + "ajax/expat/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/expat/Makefile" ;; + "ajax/zlib/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/zlib/Makefile" ;; + "ajax/core/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/core/Makefile" ;; +diff -up EMBOSS-6.3.1/emboss/Makefile.am.system-pcre EMBOSS-6.3.1/emboss/Makefile.am +--- EMBOSS-6.3.1/emboss/Makefile.am.system-pcre 2010-06-16 06:26:45.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/Makefile.am 2010-08-02 16:11:45.469145034 -0400 +@@ -79,10 +79,10 @@ wordcount wordfinder wordmatch wossname + yank + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre + endif + +-INCLUDES = -I$(top_srcdir)/nucleus -I$(top_srcdir)/ajax/pcre \ ++INCLUDES = -I$(top_srcdir)/nucleus \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ + -I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \ +@@ -319,7 +319,7 @@ testplot_SOURCES = testplot.c + treetypedisplay_SOURCES = treetypedisplay.c + + if !ESYSTEMLIBS +-EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ++EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la + endif + + +@@ -327,7 +327,7 @@ LDADD = ../nucleus/libnucleus.la ../ajax + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ + $(EXTRA_LDS) \ +- ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ ../plplot/libeplplot.la \ + $(XLIB) + + pkgdata_DATA = emboss.default.template +diff -up EMBOSS-6.3.1/emboss/Makefile.in.system-pcre EMBOSS-6.3.1/emboss/Makefile.in +--- EMBOSS-6.3.1/emboss/Makefile.in.system-pcre 2010-07-19 07:55:41.000000000 -0400 ++++ EMBOSS-6.3.1/emboss/Makefile.in 2010-08-02 16:20:31.985155163 -0400 +@@ -136,7 +136,7 @@ am__DEPENDENCIES_1 = + aaindexextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_abiview_OBJECTS = abiview.$(OBJEXT) + abiview_OBJECTS = $(am_abiview_OBJECTS) +@@ -144,7 +144,7 @@ abiview_LDADD = $(LDADD) + abiview_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_acdc_OBJECTS = acdc.$(OBJEXT) + acdc_OBJECTS = $(am_acdc_OBJECTS) +@@ -152,7 +152,7 @@ acdc_LDADD = $(LDADD) + acdc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_acdgalaxy_OBJECTS = acdgalaxy.$(OBJEXT) + acdgalaxy_OBJECTS = $(am_acdgalaxy_OBJECTS) +@@ -160,7 +160,7 @@ acdgalaxy_LDADD = $(LDADD) + acdgalaxy_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_acdlog_OBJECTS = acdlog.$(OBJEXT) + acdlog_OBJECTS = $(am_acdlog_OBJECTS) +@@ -168,7 +168,7 @@ acdlog_LDADD = $(LDADD) + acdlog_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_acdpretty_OBJECTS = acdpretty.$(OBJEXT) + acdpretty_OBJECTS = $(am_acdpretty_OBJECTS) +@@ -176,7 +176,7 @@ acdpretty_LDADD = $(LDADD) + acdpretty_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_acdrelations_OBJECTS = acdrelations.$(OBJEXT) + acdrelations_OBJECTS = $(am_acdrelations_OBJECTS) +@@ -184,7 +184,7 @@ acdrelations_LDADD = $(LDADD) + acdrelations_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_acdtable_OBJECTS = acdtable.$(OBJEXT) + acdtable_OBJECTS = $(am_acdtable_OBJECTS) +@@ -192,7 +192,7 @@ acdtable_LDADD = $(LDADD) + acdtable_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_acdtrace_OBJECTS = acdtrace.$(OBJEXT) + acdtrace_OBJECTS = $(am_acdtrace_OBJECTS) +@@ -200,7 +200,7 @@ acdtrace_LDADD = $(LDADD) + acdtrace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_acdvalid_OBJECTS = acdvalid.$(OBJEXT) + acdvalid_OBJECTS = $(am_acdvalid_OBJECTS) +@@ -208,7 +208,7 @@ acdvalid_LDADD = $(LDADD) + acdvalid_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_acdxsd_OBJECTS = acdxsd.$(OBJEXT) + acdxsd_OBJECTS = $(am_acdxsd_OBJECTS) +@@ -216,7 +216,7 @@ acdxsd_LDADD = $(LDADD) + acdxsd_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_ajtest_OBJECTS = ajtest.$(OBJEXT) + ajtest_OBJECTS = $(am_ajtest_OBJECTS) +@@ -224,7 +224,7 @@ ajtest_LDADD = $(LDADD) + ajtest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_aligncopy_OBJECTS = aligncopy.$(OBJEXT) + aligncopy_OBJECTS = $(am_aligncopy_OBJECTS) +@@ -232,7 +232,7 @@ aligncopy_LDADD = $(LDADD) + aligncopy_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_aligncopypair_OBJECTS = aligncopypair.$(OBJEXT) + aligncopypair_OBJECTS = $(am_aligncopypair_OBJECTS) +@@ -240,7 +240,7 @@ aligncopypair_LDADD = $(LDADD) + aligncopypair_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_antigenic_OBJECTS = antigenic.$(OBJEXT) + antigenic_OBJECTS = $(am_antigenic_OBJECTS) +@@ -248,7 +248,7 @@ antigenic_LDADD = $(LDADD) + antigenic_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_backtranambig_OBJECTS = backtranambig.$(OBJEXT) + backtranambig_OBJECTS = $(am_backtranambig_OBJECTS) +@@ -256,7 +256,7 @@ backtranambig_LDADD = $(LDADD) + backtranambig_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_backtranseq_OBJECTS = backtranseq.$(OBJEXT) + backtranseq_OBJECTS = $(am_backtranseq_OBJECTS) +@@ -264,7 +264,7 @@ backtranseq_LDADD = $(LDADD) + backtranseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_banana_OBJECTS = banana.$(OBJEXT) + banana_OBJECTS = $(am_banana_OBJECTS) +@@ -272,7 +272,7 @@ banana_LDADD = $(LDADD) + banana_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_biosed_OBJECTS = biosed.$(OBJEXT) + biosed_OBJECTS = $(am_biosed_OBJECTS) +@@ -280,7 +280,7 @@ biosed_LDADD = $(LDADD) + biosed_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_btwisted_OBJECTS = btwisted.$(OBJEXT) + btwisted_OBJECTS = $(am_btwisted_OBJECTS) +@@ -288,7 +288,7 @@ btwisted_LDADD = $(LDADD) + btwisted_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_cai_OBJECTS = cai.$(OBJEXT) + cai_OBJECTS = $(am_cai_OBJECTS) +@@ -296,7 +296,7 @@ cai_LDADD = $(LDADD) + cai_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_chaos_OBJECTS = chaos.$(OBJEXT) + chaos_OBJECTS = $(am_chaos_OBJECTS) +@@ -304,7 +304,7 @@ chaos_LDADD = $(LDADD) + chaos_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_charge_OBJECTS = charge.$(OBJEXT) + charge_OBJECTS = $(am_charge_OBJECTS) +@@ -312,7 +312,7 @@ charge_LDADD = $(LDADD) + charge_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_checktrans_OBJECTS = checktrans.$(OBJEXT) + checktrans_OBJECTS = $(am_checktrans_OBJECTS) +@@ -320,7 +320,7 @@ checktrans_LDADD = $(LDADD) + checktrans_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_chips_OBJECTS = chips.$(OBJEXT) + chips_OBJECTS = $(am_chips_OBJECTS) +@@ -328,7 +328,7 @@ chips_LDADD = $(LDADD) + chips_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_cirdna_OBJECTS = cirdna.$(OBJEXT) + cirdna_OBJECTS = $(am_cirdna_OBJECTS) +@@ -336,7 +336,7 @@ cirdna_LDADD = $(LDADD) + cirdna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_codcmp_OBJECTS = codcmp.$(OBJEXT) + codcmp_OBJECTS = $(am_codcmp_OBJECTS) +@@ -344,7 +344,7 @@ codcmp_LDADD = $(LDADD) + codcmp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + codcopy_SOURCES = codcopy.c + codcopy_OBJECTS = codcopy.$(OBJEXT) +@@ -352,7 +352,7 @@ codcopy_LDADD = $(LDADD) + codcopy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_coderet_OBJECTS = coderet.$(OBJEXT) + coderet_OBJECTS = $(am_coderet_OBJECTS) +@@ -360,7 +360,7 @@ coderet_LDADD = $(LDADD) + coderet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_complex_OBJECTS = complex.$(OBJEXT) + complex_OBJECTS = $(am_complex_OBJECTS) +@@ -368,7 +368,7 @@ complex_LDADD = $(LDADD) + complex_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_compseq_OBJECTS = compseq.$(OBJEXT) + compseq_OBJECTS = $(am_compseq_OBJECTS) +@@ -376,7 +376,7 @@ compseq_LDADD = $(LDADD) + compseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_cons_OBJECTS = cons.$(OBJEXT) + cons_OBJECTS = $(am_cons_OBJECTS) +@@ -384,7 +384,7 @@ cons_LDADD = $(LDADD) + cons_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_consambig_OBJECTS = consambig.$(OBJEXT) + consambig_OBJECTS = $(am_consambig_OBJECTS) +@@ -392,7 +392,7 @@ consambig_LDADD = $(LDADD) + consambig_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_corbatest_OBJECTS = corbatest.$(OBJEXT) + corbatest_OBJECTS = $(am_corbatest_OBJECTS) +@@ -400,7 +400,7 @@ corbatest_LDADD = $(LDADD) + corbatest_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_cpgplot_OBJECTS = cpgplot.$(OBJEXT) + cpgplot_OBJECTS = $(am_cpgplot_OBJECTS) +@@ -408,7 +408,7 @@ cpgplot_LDADD = $(LDADD) + cpgplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_cpgreport_OBJECTS = cpgreport.$(OBJEXT) + cpgreport_OBJECTS = $(am_cpgreport_OBJECTS) +@@ -416,7 +416,7 @@ cpgreport_LDADD = $(LDADD) + cpgreport_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_cusp_OBJECTS = cusp.$(OBJEXT) + cusp_OBJECTS = $(am_cusp_OBJECTS) +@@ -424,7 +424,7 @@ cusp_LDADD = $(LDADD) + cusp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_cutgextract_OBJECTS = cutgextract.$(OBJEXT) + cutgextract_OBJECTS = $(am_cutgextract_OBJECTS) +@@ -432,7 +432,7 @@ cutgextract_LDADD = $(LDADD) + cutgextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_cutseq_OBJECTS = cutseq.$(OBJEXT) + cutseq_OBJECTS = $(am_cutseq_OBJECTS) +@@ -440,7 +440,7 @@ cutseq_LDADD = $(LDADD) + cutseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_dan_OBJECTS = dan.$(OBJEXT) + dan_OBJECTS = $(am_dan_OBJECTS) +@@ -448,7 +448,7 @@ dan_LDADD = $(LDADD) + dan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_dbiblast_OBJECTS = dbiblast.$(OBJEXT) + dbiblast_OBJECTS = $(am_dbiblast_OBJECTS) +@@ -456,7 +456,7 @@ dbiblast_LDADD = $(LDADD) + dbiblast_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_dbifasta_OBJECTS = dbifasta.$(OBJEXT) + dbifasta_OBJECTS = $(am_dbifasta_OBJECTS) +@@ -464,7 +464,7 @@ dbifasta_LDADD = $(LDADD) + dbifasta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_dbiflat_OBJECTS = dbiflat.$(OBJEXT) + dbiflat_OBJECTS = $(am_dbiflat_OBJECTS) +@@ -472,7 +472,7 @@ dbiflat_LDADD = $(LDADD) + dbiflat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_dbigcg_OBJECTS = dbigcg.$(OBJEXT) + dbigcg_OBJECTS = $(am_dbigcg_OBJECTS) +@@ -480,7 +480,7 @@ dbigcg_LDADD = $(LDADD) + dbigcg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_dbxfasta_OBJECTS = dbxfasta.$(OBJEXT) + dbxfasta_OBJECTS = $(am_dbxfasta_OBJECTS) +@@ -488,7 +488,7 @@ dbxfasta_LDADD = $(LDADD) + dbxfasta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_dbxflat_OBJECTS = dbxflat.$(OBJEXT) + dbxflat_OBJECTS = $(am_dbxflat_OBJECTS) +@@ -496,7 +496,7 @@ dbxflat_LDADD = $(LDADD) + dbxflat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_dbxgcg_OBJECTS = dbxgcg.$(OBJEXT) + dbxgcg_OBJECTS = $(am_dbxgcg_OBJECTS) +@@ -504,7 +504,7 @@ dbxgcg_LDADD = $(LDADD) + dbxgcg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_degapseq_OBJECTS = degapseq.$(OBJEXT) + degapseq_OBJECTS = $(am_degapseq_OBJECTS) +@@ -512,7 +512,7 @@ degapseq_LDADD = $(LDADD) + degapseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_density_OBJECTS = density.$(OBJEXT) + density_OBJECTS = $(am_density_OBJECTS) +@@ -520,7 +520,7 @@ density_LDADD = $(LDADD) + density_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_descseq_OBJECTS = descseq.$(OBJEXT) + descseq_OBJECTS = $(am_descseq_OBJECTS) +@@ -528,7 +528,7 @@ descseq_LDADD = $(LDADD) + descseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_diffseq_OBJECTS = diffseq.$(OBJEXT) + diffseq_OBJECTS = $(am_diffseq_OBJECTS) +@@ -536,7 +536,7 @@ diffseq_LDADD = $(LDADD) + diffseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_digest_OBJECTS = digest.$(OBJEXT) + digest_OBJECTS = $(am_digest_OBJECTS) +@@ -544,7 +544,7 @@ digest_LDADD = $(LDADD) + digest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_distmat_OBJECTS = distmat.$(OBJEXT) + distmat_OBJECTS = $(am_distmat_OBJECTS) +@@ -552,7 +552,7 @@ distmat_LDADD = $(LDADD) + distmat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + domtesta_SOURCES = domtesta.c + domtesta_OBJECTS = domtesta.$(OBJEXT) +@@ -560,7 +560,7 @@ domtesta_LDADD = $(LDADD) + domtesta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + domtestb_SOURCES = domtestb.c + domtestb_OBJECTS = domtestb.$(OBJEXT) +@@ -568,7 +568,7 @@ domtestb_LDADD = $(LDADD) + domtestb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + domtestc_SOURCES = domtestc.c + domtestc_OBJECTS = domtestc.$(OBJEXT) +@@ -576,7 +576,7 @@ domtestc_LDADD = $(LDADD) + domtestc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + domtestd_SOURCES = domtestd.c + domtestd_OBJECTS = domtestd.$(OBJEXT) +@@ -584,7 +584,7 @@ domtestd_LDADD = $(LDADD) + domtestd_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_dotmatcher_OBJECTS = dotmatcher.$(OBJEXT) + dotmatcher_OBJECTS = $(am_dotmatcher_OBJECTS) +@@ -592,7 +592,7 @@ dotmatcher_LDADD = $(LDADD) + dotmatcher_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_dotpath_OBJECTS = dotpath.$(OBJEXT) + dotpath_OBJECTS = $(am_dotpath_OBJECTS) +@@ -600,7 +600,7 @@ dotpath_LDADD = $(LDADD) + dotpath_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_dottup_OBJECTS = dottup.$(OBJEXT) + dottup_OBJECTS = $(am_dottup_OBJECTS) +@@ -608,7 +608,7 @@ dottup_LDADD = $(LDADD) + dottup_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_dreg_OBJECTS = dreg.$(OBJEXT) + dreg_OBJECTS = $(am_dreg_OBJECTS) +@@ -616,7 +616,7 @@ dreg_LDADD = $(LDADD) + dreg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_edamclean_OBJECTS = edamclean.$(OBJEXT) + edamclean_OBJECTS = $(am_edamclean_OBJECTS) +@@ -624,7 +624,7 @@ edamclean_LDADD = $(LDADD) + edamclean_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_edialign_OBJECTS = edialign.$(OBJEXT) + edialign_OBJECTS = $(am_edialign_OBJECTS) +@@ -632,7 +632,7 @@ edialign_LDADD = $(LDADD) + edialign_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_einverted_OBJECTS = einverted.$(OBJEXT) + einverted_OBJECTS = $(am_einverted_OBJECTS) +@@ -640,7 +640,7 @@ einverted_LDADD = $(LDADD) + einverted_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_embossdata_OBJECTS = embossdata.$(OBJEXT) + embossdata_OBJECTS = $(am_embossdata_OBJECTS) +@@ -648,7 +648,7 @@ embossdata_LDADD = $(LDADD) + embossdata_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_embossversion_OBJECTS = embossversion.$(OBJEXT) + embossversion_OBJECTS = $(am_embossversion_OBJECTS) +@@ -656,7 +656,7 @@ embossversion_LDADD = $(LDADD) + embossversion_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_emma_OBJECTS = emma.$(OBJEXT) + emma_OBJECTS = $(am_emma_OBJECTS) +@@ -664,7 +664,7 @@ emma_LDADD = $(LDADD) + emma_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_emowse_OBJECTS = emowse.$(OBJEXT) + emowse_OBJECTS = $(am_emowse_OBJECTS) +@@ -672,7 +672,7 @@ emowse_LDADD = $(LDADD) + emowse_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_ensembltest_OBJECTS = ensembltest.$(OBJEXT) + ensembltest_OBJECTS = $(am_ensembltest_OBJECTS) +@@ -680,7 +680,7 @@ ensembltest_LDADD = $(LDADD) + ensembltest_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_entrails_OBJECTS = entrails.$(OBJEXT) + entrails_OBJECTS = $(am_entrails_OBJECTS) +@@ -688,7 +688,7 @@ entrails_LDADD = $(LDADD) + entrails_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_entrailsbook_OBJECTS = entrailsbook.$(OBJEXT) + entrailsbook_OBJECTS = $(am_entrailsbook_OBJECTS) +@@ -696,7 +696,7 @@ entrailsbook_LDADD = $(LDADD) + entrailsbook_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_entrailshtml_OBJECTS = entrailshtml.$(OBJEXT) + entrailshtml_OBJECTS = $(am_entrailshtml_OBJECTS) +@@ -704,7 +704,7 @@ entrailshtml_LDADD = $(LDADD) + entrailshtml_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_entrailswiki_OBJECTS = entrailswiki.$(OBJEXT) + entrailswiki_OBJECTS = $(am_entrailswiki_OBJECTS) +@@ -712,7 +712,7 @@ entrailswiki_LDADD = $(LDADD) + entrailswiki_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_entret_OBJECTS = entret.$(OBJEXT) + entret_OBJECTS = $(am_entret_OBJECTS) +@@ -720,7 +720,7 @@ entret_LDADD = $(LDADD) + entret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_epestfind_OBJECTS = epestfind.$(OBJEXT) + epestfind_OBJECTS = $(am_epestfind_OBJECTS) +@@ -728,7 +728,7 @@ epestfind_LDADD = $(LDADD) + epestfind_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_eprimer3_OBJECTS = eprimer3.$(OBJEXT) + eprimer3_OBJECTS = $(am_eprimer3_OBJECTS) +@@ -736,7 +736,7 @@ eprimer3_LDADD = $(LDADD) + eprimer3_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_equicktandem_OBJECTS = equicktandem.$(OBJEXT) + equicktandem_OBJECTS = $(am_equicktandem_OBJECTS) +@@ -744,7 +744,7 @@ equicktandem_LDADD = $(LDADD) + equicktandem_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_est2genome_OBJECTS = est2genome.$(OBJEXT) + est2genome_OBJECTS = $(am_est2genome_OBJECTS) +@@ -752,7 +752,7 @@ est2genome_LDADD = $(LDADD) + est2genome_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_etandem_OBJECTS = etandem.$(OBJEXT) + etandem_OBJECTS = $(am_etandem_OBJECTS) +@@ -760,7 +760,7 @@ etandem_LDADD = $(LDADD) + etandem_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_extractalign_OBJECTS = extractalign.$(OBJEXT) + extractalign_OBJECTS = $(am_extractalign_OBJECTS) +@@ -768,7 +768,7 @@ extractalign_LDADD = $(LDADD) + extractalign_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_extractfeat_OBJECTS = extractfeat.$(OBJEXT) + extractfeat_OBJECTS = $(am_extractfeat_OBJECTS) +@@ -776,7 +776,7 @@ extractfeat_LDADD = $(LDADD) + extractfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_extractseq_OBJECTS = extractseq.$(OBJEXT) + extractseq_OBJECTS = $(am_extractseq_OBJECTS) +@@ -784,7 +784,7 @@ extractseq_LDADD = $(LDADD) + extractseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_featcopy_OBJECTS = featcopy.$(OBJEXT) + featcopy_OBJECTS = $(am_featcopy_OBJECTS) +@@ -792,7 +792,7 @@ featcopy_LDADD = $(LDADD) + featcopy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_featreport_OBJECTS = featreport.$(OBJEXT) + featreport_OBJECTS = $(am_featreport_OBJECTS) +@@ -800,7 +800,7 @@ featreport_LDADD = $(LDADD) + featreport_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_findkm_OBJECTS = findkm.$(OBJEXT) + findkm_OBJECTS = $(am_findkm_OBJECTS) +@@ -808,7 +808,7 @@ findkm_LDADD = $(LDADD) + findkm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_freak_OBJECTS = freak.$(OBJEXT) + freak_OBJECTS = $(am_freak_OBJECTS) +@@ -816,7 +816,7 @@ freak_LDADD = $(LDADD) + freak_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_fuzznuc_OBJECTS = fuzznuc.$(OBJEXT) + fuzznuc_OBJECTS = $(am_fuzznuc_OBJECTS) +@@ -824,7 +824,7 @@ fuzznuc_LDADD = $(LDADD) + fuzznuc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_fuzzpro_OBJECTS = fuzzpro.$(OBJEXT) + fuzzpro_OBJECTS = $(am_fuzzpro_OBJECTS) +@@ -832,7 +832,7 @@ fuzzpro_LDADD = $(LDADD) + fuzzpro_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_fuzztran_OBJECTS = fuzztran.$(OBJEXT) + fuzztran_OBJECTS = $(am_fuzztran_OBJECTS) +@@ -840,7 +840,7 @@ fuzztran_LDADD = $(LDADD) + fuzztran_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_garnier_OBJECTS = garnier.$(OBJEXT) + garnier_OBJECTS = $(am_garnier_OBJECTS) +@@ -848,7 +848,7 @@ garnier_LDADD = $(LDADD) + garnier_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_geecee_OBJECTS = geecee.$(OBJEXT) + geecee_OBJECTS = $(am_geecee_OBJECTS) +@@ -856,7 +856,7 @@ geecee_LDADD = $(LDADD) + geecee_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_getorf_OBJECTS = getorf.$(OBJEXT) + getorf_OBJECTS = $(am_getorf_OBJECTS) +@@ -864,7 +864,7 @@ getorf_LDADD = $(LDADD) + getorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_helixturnhelix_OBJECTS = helixturnhelix.$(OBJEXT) + helixturnhelix_OBJECTS = $(am_helixturnhelix_OBJECTS) +@@ -872,7 +872,7 @@ helixturnhelix_LDADD = $(LDADD) + helixturnhelix_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_histogramtest_OBJECTS = histogramtest.$(OBJEXT) + histogramtest_OBJECTS = $(am_histogramtest_OBJECTS) +@@ -880,7 +880,7 @@ histogramtest_LDADD = $(LDADD) + histogramtest_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_hmoment_OBJECTS = hmoment.$(OBJEXT) + hmoment_OBJECTS = $(am_hmoment_OBJECTS) +@@ -888,7 +888,7 @@ hmoment_LDADD = $(LDADD) + hmoment_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_iep_OBJECTS = iep.$(OBJEXT) + iep_OBJECTS = $(am_iep_OBJECTS) +@@ -896,7 +896,7 @@ iep_LDADD = $(LDADD) + iep_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_infoalign_OBJECTS = infoalign.$(OBJEXT) + infoalign_OBJECTS = $(am_infoalign_OBJECTS) +@@ -904,7 +904,7 @@ infoalign_LDADD = $(LDADD) + infoalign_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_infobase_OBJECTS = infobase.$(OBJEXT) + infobase_OBJECTS = $(am_infobase_OBJECTS) +@@ -912,7 +912,7 @@ infobase_LDADD = $(LDADD) + infobase_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_inforesidue_OBJECTS = inforesidue.$(OBJEXT) + inforesidue_OBJECTS = $(am_inforesidue_OBJECTS) +@@ -920,7 +920,7 @@ inforesidue_LDADD = $(LDADD) + inforesidue_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_infoseq_OBJECTS = infoseq.$(OBJEXT) + infoseq_OBJECTS = $(am_infoseq_OBJECTS) +@@ -928,7 +928,7 @@ infoseq_LDADD = $(LDADD) + infoseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_intconv_OBJECTS = intconv.$(OBJEXT) + intconv_OBJECTS = $(am_intconv_OBJECTS) +@@ -936,7 +936,7 @@ intconv_LDADD = $(LDADD) + intconv_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_isochore_OBJECTS = isochore.$(OBJEXT) + isochore_OBJECTS = $(am_isochore_OBJECTS) +@@ -944,7 +944,7 @@ isochore_LDADD = $(LDADD) + isochore_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_jaspextract_OBJECTS = jaspextract.$(OBJEXT) + jaspextract_OBJECTS = $(am_jaspextract_OBJECTS) +@@ -952,7 +952,7 @@ jaspextract_LDADD = $(LDADD) + jaspextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_jaspscan_OBJECTS = jaspscan.$(OBJEXT) + jaspscan_OBJECTS = $(am_jaspscan_OBJECTS) +@@ -960,7 +960,7 @@ jaspscan_LDADD = $(LDADD) + jaspscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_jembossctl_OBJECTS = jembossctl.$(OBJEXT) + jembossctl_OBJECTS = $(am_jembossctl_OBJECTS) +@@ -968,7 +968,7 @@ jembossctl_LDADD = $(LDADD) + jembossctl_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_lindna_OBJECTS = lindna.$(OBJEXT) + lindna_OBJECTS = $(am_lindna_OBJECTS) +@@ -976,7 +976,7 @@ lindna_LDADD = $(LDADD) + lindna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_listor_OBJECTS = listor.$(OBJEXT) + listor_OBJECTS = $(am_listor_OBJECTS) +@@ -984,7 +984,7 @@ listor_LDADD = $(LDADD) + listor_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + makenucseq_SOURCES = makenucseq.c + makenucseq_OBJECTS = makenucseq.$(OBJEXT) +@@ -992,7 +992,7 @@ makenucseq_LDADD = $(LDADD) + makenucseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + makeprotseq_SOURCES = makeprotseq.c + makeprotseq_OBJECTS = makeprotseq.$(OBJEXT) +@@ -1000,7 +1000,7 @@ makeprotseq_LDADD = $(LDADD) + makeprotseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_marscan_OBJECTS = marscan.$(OBJEXT) + marscan_OBJECTS = $(am_marscan_OBJECTS) +@@ -1008,7 +1008,7 @@ marscan_LDADD = $(LDADD) + marscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_martattributes_OBJECTS = martattributes.$(OBJEXT) + martattributes_OBJECTS = $(am_martattributes_OBJECTS) +@@ -1016,7 +1016,7 @@ martattributes_LDADD = $(LDADD) + martattributes_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_martdatasets_OBJECTS = martdatasets.$(OBJEXT) + martdatasets_OBJECTS = $(am_martdatasets_OBJECTS) +@@ -1024,7 +1024,7 @@ martdatasets_LDADD = $(LDADD) + martdatasets_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_martfilters_OBJECTS = martfilters.$(OBJEXT) + martfilters_OBJECTS = $(am_martfilters_OBJECTS) +@@ -1032,7 +1032,7 @@ martfilters_LDADD = $(LDADD) + martfilters_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_martquery_OBJECTS = martquery.$(OBJEXT) + martquery_OBJECTS = $(am_martquery_OBJECTS) +@@ -1040,7 +1040,7 @@ martquery_LDADD = $(LDADD) + martquery_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_martregistry_OBJECTS = martregistry.$(OBJEXT) + martregistry_OBJECTS = $(am_martregistry_OBJECTS) +@@ -1048,7 +1048,7 @@ martregistry_LDADD = $(LDADD) + martregistry_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_martseqs_OBJECTS = martseqs.$(OBJEXT) + martseqs_OBJECTS = $(am_martseqs_OBJECTS) +@@ -1056,7 +1056,7 @@ martseqs_LDADD = $(LDADD) + martseqs_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_maskambignuc_OBJECTS = maskambignuc.$(OBJEXT) + maskambignuc_OBJECTS = $(am_maskambignuc_OBJECTS) +@@ -1064,7 +1064,7 @@ maskambignuc_LDADD = $(LDADD) + maskambignuc_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_maskambigprot_OBJECTS = maskambigprot.$(OBJEXT) + maskambigprot_OBJECTS = $(am_maskambigprot_OBJECTS) +@@ -1072,7 +1072,7 @@ maskambigprot_LDADD = $(LDADD) + maskambigprot_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_maskfeat_OBJECTS = maskfeat.$(OBJEXT) + maskfeat_OBJECTS = $(am_maskfeat_OBJECTS) +@@ -1080,7 +1080,7 @@ maskfeat_LDADD = $(LDADD) + maskfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_maskseq_OBJECTS = maskseq.$(OBJEXT) + maskseq_OBJECTS = $(am_maskseq_OBJECTS) +@@ -1088,7 +1088,7 @@ maskseq_LDADD = $(LDADD) + maskseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_matcher_OBJECTS = matcher.$(OBJEXT) + matcher_OBJECTS = $(am_matcher_OBJECTS) +@@ -1096,7 +1096,7 @@ matcher_LDADD = $(LDADD) + matcher_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_megamerger_OBJECTS = megamerger.$(OBJEXT) + megamerger_OBJECTS = $(am_megamerger_OBJECTS) +@@ -1104,7 +1104,7 @@ megamerger_LDADD = $(LDADD) + megamerger_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_merger_OBJECTS = merger.$(OBJEXT) + merger_OBJECTS = $(am_merger_OBJECTS) +@@ -1112,7 +1112,7 @@ merger_LDADD = $(LDADD) + merger_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_msbar_OBJECTS = msbar.$(OBJEXT) + msbar_OBJECTS = $(am_msbar_OBJECTS) +@@ -1120,7 +1120,7 @@ msbar_LDADD = $(LDADD) + msbar_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_mwcontam_OBJECTS = mwcontam.$(OBJEXT) + mwcontam_OBJECTS = $(am_mwcontam_OBJECTS) +@@ -1128,7 +1128,7 @@ mwcontam_LDADD = $(LDADD) + mwcontam_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_mwfilter_OBJECTS = mwfilter.$(OBJEXT) + mwfilter_OBJECTS = $(am_mwfilter_OBJECTS) +@@ -1136,7 +1136,7 @@ mwfilter_LDADD = $(LDADD) + mwfilter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_needle_OBJECTS = needle.$(OBJEXT) + needle_OBJECTS = $(am_needle_OBJECTS) +@@ -1144,7 +1144,7 @@ needle_LDADD = $(LDADD) + needle_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_needleall_OBJECTS = needleall.$(OBJEXT) + needleall_OBJECTS = $(am_needleall_OBJECTS) +@@ -1152,7 +1152,7 @@ needleall_LDADD = $(LDADD) + needleall_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_newcoils_OBJECTS = newcoils.$(OBJEXT) + newcoils_OBJECTS = $(am_newcoils_OBJECTS) +@@ -1160,7 +1160,7 @@ newcoils_LDADD = $(LDADD) + newcoils_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_newcpgreport_OBJECTS = newcpgreport.$(OBJEXT) + newcpgreport_OBJECTS = $(am_newcpgreport_OBJECTS) +@@ -1168,7 +1168,7 @@ newcpgreport_LDADD = $(LDADD) + newcpgreport_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_newcpgseek_OBJECTS = newcpgseek.$(OBJEXT) + newcpgseek_OBJECTS = $(am_newcpgseek_OBJECTS) +@@ -1176,7 +1176,7 @@ newcpgseek_LDADD = $(LDADD) + newcpgseek_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_newseq_OBJECTS = newseq.$(OBJEXT) + newseq_OBJECTS = $(am_newseq_OBJECTS) +@@ -1184,7 +1184,7 @@ newseq_LDADD = $(LDADD) + newseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_nohtml_OBJECTS = nohtml.$(OBJEXT) + nohtml_OBJECTS = $(am_nohtml_OBJECTS) +@@ -1192,7 +1192,7 @@ nohtml_LDADD = $(LDADD) + nohtml_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_noreturn_OBJECTS = noreturn.$(OBJEXT) + noreturn_OBJECTS = $(am_noreturn_OBJECTS) +@@ -1200,7 +1200,7 @@ noreturn_LDADD = $(LDADD) + noreturn_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_nospace_OBJECTS = nospace.$(OBJEXT) + nospace_OBJECTS = $(am_nospace_OBJECTS) +@@ -1208,7 +1208,7 @@ nospace_LDADD = $(LDADD) + nospace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_notab_OBJECTS = notab.$(OBJEXT) + notab_OBJECTS = $(am_notab_OBJECTS) +@@ -1216,7 +1216,7 @@ notab_LDADD = $(LDADD) + notab_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_notseq_OBJECTS = notseq.$(OBJEXT) + notseq_OBJECTS = $(am_notseq_OBJECTS) +@@ -1224,7 +1224,7 @@ notseq_LDADD = $(LDADD) + notseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_nthseq_OBJECTS = nthseq.$(OBJEXT) + nthseq_OBJECTS = $(am_nthseq_OBJECTS) +@@ -1232,7 +1232,7 @@ nthseq_LDADD = $(LDADD) + nthseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_nthseqset_OBJECTS = nthseqset.$(OBJEXT) + nthseqset_OBJECTS = $(am_nthseqset_OBJECTS) +@@ -1240,7 +1240,7 @@ nthseqset_LDADD = $(LDADD) + nthseqset_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_octanol_OBJECTS = octanol.$(OBJEXT) + octanol_OBJECTS = $(am_octanol_OBJECTS) +@@ -1248,7 +1248,7 @@ octanol_LDADD = $(LDADD) + octanol_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_oddcomp_OBJECTS = oddcomp.$(OBJEXT) + oddcomp_OBJECTS = $(am_oddcomp_OBJECTS) +@@ -1256,7 +1256,7 @@ oddcomp_LDADD = $(LDADD) + oddcomp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_origsplitter_OBJECTS = origsplitter.$(OBJEXT) + origsplitter_OBJECTS = $(am_origsplitter_OBJECTS) +@@ -1264,7 +1264,7 @@ origsplitter_LDADD = $(LDADD) + origsplitter_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_origunion_OBJECTS = origunion.$(OBJEXT) + origunion_OBJECTS = $(am_origunion_OBJECTS) +@@ -1272,7 +1272,7 @@ origunion_LDADD = $(LDADD) + origunion_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_palindrome_OBJECTS = palindrome.$(OBJEXT) + palindrome_OBJECTS = $(am_palindrome_OBJECTS) +@@ -1280,7 +1280,7 @@ palindrome_LDADD = $(LDADD) + palindrome_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_pasteseq_OBJECTS = pasteseq.$(OBJEXT) + pasteseq_OBJECTS = $(am_pasteseq_OBJECTS) +@@ -1288,7 +1288,7 @@ pasteseq_LDADD = $(LDADD) + pasteseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_patmatdb_OBJECTS = patmatdb.$(OBJEXT) + patmatdb_OBJECTS = $(am_patmatdb_OBJECTS) +@@ -1296,7 +1296,7 @@ patmatdb_LDADD = $(LDADD) + patmatdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_patmatmotifs_OBJECTS = patmatmotifs.$(OBJEXT) + patmatmotifs_OBJECTS = $(am_patmatmotifs_OBJECTS) +@@ -1304,7 +1304,7 @@ patmatmotifs_LDADD = $(LDADD) + patmatmotifs_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_patmattest_OBJECTS = patmattest.$(OBJEXT) + patmattest_OBJECTS = $(am_patmattest_OBJECTS) +@@ -1312,7 +1312,7 @@ patmattest_LDADD = $(LDADD) + patmattest_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_pepcoil_OBJECTS = pepcoil.$(OBJEXT) + pepcoil_OBJECTS = $(am_pepcoil_OBJECTS) +@@ -1320,7 +1320,7 @@ pepcoil_LDADD = $(LDADD) + pepcoil_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_pepinfo_OBJECTS = pepinfo.$(OBJEXT) + pepinfo_OBJECTS = $(am_pepinfo_OBJECTS) +@@ -1328,7 +1328,7 @@ pepinfo_LDADD = $(LDADD) + pepinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_pepnet_OBJECTS = pepnet.$(OBJEXT) + pepnet_OBJECTS = $(am_pepnet_OBJECTS) +@@ -1336,7 +1336,7 @@ pepnet_LDADD = $(LDADD) + pepnet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_pepstats_OBJECTS = pepstats.$(OBJEXT) + pepstats_OBJECTS = $(am_pepstats_OBJECTS) +@@ -1344,7 +1344,7 @@ pepstats_LDADD = $(LDADD) + pepstats_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_pepwheel_OBJECTS = pepwheel.$(OBJEXT) + pepwheel_OBJECTS = $(am_pepwheel_OBJECTS) +@@ -1352,7 +1352,7 @@ pepwheel_LDADD = $(LDADD) + pepwheel_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_pepwindow_OBJECTS = pepwindow.$(OBJEXT) + pepwindow_OBJECTS = $(am_pepwindow_OBJECTS) +@@ -1360,7 +1360,7 @@ pepwindow_LDADD = $(LDADD) + pepwindow_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_pepwindowall_OBJECTS = pepwindowall.$(OBJEXT) + pepwindowall_OBJECTS = $(am_pepwindowall_OBJECTS) +@@ -1368,7 +1368,7 @@ pepwindowall_LDADD = $(LDADD) + pepwindowall_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_plotcon_OBJECTS = plotcon.$(OBJEXT) + plotcon_OBJECTS = $(am_plotcon_OBJECTS) +@@ -1376,7 +1376,7 @@ plotcon_LDADD = $(LDADD) + plotcon_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_plotorf_OBJECTS = plotorf.$(OBJEXT) + plotorf_OBJECTS = $(am_plotorf_OBJECTS) +@@ -1384,7 +1384,7 @@ plotorf_LDADD = $(LDADD) + plotorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_polydot_OBJECTS = polydot.$(OBJEXT) + polydot_OBJECTS = $(am_polydot_OBJECTS) +@@ -1392,7 +1392,7 @@ polydot_LDADD = $(LDADD) + polydot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_preg_OBJECTS = preg.$(OBJEXT) + preg_OBJECTS = $(am_preg_OBJECTS) +@@ -1400,7 +1400,7 @@ preg_LDADD = $(LDADD) + preg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_prettyplot_OBJECTS = prettyplot.$(OBJEXT) + prettyplot_OBJECTS = $(am_prettyplot_OBJECTS) +@@ -1408,7 +1408,7 @@ prettyplot_LDADD = $(LDADD) + prettyplot_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_prettyseq_OBJECTS = prettyseq.$(OBJEXT) + prettyseq_OBJECTS = $(am_prettyseq_OBJECTS) +@@ -1416,7 +1416,7 @@ prettyseq_LDADD = $(LDADD) + prettyseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_prima_OBJECTS = prima.$(OBJEXT) + prima_OBJECTS = $(am_prima_OBJECTS) +@@ -1424,7 +1424,7 @@ prima_LDADD = $(LDADD) + prima_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_primers_OBJECTS = primers.$(OBJEXT) + primers_OBJECTS = $(am_primers_OBJECTS) +@@ -1432,7 +1432,7 @@ primers_LDADD = $(LDADD) + primers_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_primersearch_OBJECTS = primersearch.$(OBJEXT) + primersearch_OBJECTS = $(am_primersearch_OBJECTS) +@@ -1440,7 +1440,7 @@ primersearch_LDADD = $(LDADD) + primersearch_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_printsextract_OBJECTS = printsextract.$(OBJEXT) + printsextract_OBJECTS = $(am_printsextract_OBJECTS) +@@ -1448,7 +1448,7 @@ printsextract_LDADD = $(LDADD) + printsextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_profit_OBJECTS = profit.$(OBJEXT) + profit_OBJECTS = $(am_profit_OBJECTS) +@@ -1456,7 +1456,7 @@ profit_LDADD = $(LDADD) + profit_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_prophecy_OBJECTS = prophecy.$(OBJEXT) + prophecy_OBJECTS = $(am_prophecy_OBJECTS) +@@ -1464,7 +1464,7 @@ prophecy_LDADD = $(LDADD) + prophecy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_prophet_OBJECTS = prophet.$(OBJEXT) + prophet_OBJECTS = $(am_prophet_OBJECTS) +@@ -1472,7 +1472,7 @@ prophet_LDADD = $(LDADD) + prophet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_prosextract_OBJECTS = prosextract.$(OBJEXT) + prosextract_OBJECTS = $(am_prosextract_OBJECTS) +@@ -1480,7 +1480,7 @@ prosextract_LDADD = $(LDADD) + prosextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_pscan_OBJECTS = pscan.$(OBJEXT) + pscan_OBJECTS = $(am_pscan_OBJECTS) +@@ -1488,7 +1488,7 @@ pscan_LDADD = $(LDADD) + pscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_psiphi_OBJECTS = psiphi.$(OBJEXT) + psiphi_OBJECTS = $(am_psiphi_OBJECTS) +@@ -1496,7 +1496,7 @@ psiphi_LDADD = $(LDADD) + psiphi_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_rebaseextract_OBJECTS = rebaseextract.$(OBJEXT) + rebaseextract_OBJECTS = $(am_rebaseextract_OBJECTS) +@@ -1504,7 +1504,7 @@ rebaseextract_LDADD = $(LDADD) + rebaseextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_recoder_OBJECTS = recoder.$(OBJEXT) + recoder_OBJECTS = $(am_recoder_OBJECTS) +@@ -1512,7 +1512,7 @@ recoder_LDADD = $(LDADD) + recoder_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_redata_OBJECTS = redata.$(OBJEXT) + redata_OBJECTS = $(am_redata_OBJECTS) +@@ -1520,7 +1520,7 @@ redata_LDADD = $(LDADD) + redata_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_remap_OBJECTS = remap.$(OBJEXT) + remap_OBJECTS = $(am_remap_OBJECTS) +@@ -1528,7 +1528,7 @@ remap_LDADD = $(LDADD) + remap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_restover_OBJECTS = restover.$(OBJEXT) + restover_OBJECTS = $(am_restover_OBJECTS) +@@ -1536,7 +1536,7 @@ restover_LDADD = $(LDADD) + restover_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_restrict_OBJECTS = restrict.$(OBJEXT) + restrict_OBJECTS = $(am_restrict_OBJECTS) +@@ -1544,7 +1544,7 @@ restrict_LDADD = $(LDADD) + restrict_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_revseq_OBJECTS = revseq.$(OBJEXT) + revseq_OBJECTS = $(am_revseq_OBJECTS) +@@ -1552,7 +1552,7 @@ revseq_LDADD = $(LDADD) + revseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_seealso_OBJECTS = seealso.$(OBJEXT) + seealso_OBJECTS = $(am_seealso_OBJECTS) +@@ -1560,7 +1560,7 @@ seealso_LDADD = $(LDADD) + seealso_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_seqinfo_OBJECTS = seqinfo.$(OBJEXT) + seqinfo_OBJECTS = $(am_seqinfo_OBJECTS) +@@ -1568,7 +1568,7 @@ seqinfo_LDADD = $(LDADD) + seqinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_seqmatchall_OBJECTS = seqmatchall.$(OBJEXT) + seqmatchall_OBJECTS = $(am_seqmatchall_OBJECTS) +@@ -1576,7 +1576,7 @@ seqmatchall_LDADD = $(LDADD) + seqmatchall_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_seqret_OBJECTS = seqret.$(OBJEXT) + seqret_OBJECTS = $(am_seqret_OBJECTS) +@@ -1584,7 +1584,7 @@ seqret_LDADD = $(LDADD) + seqret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_seqretall_OBJECTS = seqretall.$(OBJEXT) + seqretall_OBJECTS = $(am_seqretall_OBJECTS) +@@ -1592,7 +1592,7 @@ seqretall_LDADD = $(LDADD) + seqretall_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_seqretallfeat_OBJECTS = seqretallfeat.$(OBJEXT) + seqretallfeat_OBJECTS = $(am_seqretallfeat_OBJECTS) +@@ -1600,7 +1600,7 @@ seqretallfeat_LDADD = $(LDADD) + seqretallfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_seqretset_OBJECTS = seqretset.$(OBJEXT) + seqretset_OBJECTS = $(am_seqretset_OBJECTS) +@@ -1608,7 +1608,7 @@ seqretset_LDADD = $(LDADD) + seqretset_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_seqretsetall_OBJECTS = seqretsetall.$(OBJEXT) + seqretsetall_OBJECTS = $(am_seqretsetall_OBJECTS) +@@ -1616,7 +1616,7 @@ seqretsetall_LDADD = $(LDADD) + seqretsetall_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_seqretsingle_OBJECTS = seqretsingle.$(OBJEXT) + seqretsingle_OBJECTS = $(am_seqretsingle_OBJECTS) +@@ -1624,7 +1624,7 @@ seqretsingle_LDADD = $(LDADD) + seqretsingle_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_seqretsplit_OBJECTS = seqretsplit.$(OBJEXT) + seqretsplit_OBJECTS = $(am_seqretsplit_OBJECTS) +@@ -1632,7 +1632,7 @@ seqretsplit_LDADD = $(LDADD) + seqretsplit_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_seqrettype_OBJECTS = seqrettype.$(OBJEXT) + seqrettype_OBJECTS = $(am_seqrettype_OBJECTS) +@@ -1640,7 +1640,7 @@ seqrettype_LDADD = $(LDADD) + seqrettype_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_showalign_OBJECTS = showalign.$(OBJEXT) + showalign_OBJECTS = $(am_showalign_OBJECTS) +@@ -1648,7 +1648,7 @@ showalign_LDADD = $(LDADD) + showalign_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_showdb_OBJECTS = showdb.$(OBJEXT) + showdb_OBJECTS = $(am_showdb_OBJECTS) +@@ -1656,7 +1656,7 @@ showdb_LDADD = $(LDADD) + showdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_showfeat_OBJECTS = showfeat.$(OBJEXT) + showfeat_OBJECTS = $(am_showfeat_OBJECTS) +@@ -1664,7 +1664,7 @@ showfeat_LDADD = $(LDADD) + showfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_showorf_OBJECTS = showorf.$(OBJEXT) + showorf_OBJECTS = $(am_showorf_OBJECTS) +@@ -1672,7 +1672,7 @@ showorf_LDADD = $(LDADD) + showorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_showpep_OBJECTS = showpep.$(OBJEXT) + showpep_OBJECTS = $(am_showpep_OBJECTS) +@@ -1680,7 +1680,7 @@ showpep_LDADD = $(LDADD) + showpep_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_showseq_OBJECTS = showseq.$(OBJEXT) + showseq_OBJECTS = $(am_showseq_OBJECTS) +@@ -1688,7 +1688,7 @@ showseq_LDADD = $(LDADD) + showseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_shuffleseq_OBJECTS = shuffleseq.$(OBJEXT) + shuffleseq_OBJECTS = $(am_shuffleseq_OBJECTS) +@@ -1696,7 +1696,7 @@ shuffleseq_LDADD = $(LDADD) + shuffleseq_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_sigcleave_OBJECTS = sigcleave.$(OBJEXT) + sigcleave_OBJECTS = $(am_sigcleave_OBJECTS) +@@ -1704,7 +1704,7 @@ sigcleave_LDADD = $(LDADD) + sigcleave_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_silent_OBJECTS = silent.$(OBJEXT) + silent_OBJECTS = $(am_silent_OBJECTS) +@@ -1712,7 +1712,7 @@ silent_LDADD = $(LDADD) + silent_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_sirna_OBJECTS = sirna.$(OBJEXT) + sirna_OBJECTS = $(am_sirna_OBJECTS) +@@ -1720,7 +1720,7 @@ sirna_LDADD = $(LDADD) + sirna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_sixpack_OBJECTS = sixpack.$(OBJEXT) + sixpack_OBJECTS = $(am_sixpack_OBJECTS) +@@ -1728,7 +1728,7 @@ sixpack_LDADD = $(LDADD) + sixpack_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_sizeseq_OBJECTS = sizeseq.$(OBJEXT) + sizeseq_OBJECTS = $(am_sizeseq_OBJECTS) +@@ -1736,7 +1736,7 @@ sizeseq_LDADD = $(LDADD) + sizeseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_skipredundant_OBJECTS = skipredundant.$(OBJEXT) + skipredundant_OBJECTS = $(am_skipredundant_OBJECTS) +@@ -1744,7 +1744,7 @@ skipredundant_LDADD = $(LDADD) + skipredundant_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_skipseq_OBJECTS = skipseq.$(OBJEXT) + skipseq_OBJECTS = $(am_skipseq_OBJECTS) +@@ -1752,7 +1752,7 @@ skipseq_LDADD = $(LDADD) + skipseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + splitsource_SOURCES = splitsource.c + splitsource_OBJECTS = splitsource.$(OBJEXT) +@@ -1760,7 +1760,7 @@ splitsource_LDADD = $(LDADD) + splitsource_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_splitter_OBJECTS = splitter.$(OBJEXT) + splitter_OBJECTS = $(am_splitter_OBJECTS) +@@ -1768,7 +1768,7 @@ splitter_LDADD = $(LDADD) + splitter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_sqltest_OBJECTS = sqltest.$(OBJEXT) + sqltest_OBJECTS = $(am_sqltest_OBJECTS) +@@ -1776,7 +1776,7 @@ sqltest_LDADD = $(LDADD) + sqltest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_stretcher_OBJECTS = stretcher.$(OBJEXT) + stretcher_OBJECTS = $(am_stretcher_OBJECTS) +@@ -1784,7 +1784,7 @@ stretcher_LDADD = $(LDADD) + stretcher_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_stssearch_OBJECTS = stssearch.$(OBJEXT) + stssearch_OBJECTS = $(am_stssearch_OBJECTS) +@@ -1792,7 +1792,7 @@ stssearch_LDADD = $(LDADD) + stssearch_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_supermatcher_OBJECTS = supermatcher.$(OBJEXT) + supermatcher_OBJECTS = $(am_supermatcher_OBJECTS) +@@ -1800,7 +1800,7 @@ supermatcher_LDADD = $(LDADD) + supermatcher_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_syco_OBJECTS = syco.$(OBJEXT) + syco_OBJECTS = $(am_syco_OBJECTS) +@@ -1808,7 +1808,7 @@ syco_LDADD = $(LDADD) + syco_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_tcode_OBJECTS = tcode.$(OBJEXT) + tcode_OBJECTS = $(am_tcode_OBJECTS) +@@ -1816,7 +1816,7 @@ tcode_LDADD = $(LDADD) + tcode_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_testplot_OBJECTS = testplot.$(OBJEXT) + testplot_OBJECTS = $(am_testplot_OBJECTS) +@@ -1824,7 +1824,7 @@ testplot_LDADD = $(LDADD) + testplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_textsearch_OBJECTS = textsearch.$(OBJEXT) + textsearch_OBJECTS = $(am_textsearch_OBJECTS) +@@ -1832,7 +1832,7 @@ textsearch_LDADD = $(LDADD) + textsearch_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_tfextract_OBJECTS = tfextract.$(OBJEXT) + tfextract_OBJECTS = $(am_tfextract_OBJECTS) +@@ -1840,7 +1840,7 @@ tfextract_LDADD = $(LDADD) + tfextract_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_tfm_OBJECTS = tfm.$(OBJEXT) + tfm_OBJECTS = $(am_tfm_OBJECTS) +@@ -1848,7 +1848,7 @@ tfm_LDADD = $(LDADD) + tfm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_tfscan_OBJECTS = tfscan.$(OBJEXT) + tfscan_OBJECTS = $(am_tfscan_OBJECTS) +@@ -1856,7 +1856,7 @@ tfscan_LDADD = $(LDADD) + tfscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_tmap_OBJECTS = tmap.$(OBJEXT) + tmap_OBJECTS = $(am_tmap_OBJECTS) +@@ -1864,7 +1864,7 @@ tmap_LDADD = $(LDADD) + tmap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_tranalign_OBJECTS = tranalign.$(OBJEXT) + tranalign_OBJECTS = $(am_tranalign_OBJECTS) +@@ -1872,7 +1872,7 @@ tranalign_LDADD = $(LDADD) + tranalign_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_transeq_OBJECTS = transeq.$(OBJEXT) + transeq_OBJECTS = $(am_transeq_OBJECTS) +@@ -1880,7 +1880,7 @@ transeq_LDADD = $(LDADD) + transeq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_treetypedisplay_OBJECTS = treetypedisplay.$(OBJEXT) + treetypedisplay_OBJECTS = $(am_treetypedisplay_OBJECTS) +@@ -1888,7 +1888,7 @@ treetypedisplay_LDADD = $(LDADD) + treetypedisplay_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_trimest_OBJECTS = trimest.$(OBJEXT) + trimest_OBJECTS = $(am_trimest_OBJECTS) +@@ -1896,7 +1896,7 @@ trimest_LDADD = $(LDADD) + trimest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_trimseq_OBJECTS = trimseq.$(OBJEXT) + trimseq_OBJECTS = $(am_trimseq_OBJECTS) +@@ -1904,7 +1904,7 @@ trimseq_LDADD = $(LDADD) + trimseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_trimspace_OBJECTS = trimspace.$(OBJEXT) + trimspace_OBJECTS = $(am_trimspace_OBJECTS) +@@ -1912,7 +1912,7 @@ trimspace_LDADD = $(LDADD) + trimspace_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_twofeat_OBJECTS = twofeat.$(OBJEXT) + twofeat_OBJECTS = $(am_twofeat_OBJECTS) +@@ -1920,7 +1920,7 @@ twofeat_LDADD = $(LDADD) + twofeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_union_OBJECTS = union.$(OBJEXT) + union_OBJECTS = $(am_union_OBJECTS) +@@ -1928,7 +1928,7 @@ union_LDADD = $(LDADD) + union_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_vectorstrip_OBJECTS = vectorstrip.$(OBJEXT) + vectorstrip_OBJECTS = $(am_vectorstrip_OBJECTS) +@@ -1936,7 +1936,7 @@ vectorstrip_LDADD = $(LDADD) + vectorstrip_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_water_OBJECTS = water.$(OBJEXT) + water_OBJECTS = $(am_water_OBJECTS) +@@ -1944,7 +1944,7 @@ water_LDADD = $(LDADD) + water_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_whichdb_OBJECTS = whichdb.$(OBJEXT) + whichdb_OBJECTS = $(am_whichdb_OBJECTS) +@@ -1952,7 +1952,7 @@ whichdb_LDADD = $(LDADD) + whichdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_wobble_OBJECTS = wobble.$(OBJEXT) + wobble_OBJECTS = $(am_wobble_OBJECTS) +@@ -1960,7 +1960,7 @@ wobble_LDADD = $(LDADD) + wobble_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_wordcount_OBJECTS = wordcount.$(OBJEXT) + wordcount_OBJECTS = $(am_wordcount_OBJECTS) +@@ -1968,7 +1968,7 @@ wordcount_LDADD = $(LDADD) + wordcount_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_wordfinder_OBJECTS = wordfinder.$(OBJEXT) + wordfinder_OBJECTS = $(am_wordfinder_OBJECTS) +@@ -1976,7 +1976,7 @@ wordfinder_LDADD = $(LDADD) + wordfinder_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_wordmatch_OBJECTS = wordmatch.$(OBJEXT) + wordmatch_OBJECTS = $(am_wordmatch_OBJECTS) +@@ -1984,7 +1984,7 @@ wordmatch_LDADD = $(LDADD) + wordmatch_DEPENDENCIES = ../nucleus/libnucleus.la \ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ +- ../ajax/core/libajax.la $(EXTRA_LDS) ../ajax/pcre/libepcre.la \ ++ ../ajax/core/libajax.la $(EXTRA_LDS) \ + ../plplot/libeplplot.la $(am__DEPENDENCIES_1) + am_wossname_OBJECTS = wossname.$(OBJEXT) + wossname_OBJECTS = $(am_wossname_OBJECTS) +@@ -1992,7 +1992,7 @@ wossname_LDADD = $(LDADD) + wossname_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + am_yank_OBJECTS = yank.$(OBJEXT) + yank_OBJECTS = $(am_yank_OBJECTS) +@@ -2000,7 +2000,7 @@ yank_LDADD = $(LDADD) + yank_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) ../plplot/libeplplot.la \ + $(am__DEPENDENCIES_1) + DEFAULT_INCLUDES = -I.@am__isrc@ + depcomp = $(SHELL) $(top_srcdir)/depcomp +@@ -2284,8 +2284,6 @@ ESYSTEMLIBS = @ESYSTEMLIBS@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ +-HAVE_MEMMOVE = @HAVE_MEMMOVE@ +-HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +@@ -2412,8 +2410,8 @@ EXTRA_DIST = emboss.default.template + @ISAIXIA64_TRUE@@ISSHARED_TRUE@ -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre -lezlib + + AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS) $(DEVWARN_CFLAGS) +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib +-INCLUDES = -I$(top_srcdir)/nucleus -I$(top_srcdir)/ajax/pcre \ ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre ++INCLUDES = -I$(top_srcdir)/nucleus \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ + -I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \ +@@ -2645,12 +2643,12 @@ seqrettype_SOURCES = seqrettype.c + sqltest_SOURCES = sqltest.c + testplot_SOURCES = testplot.c + treetypedisplay_SOURCES = treetypedisplay.c +-@ESYSTEMLIBS_FALSE@EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ++@ESYSTEMLIBS_FALSE@EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la + LDADD = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ + $(EXTRA_LDS) \ +- ../ajax/pcre/libepcre.la ../plplot/libeplplot.la \ ++ ../plplot/libeplplot.la \ + $(XLIB) + + pkgdata_DATA = emboss.default.template +@@ -2667,9 +2665,9 @@ $(srcdir)/Makefile.in: $(srcdir)/Makefi + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu emboss/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits emboss/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu emboss/Makefile ++ $(AUTOMAKE) --gnits emboss/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ +@@ -2732,6 +2730,22 @@ clean-binPROGRAMS: + echo " rm -f" $$list; \ + rm -f $$list + ++installcheck-binPROGRAMS: $(bin_PROGRAMS) ++ bad=0; pid=$$$$; list="$(bin_PROGRAMS)"; for p in $$list; do \ ++ case ' $(AM_INSTALLCHECK_STD_OPTIONS_EXEMPT) ' in \ ++ *" $$p "* | *" $(srcdir)/$$p "*) continue;; \ ++ esac; \ ++ f=`echo "$$p" | \ ++ sed 's,^.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/'`; \ ++ for opt in --help --version; do \ ++ if "$(DESTDIR)$(bindir)/$$f" $$opt >c$${pid}_.out \ ++ 2>c$${pid}_.err &2; bad=1; fi; \ ++ done; \ ++ done; rm -f c$${pid}_.???; exit $$bad ++ + clean-checkPROGRAMS: + @list='$(check_PROGRAMS)'; test -n "$$list" || exit 0; \ + echo " rm -f" $$list; \ +@@ -4007,7 +4021,7 @@ install-ps: install-ps-recursive + + install-ps-am: + +-installcheck-am: ++installcheck-am: installcheck-binPROGRAMS + + maintainer-clean: maintainer-clean-recursive + -rm -rf ./$(DEPDIR) +@@ -4042,12 +4056,12 @@ uninstall-am: uninstall-binPROGRAMS unin + install-exec install-exec-am install-html install-html-am \ + install-info install-info-am install-man install-pdf \ + install-pdf-am install-pkgdataDATA install-ps install-ps-am \ +- install-strip installcheck installcheck-am installdirs \ +- installdirs-am maintainer-clean maintainer-clean-generic \ +- mostlyclean mostlyclean-compile mostlyclean-generic \ +- mostlyclean-libtool pdf pdf-am ps ps-am tags tags-recursive \ +- uninstall uninstall-am uninstall-binPROGRAMS \ +- uninstall-pkgdataDATA ++ install-strip installcheck installcheck-am \ ++ installcheck-binPROGRAMS installdirs installdirs-am \ ++ maintainer-clean maintainer-clean-generic mostlyclean \ ++ mostlyclean-compile mostlyclean-generic mostlyclean-libtool \ ++ pdf pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \ ++ uninstall-binPROGRAMS uninstall-pkgdataDATA + + + #if PURIFY +diff -up EMBOSS-6.3.1/nucleus/Makefile.am.system-pcre EMBOSS-6.3.1/nucleus/Makefile.am +--- EMBOSS-6.3.1/nucleus/Makefile.am.system-pcre 2010-06-16 07:36:00.000000000 -0400 ++++ EMBOSS-6.3.1/nucleus/Makefile.am 2010-08-02 16:21:49.942306124 -0400 +@@ -19,13 +19,13 @@ CYGWIN_LIBS = -L../plplot -L../ajax/pcre + -lezlib -leplplot + else + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre + endif + endif + + + INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \ +- -I$(top_srcdir)/ajax -I$(top_srcdir)/ajax/pcre \ ++ -I$(top_srcdir)/ajax \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ + -I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \ +diff -up EMBOSS-6.3.1/nucleus/Makefile.in.system-pcre EMBOSS-6.3.1/nucleus/Makefile.in +--- EMBOSS-6.3.1/nucleus/Makefile.in.system-pcre 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/nucleus/Makefile.in 2010-08-02 16:22:34.280145171 -0400 +@@ -134,8 +134,6 @@ ESYSTEMLIBS = @ESYSTEMLIBS@ + EXEEXT = @EXEEXT@ + FGREP = @FGREP@ + GREP = @GREP@ +-HAVE_MEMMOVE = @HAVE_MEMMOVE@ +-HAVE_STRERROR = @HAVE_STRERROR@ + INSTALL = @INSTALL@ + INSTALL_DATA = @INSTALL_DATA@ + INSTALL_PROGRAM = @INSTALL_PROGRAM@ +@@ -264,9 +262,9 @@ AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS) + @ISCYGWIN_TRUE@-L../ajax/acd -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre \ + @ISCYGWIN_TRUE@-lezlib -leplplot + +-@ESYSTEMLIBS_FALSE@@ISCYGWIN_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib ++@ESYSTEMLIBS_FALSE@@ISCYGWIN_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre + INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \ +- -I$(top_srcdir)/ajax -I$(top_srcdir)/ajax/pcre \ ++ -I$(top_srcdir)/ajax \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ + -I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \ +@@ -303,9 +301,9 @@ $(srcdir)/Makefile.in: $(srcdir)/Makefi + exit 1;; \ + esac; \ + done; \ +- echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu nucleus/Makefile'; \ ++ echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnits nucleus/Makefile'; \ + $(am__cd) $(top_srcdir) && \ +- $(AUTOMAKE) --gnu nucleus/Makefile ++ $(AUTOMAKE) --gnits nucleus/Makefile + .PRECIOUS: Makefile + Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status + @case '$?' in \ diff --git a/EMBOSS-6.3.1-system-plplot.patch b/EMBOSS-6.3.1-system-plplot.patch new file mode 100644 index 0000000..465aca9 --- /dev/null +++ b/EMBOSS-6.3.1-system-plplot.patch @@ -0,0 +1,3154 @@ +diff -up EMBOSS-6.3.1/aclocal.m4.system-plplot EMBOSS-6.3.1/aclocal.m4 +--- EMBOSS-6.3.1/aclocal.m4.system-plplot 2010-07-19 07:55:32.000000000 -0400 ++++ EMBOSS-6.3.1/aclocal.m4 2010-08-03 08:01:37.975129562 -0400 +@@ -8904,6 +8904,7 @@ m4_include([m4/hpdf.m4]) + m4_include([m4/java.m4]) + m4_include([m4/lf_x11.m4]) + m4_include([m4/mysql.m4]) ++m4_include([m4/plplot.m4]) + m4_include([m4/pngdriver.m4]) + m4_include([m4/postgresql.m4]) + m4_include([m4/sgi.m4]) +diff -up EMBOSS-6.3.1/ajax/acd/Makefile.am.system-plplot EMBOSS-6.3.1/ajax/acd/Makefile.am +--- EMBOSS-6.3.1/ajax/acd/Makefile.am.system-plplot 2010-08-03 08:01:37.953240192 -0400 ++++ EMBOSS-6.3.1/ajax/acd/Makefile.am 2010-08-03 08:01:37.976128933 -0400 +@@ -13,10 +13,10 @@ CYGWIN_LDACD = -L../../plplot -L../pcre + endif + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot + endif + +-INCLUDES = -I$(top_srcdir)/plplot \ ++INCLUDES = $(PLPLOT_CFLAGS) \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core \ + -I$(top_srcdir)/ajax/graphics \ +diff -up EMBOSS-6.3.1/ajax/acd/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/acd/Makefile.in +--- EMBOSS-6.3.1/ajax/acd/Makefile.in.system-plplot 2010-08-03 08:01:37.953240192 -0400 ++++ EMBOSS-6.3.1/ajax/acd/Makefile.in 2010-08-03 08:01:37.976128933 -0400 +@@ -42,9 +42,9 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ +- $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ +- $(top_srcdir)/configure.in ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/postgresql.m4 \ ++ $(top_srcdir)/m4/sgi.m4 $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ + $(ACLOCAL_M4) + mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs +@@ -174,6 +174,8 @@ PCRE_MINOR = @PCRE_MINOR@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -256,8 +258,8 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL + @ISCYGWIN_TRUE@-L../graphics -L../ensembl -L../ajaxdb -lajaxdb -lensembl -lajaxg -lajax \ + @ISCYGWIN_TRUE@-leplplot -leexpat -lepcre -lezlib + +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre +-INCLUDES = -I$(top_srcdir)/plplot \ ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot ++INCLUDES = $(PLPLOT_CFLAGS) \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core \ + -I$(top_srcdir)/ajax/graphics \ +diff -up EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am.system-plplot EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am +--- EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am.system-plplot 2010-08-03 08:01:37.953240192 -0400 ++++ EMBOSS-6.3.1/ajax/ajaxdb/Makefile.am 2010-08-03 08:01:37.977129283 -0400 +@@ -13,11 +13,11 @@ CYGWIN_LDAJAXDB = -L../../plplot -L../pc + endif + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot + endif + + +-INCLUDES = -I$(top_srcdir)/plplot \ ++INCLUDES = $(PLPLOT_CFLAGS) \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl + +diff -up EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in +--- EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in.system-plplot 2010-08-03 08:01:37.954253392 -0400 ++++ EMBOSS-6.3.1/ajax/ajaxdb/Makefile.in 2010-08-03 08:01:37.977129283 -0400 +@@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ +@@ -174,6 +175,8 @@ PCRE_MINOR = @PCRE_MINOR@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -255,8 +258,8 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL + @ISCYGWIN_TRUE@CYGWIN_LDAJAXDB = -L../../plplot -L../pcre -L../expat -L../zlib -L../core \ + @ISCYGWIN_TRUE@-L../ensembl -lensembl lajax -leplplot -leexpat -lepcre -lezlib + +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre +-INCLUDES = -I$(top_srcdir)/plplot \ ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot ++INCLUDES = $(PLPLOT_CFLAGS) \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/ensembl + +diff -up EMBOSS-6.3.1/ajax/core/Makefile.am.system-plplot EMBOSS-6.3.1/ajax/core/Makefile.am +--- EMBOSS-6.3.1/ajax/core/Makefile.am.system-plplot 2010-08-03 08:01:37.954253392 -0400 ++++ EMBOSS-6.3.1/ajax/core/Makefile.am 2010-08-03 08:01:37.978128794 -0400 +@@ -12,13 +12,13 @@ CYGWIN_LDAJAX = -L../../plplot -L../expa + endif + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot + endif + + + INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \ + -DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \ +--I$(top_srcdir)/plplot $(EXTRA_INCLUDES) ++$(PLPLOT_CFLAGS) $(EXTRA_INCLUDES) + + AJAXSRC = ajalign.c ajarr.c ajassert.c \ + ajbase.c ajcall.c ajcod.c \ +diff -up EMBOSS-6.3.1/ajax/core/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/core/Makefile.in +--- EMBOSS-6.3.1/ajax/core/Makefile.in.system-plplot 2010-08-03 08:01:37.955251716 -0400 ++++ EMBOSS-6.3.1/ajax/core/Makefile.in 2010-08-03 08:01:37.978128794 -0400 +@@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ +@@ -183,6 +184,8 @@ PCRE_MINOR = @PCRE_MINOR@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -264,10 +267,10 @@ AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFL + @ISCYGWIN_TRUE@CYGWIN_LDAJAX = -L../../plplot -L../expat -L../pcre -L../zlib \ + @ISCYGWIN_TRUE@-leplplot -leexpat -lepcre -lezlib + +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot + INCLUDES = -DAJAX_FIXED_ROOT=$(AJAX_FIXED_ROOT) \ + -DAJAX_SYSTEM="$(AJAX_SYSTEM)" -DPREFIX=\"$(prefix)\" \ +--I$(top_srcdir)/plplot $(EXTRA_INCLUDES) ++$(PLPLOT_CFLAGS) $(EXTRA_INCLUDES) + + AJAXSRC = ajalign.c ajarr.c ajassert.c \ + ajbase.c ajcall.c ajcod.c \ +diff -up EMBOSS-6.3.1/ajax/ensembl/Makefile.am.system-plplot EMBOSS-6.3.1/ajax/ensembl/Makefile.am +--- EMBOSS-6.3.1/ajax/ensembl/Makefile.am.system-plplot 2010-08-03 08:01:37.955251716 -0400 ++++ EMBOSS-6.3.1/ajax/ensembl/Makefile.am 2010-08-03 08:01:37.978128794 -0400 +@@ -10,11 +10,11 @@ CYGWIN_LDENSEMBL = -L../../plplot -L../e + endif + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot + endif + + +-INCLUDES = -I$(top_srcdir)/plplot $(EXTRA_INCLUDES) \ ++INCLUDES = $(PLPLOT_CFLAGS) $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core + + ENSEMBLSRC = ensanalysis.c ensassembly.c ensassemblyexception.c \ +diff -up EMBOSS-6.3.1/ajax/ensembl/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/ensembl/Makefile.in +--- EMBOSS-6.3.1/ajax/ensembl/Makefile.in.system-plplot 2010-08-03 08:01:37.956253741 -0400 ++++ EMBOSS-6.3.1/ajax/ensembl/Makefile.in 2010-08-03 08:01:37.979128584 -0400 +@@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ +@@ -187,6 +188,8 @@ PCRE_MINOR = @PCRE_MINOR@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -264,8 +267,8 @@ lib_LTLIBRARIES = libensembl.la + AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFLAGS) + @ISCYGWIN_TRUE@CYGWIN_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import + @ISCYGWIN_TRUE@CYGWIN_LDENSEMBL = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre +-INCLUDES = -I$(top_srcdir)/plplot $(EXTRA_INCLUDES) \ ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot ++INCLUDES = $(PLPLOT_CFLAGS) $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core + + ENSEMBLSRC = ensanalysis.c ensassembly.c ensassemblyexception.c \ +diff -up EMBOSS-6.3.1/ajax/expat/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/expat/Makefile.in +--- EMBOSS-6.3.1/ajax/expat/Makefile.in.system-plplot 2010-07-19 07:55:40.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/expat/Makefile.in 2010-08-03 08:01:37.979128584 -0400 +@@ -41,7 +41,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ +@@ -177,6 +178,8 @@ PCRE_MINOR = @PCRE_MINOR@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +diff -up EMBOSS-6.3.1/ajax/graphics/ajgraph.c.system-plplot EMBOSS-6.3.1/ajax/graphics/ajgraph.c +--- EMBOSS-6.3.1/ajax/graphics/ajgraph.c.system-plplot 2010-07-19 07:40:00.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/graphics/ajgraph.c 2010-08-03 08:01:37.982131238 -0400 +@@ -35,7 +35,7 @@ + #define AZ 28 + + +-#include "plplotP.h" ++#include + + + static void GraphArray(ajuint numofpoints, +@@ -1054,8 +1054,8 @@ static void GraphSetName(const AjPGraph + { + if(!thys->ready) + { +- ajDebug("=g= plxsfnam ('%S', '%s')\n", txt, ext); +- plxsfnam(ajStrGetPtr(txt), ext); ++ ajDebug("=g= plsfnam ('%S')\n", txt); ++ plsfnam(ajStrGetPtr(txt)); + ajStrAssignS(&graphBasename, txt); + ajStrAssignC(&graphExtension, ext); + if(ajStrGetCharFirst(graphExtension) == '.') +diff -up EMBOSS-6.3.1/ajax/graphics/ajgraph.h.system-plplot EMBOSS-6.3.1/ajax/graphics/ajgraph.h +--- EMBOSS-6.3.1/ajax/graphics/ajgraph.h.system-plplot 2010-04-14 03:39:49.000000000 -0400 ++++ EMBOSS-6.3.1/ajax/graphics/ajgraph.h 2010-08-03 08:01:37.982131238 -0400 +@@ -29,7 +29,7 @@ extern "C" + #ifndef ajgraph_h + #define ajgraph_h + +-#include "plplot.h" ++#include + #include "ajgraphstruct.h" + #include "ajdefine.h" + #include "ajstr.h" +diff -up EMBOSS-6.3.1/ajax/graphics/Makefile.am.system-plplot EMBOSS-6.3.1/ajax/graphics/Makefile.am +--- EMBOSS-6.3.1/ajax/graphics/Makefile.am.system-plplot 2010-08-03 08:01:37.956253741 -0400 ++++ EMBOSS-6.3.1/ajax/graphics/Makefile.am 2010-08-03 08:01:37.982131238 -0400 +@@ -10,11 +10,11 @@ CYGWIN_LDAJAXG = -L../../plplot -L../exp + endif + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot + endif + + +-INCLUDES = -I$(top_srcdir)/plplot \ ++INCLUDES = $(PLPLOT_CFLAGS) \ + $(EXTRA_INCLUDES) -I$(top_srcdir)/ajax/core + + AJAXGSRC = ajgraph.c ajhist.c +diff -up EMBOSS-6.3.1/ajax/graphics/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/graphics/Makefile.in +--- EMBOSS-6.3.1/ajax/graphics/Makefile.in.system-plplot 2010-08-03 08:01:37.956253741 -0400 ++++ EMBOSS-6.3.1/ajax/graphics/Makefile.in 2010-08-03 08:01:37.983130749 -0400 +@@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ +@@ -174,6 +175,8 @@ PCRE_MINOR = @PCRE_MINOR@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -251,8 +254,8 @@ lib_LTLIBRARIES = libajaxg.la + AM_CFLAGS = $(WARN_CFLAGS) $(DEVWARN_CFLAGS) + @ISCYGWIN_TRUE@CYGWIN_LDFLAGS = -no-undefined -Wl,--add-stdcall-alias -Wl,--export-all-symbols -Wl,--enable-auto-import + @ISCYGWIN_TRUE@CYGWIN_LDAJAXG = -L../../plplot -L../expat -L../pcre -L../core -lajax -leplplot -leexpat -lepcre +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre +-INCLUDES = -I$(top_srcdir)/plplot \ ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot ++INCLUDES = $(PLPLOT_CFLAGS) \ + $(EXTRA_INCLUDES) -I$(top_srcdir)/ajax/core + + AJAXGSRC = ajgraph.c ajhist.c +diff -up EMBOSS-6.3.1/ajax/Makefile.in.system-plplot EMBOSS-6.3.1/ajax/Makefile.in +--- EMBOSS-6.3.1/ajax/Makefile.in.system-plplot 2010-08-03 08:01:37.957253392 -0400 ++++ EMBOSS-6.3.1/ajax/Makefile.in 2010-08-03 08:01:37.983130749 -0400 +@@ -39,7 +39,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ +@@ -165,6 +166,8 @@ PCRE_MINOR = @PCRE_MINOR@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +diff -up EMBOSS-6.3.1/configure.in.system-plplot EMBOSS-6.3.1/configure.in +--- EMBOSS-6.3.1/configure.in.system-plplot 2010-08-03 08:01:37.957253392 -0400 ++++ EMBOSS-6.3.1/configure.in 2010-08-03 08:01:37.983130749 -0400 +@@ -288,6 +288,7 @@ CHECK_GENERAL + CHECK_JAVA + CHECK_JAVAOS + CHECK_HPDF ++CHECK_PLPLOT + CHECK_PNGDRIVER + CHECK_AUTH + CHECK_AMD64 +@@ -659,8 +660,8 @@ dnl check and set compilation flags for + CHECK_THREADS + + +-AC_OUTPUT([plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile +-ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile ++AC_OUTPUT([nucleus/Makefile ajax/Makefile ++ajax/core/Makefile + ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile + ajax/acd/Makefile + emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile +diff -up EMBOSS-6.3.1/configure.system-plplot EMBOSS-6.3.1/configure +--- EMBOSS-6.3.1/configure.system-plplot 2010-08-03 08:01:37.962261284 -0400 ++++ EMBOSS-6.3.1/configure 2010-08-03 08:01:37.986131587 -0400 +@@ -792,6 +792,8 @@ MYSQL_LDFLAGS + MYSQL_CFLAGS + MYSQL_VERSION + MYSQL_CONFIG ++PLPLOT_LIBS ++PLPLOT_CFLAGS + JAVA_OK + havejavac + AMPDF_FALSE +@@ -13647,6 +13649,199 @@ $as_echo "no" >&6; } + fi + + ++PLPLOT_LIBS="" ++OLIBS="$LIBS" ++LIBS="" ++ ++check_plplot_ok=yes ++check_plplotpkg_ok=no ++if test x = x && test x = x; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for PLPlot pkg-config info" >&5 ++$as_echo_n "checking for PLPlot pkg-config info... " >&6; } ++ if pkg-config --exists plplotd; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ PLPLOT_CFLAGS=`pkg-config --cflags plplotd` ++ PLPLOT_LIBS=`pkg-config --libs plplotd` ++ ++$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h ++ ++ check_plplotpkg_ok=yes ++ else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ fi ++fi ++if test x$check_plplotpkg_ok = xno; then ++ if test x = x; then ++ ac_fn_c_check_header_mongrel "$LINENO" "plplot.h" "ac_cv_header_plplot_h" "$ac_includes_default" ++if test "x$ac_cv_header_plplot_h" = x""yes; then : ++ check_plplothead_ok=yes ++else ++ check_plplothead_ok=no ++fi ++ ++ ++ if test x$check_plplothead_ok = xyes; then ++ ++$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h ++ ++ else ++ ac_fn_c_check_header_mongrel "$LINENO" "plplot/plplot.h" "ac_cv_header_plplot_plplot_h" "$ac_includes_default" ++if test "x$ac_cv_header_plplot_plplot_h" = x""yes; then : ++ check_plplothead_ok=yes ++else ++ check_plplothead_ok=no ++fi ++ ++ ++ if test x$check_plplothead_ok = xyes; then ++ ++$as_echo "#define PLPLOT_H \"plplot/plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "#define PLPLOTP_H \"plplot/plplotP.h\"" >>confdefs.h ++ ++ else ++ check_plplot_ok=no ++ fi ++ fi ++ else ++ ac_fn_c_check_header_mongrel "$LINENO" "/plplot.h" "ac_cv_header__plplot_h" "$ac_includes_default" ++if test "x$ac_cv_header__plplot_h" = x""yes; then : ++ check_plplothead_ok=yes ++else ++ check_plplothead_ok=no ++fi ++ ++ ++ if test x$check_plplothead_ok = xyes; then ++ ++$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h ++ ++ PLPLOT_CFLAGS="-I" ++ else ++ check_plplot_ok=no ++ fi ++ fi ++ if test x = x; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 ++$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } ++if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lplplotd $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char c_plinit (); ++int ++main () ++{ ++return c_plinit (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_plplotd_c_plinit=yes ++else ++ ac_cv_lib_plplotd_c_plinit=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 ++$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } ++if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++#define HAVE_LIBPLPLOTD 1 ++_ACEOF ++ ++ LIBS="-lplplotd $LIBS" ++ ++else ++ check_plplot_ok=no ++fi ++ ++ PLPLOT_LIBS="-lplplotd" ++ else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 ++$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } ++if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lplplotd -L $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char c_plinit (); ++int ++main () ++{ ++return c_plinit (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_plplotd_c_plinit=yes ++else ++ ac_cv_lib_plplotd_c_plinit=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 ++$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } ++if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++#define HAVE_LIBPLPLOTD 1 ++_ACEOF ++ ++ LIBS="-lplplotd $LIBS" ++ ++else ++ check_plplot_ok=no ++fi ++ ++ PLPLOT_LIBS="-L -lplplotd" ++ fi ++fi ++ ++LIBS="$OLIBS" ++if test x$check_plplot_ok = xyes; then ++ ++ ++ ++$as_echo "#define HAVE_PLPLOT 1" >>confdefs.h ++ ++fi + + + # +@@ -13780,6 +13975,204 @@ fi + + + ++ ++ ++ ++PLPLOT_LIBS="" ++OLIBS="$LIBS" ++LIBS="" ++ ++check_plplot_ok=yes ++check_plplotpkg_ok=no ++if test x = x && test x = x; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for PLPlot pkg-config info" >&5 ++$as_echo_n "checking for PLPlot pkg-config info... " >&6; } ++ if pkg-config --exists plplotd; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5 ++$as_echo "yes" >&6; } ++ PLPLOT_CFLAGS=`pkg-config --cflags plplotd` ++ PLPLOT_LIBS=`pkg-config --libs plplotd` ++ ++$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h ++ ++ check_plplotpkg_ok=yes ++ else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5 ++$as_echo "no" >&6; } ++ fi ++fi ++if test x$check_plplotpkg_ok = xno; then ++ if test x = x; then ++ ac_fn_c_check_header_mongrel "$LINENO" "plplot.h" "ac_cv_header_plplot_h" "$ac_includes_default" ++if test "x$ac_cv_header_plplot_h" = x""yes; then : ++ check_plplothead_ok=yes ++else ++ check_plplothead_ok=no ++fi ++ ++ ++ if test x$check_plplothead_ok = xyes; then ++ ++$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h ++ ++ else ++ ac_fn_c_check_header_mongrel "$LINENO" "plplot/plplot.h" "ac_cv_header_plplot_plplot_h" "$ac_includes_default" ++if test "x$ac_cv_header_plplot_plplot_h" = x""yes; then : ++ check_plplothead_ok=yes ++else ++ check_plplothead_ok=no ++fi ++ ++ ++ if test x$check_plplothead_ok = xyes; then ++ ++$as_echo "#define PLPLOT_H \"plplot/plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "#define PLPLOTP_H \"plplot/plplotP.h\"" >>confdefs.h ++ ++ else ++ check_plplot_ok=no ++ fi ++ fi ++ else ++ ac_fn_c_check_header_mongrel "$LINENO" "/plplot.h" "ac_cv_header__plplot_h" "$ac_includes_default" ++if test "x$ac_cv_header__plplot_h" = x""yes; then : ++ check_plplothead_ok=yes ++else ++ check_plplothead_ok=no ++fi ++ ++ ++ if test x$check_plplothead_ok = xyes; then ++ ++$as_echo "#define PLPLOT_H \"plplot.h\"" >>confdefs.h ++ ++ ++$as_echo "#define PLPLOTP_H \"plplotP.h\"" >>confdefs.h ++ ++ PLPLOT_CFLAGS="-I" ++ else ++ check_plplot_ok=no ++ fi ++ fi ++ if test x = x; then ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 ++$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } ++if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lplplotd $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char c_plinit (); ++int ++main () ++{ ++return c_plinit (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_plplotd_c_plinit=yes ++else ++ ac_cv_lib_plplotd_c_plinit=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 ++$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } ++if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++#define HAVE_LIBPLPLOTD 1 ++_ACEOF ++ ++ LIBS="-lplplotd $LIBS" ++ ++else ++ check_plplot_ok=no ++fi ++ ++ PLPLOT_LIBS="-lplplotd" ++ else ++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for c_plinit in -lplplotd" >&5 ++$as_echo_n "checking for c_plinit in -lplplotd... " >&6; } ++if test "${ac_cv_lib_plplotd_c_plinit+set}" = set; then : ++ $as_echo_n "(cached) " >&6 ++else ++ ac_check_lib_save_LIBS=$LIBS ++LIBS="-lplplotd -L $LIBS" ++cat confdefs.h - <<_ACEOF >conftest.$ac_ext ++/* end confdefs.h. */ ++ ++/* Override any GCC internal prototype to avoid an error. ++ Use char because int might match the return type of a GCC ++ builtin and then its argument prototype would still apply. */ ++#ifdef __cplusplus ++extern "C" ++#endif ++char c_plinit (); ++int ++main () ++{ ++return c_plinit (); ++ ; ++ return 0; ++} ++_ACEOF ++if ac_fn_c_try_link "$LINENO"; then : ++ ac_cv_lib_plplotd_c_plinit=yes ++else ++ ac_cv_lib_plplotd_c_plinit=no ++fi ++rm -f core conftest.err conftest.$ac_objext \ ++ conftest$ac_exeext conftest.$ac_ext ++LIBS=$ac_check_lib_save_LIBS ++fi ++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_plplotd_c_plinit" >&5 ++$as_echo "$ac_cv_lib_plplotd_c_plinit" >&6; } ++if test "x$ac_cv_lib_plplotd_c_plinit" = x""yes; then : ++ cat >>confdefs.h <<_ACEOF ++#define HAVE_LIBPLPLOTD 1 ++_ACEOF ++ ++ LIBS="-lplplotd $LIBS" ++ ++else ++ check_plplot_ok=no ++fi ++ ++ PLPLOT_LIBS="-L -lplplotd" ++ fi ++fi ++ ++LIBS="$OLIBS" ++if test x$check_plplot_ok = xyes; then ++ ++ ++ ++$as_echo "#define HAVE_PLPLOT 1" >>confdefs.h ++ ++fi ++ ++ + # + # Handle user hints + # +@@ -15299,7 +15692,7 @@ fi + + + +-ac_config_files="$ac_config_files plplot/Makefile plplot/lib/Makefile nucleus/Makefile ajax/Makefile ajax/expat/Makefile ajax/zlib/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/JASPAR_PBM/Makefile emboss/data/JASPAR_PBM_HLH/Makefile emboss/data/JASPAR_PBM_HOMEO/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile" ++ac_config_files="$ac_config_files nucleus/Makefile ajax/Makefile ajax/core/Makefile ajax/graphics/Makefile ajax/ensembl/Makefile ajax/ajaxdb/Makefile ajax/acd/Makefile emboss/Makefile emboss/acd/Makefile test/Makefile test/data/Makefile test/embl/Makefile test/genbank/Makefile test/pir/Makefile test/swiss/Makefile test/swnew/Makefile test/testdb/Makefile emboss/data/Makefile emboss/data/AAINDEX/Makefile emboss/data/CODONS/Makefile emboss/data/REBASE/Makefile emboss/data/JASPAR_CORE/Makefile emboss/data/JASPAR_FAM/Makefile emboss/data/JASPAR_PHYLOFACTS/Makefile emboss/data/JASPAR_CNE/Makefile emboss/data/JASPAR_POLII/Makefile emboss/data/JASPAR_SPLICE/Makefile emboss/data/JASPAR_PBM/Makefile emboss/data/JASPAR_PBM_HLH/Makefile emboss/data/JASPAR_PBM_HOMEO/Makefile emboss/data/PRINTS/Makefile emboss/data/PROSITE/Makefile doc/Makefile doc/manuals/Makefile doc/tutorials/Makefile doc/programs/Makefile doc/programs/html/Makefile doc/programs/text/Makefile jemboss/Makefile jemboss/images/Makefile jemboss/lib/Makefile jemboss/lib/axis/Makefile jemboss/resources/Makefile jemboss/utils/Makefile Makefile" + + cat >confcache <<\_ACEOF + # This file is a shell script that caches the results of configure +@@ -16353,12 +16746,8 @@ do + case $ac_config_target in + "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;; + "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;; +- "plplot/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/Makefile" ;; +- "plplot/lib/Makefile") CONFIG_FILES="$CONFIG_FILES plplot/lib/Makefile" ;; + "nucleus/Makefile") CONFIG_FILES="$CONFIG_FILES nucleus/Makefile" ;; + "ajax/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/Makefile" ;; +- "ajax/expat/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/expat/Makefile" ;; +- "ajax/zlib/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/zlib/Makefile" ;; + "ajax/core/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/core/Makefile" ;; + "ajax/graphics/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/graphics/Makefile" ;; + "ajax/ensembl/Makefile") CONFIG_FILES="$CONFIG_FILES ajax/ensembl/Makefile" ;; +diff -up EMBOSS-6.3.1/emboss/Makefile.am.system-plplot EMBOSS-6.3.1/emboss/Makefile.am +--- EMBOSS-6.3.1/emboss/Makefile.am.system-plplot 2010-08-03 08:01:37.963254649 -0400 ++++ EMBOSS-6.3.1/emboss/Makefile.am 2010-08-03 08:02:04.639273502 -0400 +@@ -79,14 +79,14 @@ wordcount wordfinder wordmatch wossname + yank + + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot + endif + + INCLUDES = -I$(top_srcdir)/nucleus \ +- $(EXTRA_INCLUDES) \ ++ $(EXTRA_INCLUDES) $(PLPLOT_CFLAGS) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ + -I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \ +- -I$(top_srcdir)/ajax/acd -I$(top_srcdir)/plplot ++ -I$(top_srcdir)/ajax/acd + + + aaindexextract_SOURCES = aaindexextract.c +@@ -319,7 +319,7 @@ testplot_SOURCES = testplot.c + treetypedisplay_SOURCES = treetypedisplay.c + + if !ESYSTEMLIBS +-EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ++EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la + endif + + +@@ -327,7 +327,7 @@ LDADD = ../nucleus/libnucleus.la ../ajax + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ + $(EXTRA_LDS) \ +- ../plplot/libeplplot.la \ ++ $(PLPLOT_LIBS) \ + $(XLIB) + + pkgdata_DATA = emboss.default.template +diff -up EMBOSS-6.3.1/emboss/Makefile.in.system-plplot EMBOSS-6.3.1/emboss/Makefile.in +--- EMBOSS-6.3.1/emboss/Makefile.in.system-plplot 2010-08-03 08:01:37.968108260 -0400 ++++ EMBOSS-6.3.1/emboss/Makefile.in 2010-08-03 08:02:28.757235378 -0400 +@@ -119,7 +119,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ +@@ -137,14 +138,14 @@ aaindexextract_DEPENDENCIES = ../nucleus + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_abiview_OBJECTS = abiview.$(OBJEXT) + abiview_OBJECTS = $(am_abiview_OBJECTS) + abiview_LDADD = $(LDADD) + abiview_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_acdc_OBJECTS = acdc.$(OBJEXT) + acdc_OBJECTS = $(am_acdc_OBJECTS) +@@ -152,7 +153,7 @@ acdc_LDADD = $(LDADD) + acdc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_acdgalaxy_OBJECTS = acdgalaxy.$(OBJEXT) + acdgalaxy_OBJECTS = $(am_acdgalaxy_OBJECTS) +@@ -161,14 +162,14 @@ acdgalaxy_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_acdlog_OBJECTS = acdlog.$(OBJEXT) + acdlog_OBJECTS = $(am_acdlog_OBJECTS) + acdlog_LDADD = $(LDADD) + acdlog_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_acdpretty_OBJECTS = acdpretty.$(OBJEXT) + acdpretty_OBJECTS = $(am_acdpretty_OBJECTS) +@@ -177,7 +178,7 @@ acdpretty_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_acdrelations_OBJECTS = acdrelations.$(OBJEXT) + acdrelations_OBJECTS = $(am_acdrelations_OBJECTS) + acdrelations_LDADD = $(LDADD) +@@ -185,14 +186,14 @@ acdrelations_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_acdtable_OBJECTS = acdtable.$(OBJEXT) + acdtable_OBJECTS = $(am_acdtable_OBJECTS) + acdtable_LDADD = $(LDADD) + acdtable_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_acdtrace_OBJECTS = acdtrace.$(OBJEXT) + acdtrace_OBJECTS = $(am_acdtrace_OBJECTS) +@@ -200,7 +201,7 @@ acdtrace_LDADD = $(LDADD) + acdtrace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_acdvalid_OBJECTS = acdvalid.$(OBJEXT) + acdvalid_OBJECTS = $(am_acdvalid_OBJECTS) +@@ -208,7 +209,7 @@ acdvalid_LDADD = $(LDADD) + acdvalid_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_acdxsd_OBJECTS = acdxsd.$(OBJEXT) + acdxsd_OBJECTS = $(am_acdxsd_OBJECTS) +@@ -216,7 +217,7 @@ acdxsd_LDADD = $(LDADD) + acdxsd_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_ajtest_OBJECTS = ajtest.$(OBJEXT) + ajtest_OBJECTS = $(am_ajtest_OBJECTS) +@@ -224,7 +225,7 @@ ajtest_LDADD = $(LDADD) + ajtest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_aligncopy_OBJECTS = aligncopy.$(OBJEXT) + aligncopy_OBJECTS = $(am_aligncopy_OBJECTS) +@@ -233,7 +234,7 @@ aligncopy_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_aligncopypair_OBJECTS = aligncopypair.$(OBJEXT) + aligncopypair_OBJECTS = $(am_aligncopypair_OBJECTS) + aligncopypair_LDADD = $(LDADD) +@@ -241,7 +242,7 @@ aligncopypair_DEPENDENCIES = ../nucleus/ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_antigenic_OBJECTS = antigenic.$(OBJEXT) + antigenic_OBJECTS = $(am_antigenic_OBJECTS) + antigenic_LDADD = $(LDADD) +@@ -249,7 +250,7 @@ antigenic_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_backtranambig_OBJECTS = backtranambig.$(OBJEXT) + backtranambig_OBJECTS = $(am_backtranambig_OBJECTS) + backtranambig_LDADD = $(LDADD) +@@ -257,7 +258,7 @@ backtranambig_DEPENDENCIES = ../nucleus/ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_backtranseq_OBJECTS = backtranseq.$(OBJEXT) + backtranseq_OBJECTS = $(am_backtranseq_OBJECTS) + backtranseq_LDADD = $(LDADD) +@@ -265,14 +266,14 @@ backtranseq_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_banana_OBJECTS = banana.$(OBJEXT) + banana_OBJECTS = $(am_banana_OBJECTS) + banana_LDADD = $(LDADD) + banana_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_biosed_OBJECTS = biosed.$(OBJEXT) + biosed_OBJECTS = $(am_biosed_OBJECTS) +@@ -280,7 +281,7 @@ biosed_LDADD = $(LDADD) + biosed_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_btwisted_OBJECTS = btwisted.$(OBJEXT) + btwisted_OBJECTS = $(am_btwisted_OBJECTS) +@@ -288,7 +289,7 @@ btwisted_LDADD = $(LDADD) + btwisted_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_cai_OBJECTS = cai.$(OBJEXT) + cai_OBJECTS = $(am_cai_OBJECTS) +@@ -296,7 +297,7 @@ cai_LDADD = $(LDADD) + cai_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_chaos_OBJECTS = chaos.$(OBJEXT) + chaos_OBJECTS = $(am_chaos_OBJECTS) +@@ -304,7 +305,7 @@ chaos_LDADD = $(LDADD) + chaos_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_charge_OBJECTS = charge.$(OBJEXT) + charge_OBJECTS = $(am_charge_OBJECTS) +@@ -312,7 +313,7 @@ charge_LDADD = $(LDADD) + charge_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_checktrans_OBJECTS = checktrans.$(OBJEXT) + checktrans_OBJECTS = $(am_checktrans_OBJECTS) +@@ -321,14 +322,14 @@ checktrans_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_chips_OBJECTS = chips.$(OBJEXT) + chips_OBJECTS = $(am_chips_OBJECTS) + chips_LDADD = $(LDADD) + chips_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_cirdna_OBJECTS = cirdna.$(OBJEXT) + cirdna_OBJECTS = $(am_cirdna_OBJECTS) +@@ -336,7 +337,7 @@ cirdna_LDADD = $(LDADD) + cirdna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_codcmp_OBJECTS = codcmp.$(OBJEXT) + codcmp_OBJECTS = $(am_codcmp_OBJECTS) +@@ -344,7 +345,7 @@ codcmp_LDADD = $(LDADD) + codcmp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + codcopy_SOURCES = codcopy.c + codcopy_OBJECTS = codcopy.$(OBJEXT) +@@ -352,7 +353,7 @@ codcopy_LDADD = $(LDADD) + codcopy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_coderet_OBJECTS = coderet.$(OBJEXT) + coderet_OBJECTS = $(am_coderet_OBJECTS) +@@ -360,7 +361,7 @@ coderet_LDADD = $(LDADD) + coderet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_complex_OBJECTS = complex.$(OBJEXT) + complex_OBJECTS = $(am_complex_OBJECTS) +@@ -368,7 +369,7 @@ complex_LDADD = $(LDADD) + complex_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_compseq_OBJECTS = compseq.$(OBJEXT) + compseq_OBJECTS = $(am_compseq_OBJECTS) +@@ -376,7 +377,7 @@ compseq_LDADD = $(LDADD) + compseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_cons_OBJECTS = cons.$(OBJEXT) + cons_OBJECTS = $(am_cons_OBJECTS) +@@ -384,7 +385,7 @@ cons_LDADD = $(LDADD) + cons_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_consambig_OBJECTS = consambig.$(OBJEXT) + consambig_OBJECTS = $(am_consambig_OBJECTS) +@@ -393,7 +394,7 @@ consambig_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_corbatest_OBJECTS = corbatest.$(OBJEXT) + corbatest_OBJECTS = $(am_corbatest_OBJECTS) + corbatest_LDADD = $(LDADD) +@@ -401,14 +402,14 @@ corbatest_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_cpgplot_OBJECTS = cpgplot.$(OBJEXT) + cpgplot_OBJECTS = $(am_cpgplot_OBJECTS) + cpgplot_LDADD = $(LDADD) + cpgplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_cpgreport_OBJECTS = cpgreport.$(OBJEXT) + cpgreport_OBJECTS = $(am_cpgreport_OBJECTS) +@@ -417,14 +418,14 @@ cpgreport_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_cusp_OBJECTS = cusp.$(OBJEXT) + cusp_OBJECTS = $(am_cusp_OBJECTS) + cusp_LDADD = $(LDADD) + cusp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_cutgextract_OBJECTS = cutgextract.$(OBJEXT) + cutgextract_OBJECTS = $(am_cutgextract_OBJECTS) +@@ -433,14 +434,14 @@ cutgextract_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_cutseq_OBJECTS = cutseq.$(OBJEXT) + cutseq_OBJECTS = $(am_cutseq_OBJECTS) + cutseq_LDADD = $(LDADD) + cutseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_dan_OBJECTS = dan.$(OBJEXT) + dan_OBJECTS = $(am_dan_OBJECTS) +@@ -448,7 +449,7 @@ dan_LDADD = $(LDADD) + dan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_dbiblast_OBJECTS = dbiblast.$(OBJEXT) + dbiblast_OBJECTS = $(am_dbiblast_OBJECTS) +@@ -456,7 +457,7 @@ dbiblast_LDADD = $(LDADD) + dbiblast_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_dbifasta_OBJECTS = dbifasta.$(OBJEXT) + dbifasta_OBJECTS = $(am_dbifasta_OBJECTS) +@@ -464,7 +465,7 @@ dbifasta_LDADD = $(LDADD) + dbifasta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_dbiflat_OBJECTS = dbiflat.$(OBJEXT) + dbiflat_OBJECTS = $(am_dbiflat_OBJECTS) +@@ -472,7 +473,7 @@ dbiflat_LDADD = $(LDADD) + dbiflat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_dbigcg_OBJECTS = dbigcg.$(OBJEXT) + dbigcg_OBJECTS = $(am_dbigcg_OBJECTS) +@@ -480,7 +481,7 @@ dbigcg_LDADD = $(LDADD) + dbigcg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_dbxfasta_OBJECTS = dbxfasta.$(OBJEXT) + dbxfasta_OBJECTS = $(am_dbxfasta_OBJECTS) +@@ -488,7 +489,7 @@ dbxfasta_LDADD = $(LDADD) + dbxfasta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_dbxflat_OBJECTS = dbxflat.$(OBJEXT) + dbxflat_OBJECTS = $(am_dbxflat_OBJECTS) +@@ -496,7 +497,7 @@ dbxflat_LDADD = $(LDADD) + dbxflat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_dbxgcg_OBJECTS = dbxgcg.$(OBJEXT) + dbxgcg_OBJECTS = $(am_dbxgcg_OBJECTS) +@@ -504,7 +505,7 @@ dbxgcg_LDADD = $(LDADD) + dbxgcg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_degapseq_OBJECTS = degapseq.$(OBJEXT) + degapseq_OBJECTS = $(am_degapseq_OBJECTS) +@@ -512,7 +513,7 @@ degapseq_LDADD = $(LDADD) + degapseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_density_OBJECTS = density.$(OBJEXT) + density_OBJECTS = $(am_density_OBJECTS) +@@ -520,7 +521,7 @@ density_LDADD = $(LDADD) + density_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_descseq_OBJECTS = descseq.$(OBJEXT) + descseq_OBJECTS = $(am_descseq_OBJECTS) +@@ -528,7 +529,7 @@ descseq_LDADD = $(LDADD) + descseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_diffseq_OBJECTS = diffseq.$(OBJEXT) + diffseq_OBJECTS = $(am_diffseq_OBJECTS) +@@ -536,7 +537,7 @@ diffseq_LDADD = $(LDADD) + diffseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_digest_OBJECTS = digest.$(OBJEXT) + digest_OBJECTS = $(am_digest_OBJECTS) +@@ -544,7 +545,7 @@ digest_LDADD = $(LDADD) + digest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_distmat_OBJECTS = distmat.$(OBJEXT) + distmat_OBJECTS = $(am_distmat_OBJECTS) +@@ -552,7 +553,7 @@ distmat_LDADD = $(LDADD) + distmat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + domtesta_SOURCES = domtesta.c + domtesta_OBJECTS = domtesta.$(OBJEXT) +@@ -560,7 +561,7 @@ domtesta_LDADD = $(LDADD) + domtesta_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + domtestb_SOURCES = domtestb.c + domtestb_OBJECTS = domtestb.$(OBJEXT) +@@ -568,7 +569,7 @@ domtestb_LDADD = $(LDADD) + domtestb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + domtestc_SOURCES = domtestc.c + domtestc_OBJECTS = domtestc.$(OBJEXT) +@@ -576,7 +577,7 @@ domtestc_LDADD = $(LDADD) + domtestc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + domtestd_SOURCES = domtestd.c + domtestd_OBJECTS = domtestd.$(OBJEXT) +@@ -584,7 +585,7 @@ domtestd_LDADD = $(LDADD) + domtestd_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_dotmatcher_OBJECTS = dotmatcher.$(OBJEXT) + dotmatcher_OBJECTS = $(am_dotmatcher_OBJECTS) +@@ -593,14 +594,14 @@ dotmatcher_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_dotpath_OBJECTS = dotpath.$(OBJEXT) + dotpath_OBJECTS = $(am_dotpath_OBJECTS) + dotpath_LDADD = $(LDADD) + dotpath_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_dottup_OBJECTS = dottup.$(OBJEXT) + dottup_OBJECTS = $(am_dottup_OBJECTS) +@@ -608,7 +609,7 @@ dottup_LDADD = $(LDADD) + dottup_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_dreg_OBJECTS = dreg.$(OBJEXT) + dreg_OBJECTS = $(am_dreg_OBJECTS) +@@ -616,7 +617,7 @@ dreg_LDADD = $(LDADD) + dreg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_edamclean_OBJECTS = edamclean.$(OBJEXT) + edamclean_OBJECTS = $(am_edamclean_OBJECTS) +@@ -625,14 +626,14 @@ edamclean_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_edialign_OBJECTS = edialign.$(OBJEXT) + edialign_OBJECTS = $(am_edialign_OBJECTS) + edialign_LDADD = $(LDADD) + edialign_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_einverted_OBJECTS = einverted.$(OBJEXT) + einverted_OBJECTS = $(am_einverted_OBJECTS) +@@ -641,7 +642,7 @@ einverted_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_embossdata_OBJECTS = embossdata.$(OBJEXT) + embossdata_OBJECTS = $(am_embossdata_OBJECTS) + embossdata_LDADD = $(LDADD) +@@ -649,7 +650,7 @@ embossdata_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_embossversion_OBJECTS = embossversion.$(OBJEXT) + embossversion_OBJECTS = $(am_embossversion_OBJECTS) + embossversion_LDADD = $(LDADD) +@@ -657,14 +658,14 @@ embossversion_DEPENDENCIES = ../nucleus/ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_emma_OBJECTS = emma.$(OBJEXT) + emma_OBJECTS = $(am_emma_OBJECTS) + emma_LDADD = $(LDADD) + emma_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_emowse_OBJECTS = emowse.$(OBJEXT) + emowse_OBJECTS = $(am_emowse_OBJECTS) +@@ -672,7 +673,7 @@ emowse_LDADD = $(LDADD) + emowse_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_ensembltest_OBJECTS = ensembltest.$(OBJEXT) + ensembltest_OBJECTS = $(am_ensembltest_OBJECTS) +@@ -681,14 +682,14 @@ ensembltest_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_entrails_OBJECTS = entrails.$(OBJEXT) + entrails_OBJECTS = $(am_entrails_OBJECTS) + entrails_LDADD = $(LDADD) + entrails_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_entrailsbook_OBJECTS = entrailsbook.$(OBJEXT) + entrailsbook_OBJECTS = $(am_entrailsbook_OBJECTS) +@@ -697,7 +698,7 @@ entrailsbook_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_entrailshtml_OBJECTS = entrailshtml.$(OBJEXT) + entrailshtml_OBJECTS = $(am_entrailshtml_OBJECTS) + entrailshtml_LDADD = $(LDADD) +@@ -705,7 +706,7 @@ entrailshtml_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_entrailswiki_OBJECTS = entrailswiki.$(OBJEXT) + entrailswiki_OBJECTS = $(am_entrailswiki_OBJECTS) + entrailswiki_LDADD = $(LDADD) +@@ -713,14 +714,14 @@ entrailswiki_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_entret_OBJECTS = entret.$(OBJEXT) + entret_OBJECTS = $(am_entret_OBJECTS) + entret_LDADD = $(LDADD) + entret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_epestfind_OBJECTS = epestfind.$(OBJEXT) + epestfind_OBJECTS = $(am_epestfind_OBJECTS) +@@ -729,14 +730,14 @@ epestfind_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_eprimer3_OBJECTS = eprimer3.$(OBJEXT) + eprimer3_OBJECTS = $(am_eprimer3_OBJECTS) + eprimer3_LDADD = $(LDADD) + eprimer3_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_equicktandem_OBJECTS = equicktandem.$(OBJEXT) + equicktandem_OBJECTS = $(am_equicktandem_OBJECTS) +@@ -745,7 +746,7 @@ equicktandem_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_est2genome_OBJECTS = est2genome.$(OBJEXT) + est2genome_OBJECTS = $(am_est2genome_OBJECTS) + est2genome_LDADD = $(LDADD) +@@ -753,14 +754,14 @@ est2genome_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_etandem_OBJECTS = etandem.$(OBJEXT) + etandem_OBJECTS = $(am_etandem_OBJECTS) + etandem_LDADD = $(LDADD) + etandem_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_extractalign_OBJECTS = extractalign.$(OBJEXT) + extractalign_OBJECTS = $(am_extractalign_OBJECTS) +@@ -769,7 +770,7 @@ extractalign_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_extractfeat_OBJECTS = extractfeat.$(OBJEXT) + extractfeat_OBJECTS = $(am_extractfeat_OBJECTS) + extractfeat_LDADD = $(LDADD) +@@ -777,7 +778,7 @@ extractfeat_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_extractseq_OBJECTS = extractseq.$(OBJEXT) + extractseq_OBJECTS = $(am_extractseq_OBJECTS) + extractseq_LDADD = $(LDADD) +@@ -785,14 +786,14 @@ extractseq_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_featcopy_OBJECTS = featcopy.$(OBJEXT) + featcopy_OBJECTS = $(am_featcopy_OBJECTS) + featcopy_LDADD = $(LDADD) + featcopy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_featreport_OBJECTS = featreport.$(OBJEXT) + featreport_OBJECTS = $(am_featreport_OBJECTS) +@@ -801,14 +802,14 @@ featreport_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_findkm_OBJECTS = findkm.$(OBJEXT) + findkm_OBJECTS = $(am_findkm_OBJECTS) + findkm_LDADD = $(LDADD) + findkm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_freak_OBJECTS = freak.$(OBJEXT) + freak_OBJECTS = $(am_freak_OBJECTS) +@@ -816,7 +817,7 @@ freak_LDADD = $(LDADD) + freak_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_fuzznuc_OBJECTS = fuzznuc.$(OBJEXT) + fuzznuc_OBJECTS = $(am_fuzznuc_OBJECTS) +@@ -824,7 +825,7 @@ fuzznuc_LDADD = $(LDADD) + fuzznuc_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_fuzzpro_OBJECTS = fuzzpro.$(OBJEXT) + fuzzpro_OBJECTS = $(am_fuzzpro_OBJECTS) +@@ -832,7 +833,7 @@ fuzzpro_LDADD = $(LDADD) + fuzzpro_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_fuzztran_OBJECTS = fuzztran.$(OBJEXT) + fuzztran_OBJECTS = $(am_fuzztran_OBJECTS) +@@ -840,7 +841,7 @@ fuzztran_LDADD = $(LDADD) + fuzztran_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_garnier_OBJECTS = garnier.$(OBJEXT) + garnier_OBJECTS = $(am_garnier_OBJECTS) +@@ -848,7 +849,7 @@ garnier_LDADD = $(LDADD) + garnier_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_geecee_OBJECTS = geecee.$(OBJEXT) + geecee_OBJECTS = $(am_geecee_OBJECTS) +@@ -856,7 +857,7 @@ geecee_LDADD = $(LDADD) + geecee_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_getorf_OBJECTS = getorf.$(OBJEXT) + getorf_OBJECTS = $(am_getorf_OBJECTS) +@@ -864,7 +865,7 @@ getorf_LDADD = $(LDADD) + getorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_helixturnhelix_OBJECTS = helixturnhelix.$(OBJEXT) + helixturnhelix_OBJECTS = $(am_helixturnhelix_OBJECTS) +@@ -873,7 +874,7 @@ helixturnhelix_DEPENDENCIES = ../nucleus + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_histogramtest_OBJECTS = histogramtest.$(OBJEXT) + histogramtest_OBJECTS = $(am_histogramtest_OBJECTS) + histogramtest_LDADD = $(LDADD) +@@ -881,14 +882,14 @@ histogramtest_DEPENDENCIES = ../nucleus/ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_hmoment_OBJECTS = hmoment.$(OBJEXT) + hmoment_OBJECTS = $(am_hmoment_OBJECTS) + hmoment_LDADD = $(LDADD) + hmoment_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_iep_OBJECTS = iep.$(OBJEXT) + iep_OBJECTS = $(am_iep_OBJECTS) +@@ -896,7 +897,7 @@ iep_LDADD = $(LDADD) + iep_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_infoalign_OBJECTS = infoalign.$(OBJEXT) + infoalign_OBJECTS = $(am_infoalign_OBJECTS) +@@ -905,14 +906,14 @@ infoalign_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_infobase_OBJECTS = infobase.$(OBJEXT) + infobase_OBJECTS = $(am_infobase_OBJECTS) + infobase_LDADD = $(LDADD) + infobase_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_inforesidue_OBJECTS = inforesidue.$(OBJEXT) + inforesidue_OBJECTS = $(am_inforesidue_OBJECTS) +@@ -921,14 +922,14 @@ inforesidue_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_infoseq_OBJECTS = infoseq.$(OBJEXT) + infoseq_OBJECTS = $(am_infoseq_OBJECTS) + infoseq_LDADD = $(LDADD) + infoseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_intconv_OBJECTS = intconv.$(OBJEXT) + intconv_OBJECTS = $(am_intconv_OBJECTS) +@@ -936,7 +937,7 @@ intconv_LDADD = $(LDADD) + intconv_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_isochore_OBJECTS = isochore.$(OBJEXT) + isochore_OBJECTS = $(am_isochore_OBJECTS) +@@ -944,7 +945,7 @@ isochore_LDADD = $(LDADD) + isochore_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_jaspextract_OBJECTS = jaspextract.$(OBJEXT) + jaspextract_OBJECTS = $(am_jaspextract_OBJECTS) +@@ -953,14 +954,14 @@ jaspextract_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_jaspscan_OBJECTS = jaspscan.$(OBJEXT) + jaspscan_OBJECTS = $(am_jaspscan_OBJECTS) + jaspscan_LDADD = $(LDADD) + jaspscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_jembossctl_OBJECTS = jembossctl.$(OBJEXT) + jembossctl_OBJECTS = $(am_jembossctl_OBJECTS) +@@ -969,14 +970,14 @@ jembossctl_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_lindna_OBJECTS = lindna.$(OBJEXT) + lindna_OBJECTS = $(am_lindna_OBJECTS) + lindna_LDADD = $(LDADD) + lindna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_listor_OBJECTS = listor.$(OBJEXT) + listor_OBJECTS = $(am_listor_OBJECTS) +@@ -984,7 +985,7 @@ listor_LDADD = $(LDADD) + listor_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + makenucseq_SOURCES = makenucseq.c + makenucseq_OBJECTS = makenucseq.$(OBJEXT) +@@ -993,7 +994,7 @@ makenucseq_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + makeprotseq_SOURCES = makeprotseq.c + makeprotseq_OBJECTS = makeprotseq.$(OBJEXT) + makeprotseq_LDADD = $(LDADD) +@@ -1001,14 +1002,14 @@ makeprotseq_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_marscan_OBJECTS = marscan.$(OBJEXT) + marscan_OBJECTS = $(am_marscan_OBJECTS) + marscan_LDADD = $(LDADD) + marscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_martattributes_OBJECTS = martattributes.$(OBJEXT) + martattributes_OBJECTS = $(am_martattributes_OBJECTS) +@@ -1017,7 +1018,7 @@ martattributes_DEPENDENCIES = ../nucleus + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_martdatasets_OBJECTS = martdatasets.$(OBJEXT) + martdatasets_OBJECTS = $(am_martdatasets_OBJECTS) + martdatasets_LDADD = $(LDADD) +@@ -1025,7 +1026,7 @@ martdatasets_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_martfilters_OBJECTS = martfilters.$(OBJEXT) + martfilters_OBJECTS = $(am_martfilters_OBJECTS) + martfilters_LDADD = $(LDADD) +@@ -1033,7 +1034,7 @@ martfilters_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_martquery_OBJECTS = martquery.$(OBJEXT) + martquery_OBJECTS = $(am_martquery_OBJECTS) + martquery_LDADD = $(LDADD) +@@ -1041,7 +1042,7 @@ martquery_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_martregistry_OBJECTS = martregistry.$(OBJEXT) + martregistry_OBJECTS = $(am_martregistry_OBJECTS) + martregistry_LDADD = $(LDADD) +@@ -1049,14 +1050,14 @@ martregistry_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_martseqs_OBJECTS = martseqs.$(OBJEXT) + martseqs_OBJECTS = $(am_martseqs_OBJECTS) + martseqs_LDADD = $(LDADD) + martseqs_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_maskambignuc_OBJECTS = maskambignuc.$(OBJEXT) + maskambignuc_OBJECTS = $(am_maskambignuc_OBJECTS) +@@ -1065,7 +1066,7 @@ maskambignuc_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_maskambigprot_OBJECTS = maskambigprot.$(OBJEXT) + maskambigprot_OBJECTS = $(am_maskambigprot_OBJECTS) + maskambigprot_LDADD = $(LDADD) +@@ -1073,14 +1074,14 @@ maskambigprot_DEPENDENCIES = ../nucleus/ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_maskfeat_OBJECTS = maskfeat.$(OBJEXT) + maskfeat_OBJECTS = $(am_maskfeat_OBJECTS) + maskfeat_LDADD = $(LDADD) + maskfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_maskseq_OBJECTS = maskseq.$(OBJEXT) + maskseq_OBJECTS = $(am_maskseq_OBJECTS) +@@ -1088,7 +1089,7 @@ maskseq_LDADD = $(LDADD) + maskseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_matcher_OBJECTS = matcher.$(OBJEXT) + matcher_OBJECTS = $(am_matcher_OBJECTS) +@@ -1096,7 +1097,7 @@ matcher_LDADD = $(LDADD) + matcher_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_megamerger_OBJECTS = megamerger.$(OBJEXT) + megamerger_OBJECTS = $(am_megamerger_OBJECTS) +@@ -1105,14 +1106,14 @@ megamerger_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_merger_OBJECTS = merger.$(OBJEXT) + merger_OBJECTS = $(am_merger_OBJECTS) + merger_LDADD = $(LDADD) + merger_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_msbar_OBJECTS = msbar.$(OBJEXT) + msbar_OBJECTS = $(am_msbar_OBJECTS) +@@ -1120,7 +1121,7 @@ msbar_LDADD = $(LDADD) + msbar_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_mwcontam_OBJECTS = mwcontam.$(OBJEXT) + mwcontam_OBJECTS = $(am_mwcontam_OBJECTS) +@@ -1128,7 +1129,7 @@ mwcontam_LDADD = $(LDADD) + mwcontam_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_mwfilter_OBJECTS = mwfilter.$(OBJEXT) + mwfilter_OBJECTS = $(am_mwfilter_OBJECTS) +@@ -1136,7 +1137,7 @@ mwfilter_LDADD = $(LDADD) + mwfilter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_needle_OBJECTS = needle.$(OBJEXT) + needle_OBJECTS = $(am_needle_OBJECTS) +@@ -1144,7 +1145,7 @@ needle_LDADD = $(LDADD) + needle_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_needleall_OBJECTS = needleall.$(OBJEXT) + needleall_OBJECTS = $(am_needleall_OBJECTS) +@@ -1153,14 +1154,14 @@ needleall_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_newcoils_OBJECTS = newcoils.$(OBJEXT) + newcoils_OBJECTS = $(am_newcoils_OBJECTS) + newcoils_LDADD = $(LDADD) + newcoils_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_newcpgreport_OBJECTS = newcpgreport.$(OBJEXT) + newcpgreport_OBJECTS = $(am_newcpgreport_OBJECTS) +@@ -1169,7 +1170,7 @@ newcpgreport_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_newcpgseek_OBJECTS = newcpgseek.$(OBJEXT) + newcpgseek_OBJECTS = $(am_newcpgseek_OBJECTS) + newcpgseek_LDADD = $(LDADD) +@@ -1177,14 +1178,14 @@ newcpgseek_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_newseq_OBJECTS = newseq.$(OBJEXT) + newseq_OBJECTS = $(am_newseq_OBJECTS) + newseq_LDADD = $(LDADD) + newseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_nohtml_OBJECTS = nohtml.$(OBJEXT) + nohtml_OBJECTS = $(am_nohtml_OBJECTS) +@@ -1192,7 +1193,7 @@ nohtml_LDADD = $(LDADD) + nohtml_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_noreturn_OBJECTS = noreturn.$(OBJEXT) + noreturn_OBJECTS = $(am_noreturn_OBJECTS) +@@ -1200,7 +1201,7 @@ noreturn_LDADD = $(LDADD) + noreturn_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_nospace_OBJECTS = nospace.$(OBJEXT) + nospace_OBJECTS = $(am_nospace_OBJECTS) +@@ -1208,7 +1209,7 @@ nospace_LDADD = $(LDADD) + nospace_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_notab_OBJECTS = notab.$(OBJEXT) + notab_OBJECTS = $(am_notab_OBJECTS) +@@ -1216,7 +1217,7 @@ notab_LDADD = $(LDADD) + notab_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_notseq_OBJECTS = notseq.$(OBJEXT) + notseq_OBJECTS = $(am_notseq_OBJECTS) +@@ -1224,7 +1225,7 @@ notseq_LDADD = $(LDADD) + notseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_nthseq_OBJECTS = nthseq.$(OBJEXT) + nthseq_OBJECTS = $(am_nthseq_OBJECTS) +@@ -1232,7 +1233,7 @@ nthseq_LDADD = $(LDADD) + nthseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_nthseqset_OBJECTS = nthseqset.$(OBJEXT) + nthseqset_OBJECTS = $(am_nthseqset_OBJECTS) +@@ -1241,14 +1242,14 @@ nthseqset_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_octanol_OBJECTS = octanol.$(OBJEXT) + octanol_OBJECTS = $(am_octanol_OBJECTS) + octanol_LDADD = $(LDADD) + octanol_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_oddcomp_OBJECTS = oddcomp.$(OBJEXT) + oddcomp_OBJECTS = $(am_oddcomp_OBJECTS) +@@ -1256,7 +1257,7 @@ oddcomp_LDADD = $(LDADD) + oddcomp_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_origsplitter_OBJECTS = origsplitter.$(OBJEXT) + origsplitter_OBJECTS = $(am_origsplitter_OBJECTS) +@@ -1265,7 +1266,7 @@ origsplitter_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_origunion_OBJECTS = origunion.$(OBJEXT) + origunion_OBJECTS = $(am_origunion_OBJECTS) + origunion_LDADD = $(LDADD) +@@ -1273,7 +1274,7 @@ origunion_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_palindrome_OBJECTS = palindrome.$(OBJEXT) + palindrome_OBJECTS = $(am_palindrome_OBJECTS) + palindrome_LDADD = $(LDADD) +@@ -1281,14 +1282,14 @@ palindrome_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_pasteseq_OBJECTS = pasteseq.$(OBJEXT) + pasteseq_OBJECTS = $(am_pasteseq_OBJECTS) + pasteseq_LDADD = $(LDADD) + pasteseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_patmatdb_OBJECTS = patmatdb.$(OBJEXT) + patmatdb_OBJECTS = $(am_patmatdb_OBJECTS) +@@ -1296,7 +1297,7 @@ patmatdb_LDADD = $(LDADD) + patmatdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_patmatmotifs_OBJECTS = patmatmotifs.$(OBJEXT) + patmatmotifs_OBJECTS = $(am_patmatmotifs_OBJECTS) +@@ -1305,7 +1306,7 @@ patmatmotifs_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_patmattest_OBJECTS = patmattest.$(OBJEXT) + patmattest_OBJECTS = $(am_patmattest_OBJECTS) + patmattest_LDADD = $(LDADD) +@@ -1313,14 +1314,14 @@ patmattest_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_pepcoil_OBJECTS = pepcoil.$(OBJEXT) + pepcoil_OBJECTS = $(am_pepcoil_OBJECTS) + pepcoil_LDADD = $(LDADD) + pepcoil_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_pepinfo_OBJECTS = pepinfo.$(OBJEXT) + pepinfo_OBJECTS = $(am_pepinfo_OBJECTS) +@@ -1328,7 +1329,7 @@ pepinfo_LDADD = $(LDADD) + pepinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_pepnet_OBJECTS = pepnet.$(OBJEXT) + pepnet_OBJECTS = $(am_pepnet_OBJECTS) +@@ -1336,7 +1337,7 @@ pepnet_LDADD = $(LDADD) + pepnet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_pepstats_OBJECTS = pepstats.$(OBJEXT) + pepstats_OBJECTS = $(am_pepstats_OBJECTS) +@@ -1344,7 +1345,7 @@ pepstats_LDADD = $(LDADD) + pepstats_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_pepwheel_OBJECTS = pepwheel.$(OBJEXT) + pepwheel_OBJECTS = $(am_pepwheel_OBJECTS) +@@ -1352,7 +1353,7 @@ pepwheel_LDADD = $(LDADD) + pepwheel_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_pepwindow_OBJECTS = pepwindow.$(OBJEXT) + pepwindow_OBJECTS = $(am_pepwindow_OBJECTS) +@@ -1361,7 +1362,7 @@ pepwindow_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_pepwindowall_OBJECTS = pepwindowall.$(OBJEXT) + pepwindowall_OBJECTS = $(am_pepwindowall_OBJECTS) + pepwindowall_LDADD = $(LDADD) +@@ -1369,14 +1370,14 @@ pepwindowall_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_plotcon_OBJECTS = plotcon.$(OBJEXT) + plotcon_OBJECTS = $(am_plotcon_OBJECTS) + plotcon_LDADD = $(LDADD) + plotcon_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_plotorf_OBJECTS = plotorf.$(OBJEXT) + plotorf_OBJECTS = $(am_plotorf_OBJECTS) +@@ -1384,7 +1385,7 @@ plotorf_LDADD = $(LDADD) + plotorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_polydot_OBJECTS = polydot.$(OBJEXT) + polydot_OBJECTS = $(am_polydot_OBJECTS) +@@ -1392,7 +1393,7 @@ polydot_LDADD = $(LDADD) + polydot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_preg_OBJECTS = preg.$(OBJEXT) + preg_OBJECTS = $(am_preg_OBJECTS) +@@ -1400,7 +1401,7 @@ preg_LDADD = $(LDADD) + preg_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_prettyplot_OBJECTS = prettyplot.$(OBJEXT) + prettyplot_OBJECTS = $(am_prettyplot_OBJECTS) +@@ -1409,7 +1410,7 @@ prettyplot_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_prettyseq_OBJECTS = prettyseq.$(OBJEXT) + prettyseq_OBJECTS = $(am_prettyseq_OBJECTS) + prettyseq_LDADD = $(LDADD) +@@ -1417,14 +1418,14 @@ prettyseq_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_prima_OBJECTS = prima.$(OBJEXT) + prima_OBJECTS = $(am_prima_OBJECTS) + prima_LDADD = $(LDADD) + prima_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_primers_OBJECTS = primers.$(OBJEXT) + primers_OBJECTS = $(am_primers_OBJECTS) +@@ -1432,7 +1433,7 @@ primers_LDADD = $(LDADD) + primers_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_primersearch_OBJECTS = primersearch.$(OBJEXT) + primersearch_OBJECTS = $(am_primersearch_OBJECTS) +@@ -1441,7 +1442,7 @@ primersearch_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_printsextract_OBJECTS = printsextract.$(OBJEXT) + printsextract_OBJECTS = $(am_printsextract_OBJECTS) + printsextract_LDADD = $(LDADD) +@@ -1449,14 +1450,14 @@ printsextract_DEPENDENCIES = ../nucleus/ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_profit_OBJECTS = profit.$(OBJEXT) + profit_OBJECTS = $(am_profit_OBJECTS) + profit_LDADD = $(LDADD) + profit_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_prophecy_OBJECTS = prophecy.$(OBJEXT) + prophecy_OBJECTS = $(am_prophecy_OBJECTS) +@@ -1464,7 +1465,7 @@ prophecy_LDADD = $(LDADD) + prophecy_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_prophet_OBJECTS = prophet.$(OBJEXT) + prophet_OBJECTS = $(am_prophet_OBJECTS) +@@ -1472,7 +1473,7 @@ prophet_LDADD = $(LDADD) + prophet_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_prosextract_OBJECTS = prosextract.$(OBJEXT) + prosextract_OBJECTS = $(am_prosextract_OBJECTS) +@@ -1481,14 +1482,14 @@ prosextract_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_pscan_OBJECTS = pscan.$(OBJEXT) + pscan_OBJECTS = $(am_pscan_OBJECTS) + pscan_LDADD = $(LDADD) + pscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_psiphi_OBJECTS = psiphi.$(OBJEXT) + psiphi_OBJECTS = $(am_psiphi_OBJECTS) +@@ -1496,7 +1497,7 @@ psiphi_LDADD = $(LDADD) + psiphi_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_rebaseextract_OBJECTS = rebaseextract.$(OBJEXT) + rebaseextract_OBJECTS = $(am_rebaseextract_OBJECTS) +@@ -1505,14 +1506,14 @@ rebaseextract_DEPENDENCIES = ../nucleus/ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_recoder_OBJECTS = recoder.$(OBJEXT) + recoder_OBJECTS = $(am_recoder_OBJECTS) + recoder_LDADD = $(LDADD) + recoder_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_redata_OBJECTS = redata.$(OBJEXT) + redata_OBJECTS = $(am_redata_OBJECTS) +@@ -1520,7 +1521,7 @@ redata_LDADD = $(LDADD) + redata_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_remap_OBJECTS = remap.$(OBJEXT) + remap_OBJECTS = $(am_remap_OBJECTS) +@@ -1528,7 +1529,7 @@ remap_LDADD = $(LDADD) + remap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_restover_OBJECTS = restover.$(OBJEXT) + restover_OBJECTS = $(am_restover_OBJECTS) +@@ -1536,7 +1537,7 @@ restover_LDADD = $(LDADD) + restover_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_restrict_OBJECTS = restrict.$(OBJEXT) + restrict_OBJECTS = $(am_restrict_OBJECTS) +@@ -1544,7 +1545,7 @@ restrict_LDADD = $(LDADD) + restrict_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_revseq_OBJECTS = revseq.$(OBJEXT) + revseq_OBJECTS = $(am_revseq_OBJECTS) +@@ -1552,7 +1553,7 @@ revseq_LDADD = $(LDADD) + revseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_seealso_OBJECTS = seealso.$(OBJEXT) + seealso_OBJECTS = $(am_seealso_OBJECTS) +@@ -1560,7 +1561,7 @@ seealso_LDADD = $(LDADD) + seealso_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_seqinfo_OBJECTS = seqinfo.$(OBJEXT) + seqinfo_OBJECTS = $(am_seqinfo_OBJECTS) +@@ -1568,7 +1569,7 @@ seqinfo_LDADD = $(LDADD) + seqinfo_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_seqmatchall_OBJECTS = seqmatchall.$(OBJEXT) + seqmatchall_OBJECTS = $(am_seqmatchall_OBJECTS) +@@ -1577,14 +1578,14 @@ seqmatchall_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_seqret_OBJECTS = seqret.$(OBJEXT) + seqret_OBJECTS = $(am_seqret_OBJECTS) + seqret_LDADD = $(LDADD) + seqret_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_seqretall_OBJECTS = seqretall.$(OBJEXT) + seqretall_OBJECTS = $(am_seqretall_OBJECTS) +@@ -1593,7 +1594,7 @@ seqretall_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_seqretallfeat_OBJECTS = seqretallfeat.$(OBJEXT) + seqretallfeat_OBJECTS = $(am_seqretallfeat_OBJECTS) + seqretallfeat_LDADD = $(LDADD) +@@ -1601,7 +1602,7 @@ seqretallfeat_DEPENDENCIES = ../nucleus/ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_seqretset_OBJECTS = seqretset.$(OBJEXT) + seqretset_OBJECTS = $(am_seqretset_OBJECTS) + seqretset_LDADD = $(LDADD) +@@ -1609,7 +1610,7 @@ seqretset_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_seqretsetall_OBJECTS = seqretsetall.$(OBJEXT) + seqretsetall_OBJECTS = $(am_seqretsetall_OBJECTS) + seqretsetall_LDADD = $(LDADD) +@@ -1617,7 +1618,7 @@ seqretsetall_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_seqretsingle_OBJECTS = seqretsingle.$(OBJEXT) + seqretsingle_OBJECTS = $(am_seqretsingle_OBJECTS) + seqretsingle_LDADD = $(LDADD) +@@ -1625,7 +1626,7 @@ seqretsingle_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_seqretsplit_OBJECTS = seqretsplit.$(OBJEXT) + seqretsplit_OBJECTS = $(am_seqretsplit_OBJECTS) + seqretsplit_LDADD = $(LDADD) +@@ -1633,7 +1634,7 @@ seqretsplit_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_seqrettype_OBJECTS = seqrettype.$(OBJEXT) + seqrettype_OBJECTS = $(am_seqrettype_OBJECTS) + seqrettype_LDADD = $(LDADD) +@@ -1641,7 +1642,7 @@ seqrettype_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_showalign_OBJECTS = showalign.$(OBJEXT) + showalign_OBJECTS = $(am_showalign_OBJECTS) + showalign_LDADD = $(LDADD) +@@ -1649,14 +1650,14 @@ showalign_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_showdb_OBJECTS = showdb.$(OBJEXT) + showdb_OBJECTS = $(am_showdb_OBJECTS) + showdb_LDADD = $(LDADD) + showdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_showfeat_OBJECTS = showfeat.$(OBJEXT) + showfeat_OBJECTS = $(am_showfeat_OBJECTS) +@@ -1664,7 +1665,7 @@ showfeat_LDADD = $(LDADD) + showfeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_showorf_OBJECTS = showorf.$(OBJEXT) + showorf_OBJECTS = $(am_showorf_OBJECTS) +@@ -1672,7 +1673,7 @@ showorf_LDADD = $(LDADD) + showorf_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_showpep_OBJECTS = showpep.$(OBJEXT) + showpep_OBJECTS = $(am_showpep_OBJECTS) +@@ -1680,7 +1681,7 @@ showpep_LDADD = $(LDADD) + showpep_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_showseq_OBJECTS = showseq.$(OBJEXT) + showseq_OBJECTS = $(am_showseq_OBJECTS) +@@ -1688,7 +1689,7 @@ showseq_LDADD = $(LDADD) + showseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_shuffleseq_OBJECTS = shuffleseq.$(OBJEXT) + shuffleseq_OBJECTS = $(am_shuffleseq_OBJECTS) +@@ -1697,7 +1698,7 @@ shuffleseq_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_sigcleave_OBJECTS = sigcleave.$(OBJEXT) + sigcleave_OBJECTS = $(am_sigcleave_OBJECTS) + sigcleave_LDADD = $(LDADD) +@@ -1705,14 +1706,14 @@ sigcleave_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_silent_OBJECTS = silent.$(OBJEXT) + silent_OBJECTS = $(am_silent_OBJECTS) + silent_LDADD = $(LDADD) + silent_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_sirna_OBJECTS = sirna.$(OBJEXT) + sirna_OBJECTS = $(am_sirna_OBJECTS) +@@ -1720,7 +1721,7 @@ sirna_LDADD = $(LDADD) + sirna_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_sixpack_OBJECTS = sixpack.$(OBJEXT) + sixpack_OBJECTS = $(am_sixpack_OBJECTS) +@@ -1728,7 +1729,7 @@ sixpack_LDADD = $(LDADD) + sixpack_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_sizeseq_OBJECTS = sizeseq.$(OBJEXT) + sizeseq_OBJECTS = $(am_sizeseq_OBJECTS) +@@ -1736,7 +1737,7 @@ sizeseq_LDADD = $(LDADD) + sizeseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_skipredundant_OBJECTS = skipredundant.$(OBJEXT) + skipredundant_OBJECTS = $(am_skipredundant_OBJECTS) +@@ -1745,14 +1746,14 @@ skipredundant_DEPENDENCIES = ../nucleus/ + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_skipseq_OBJECTS = skipseq.$(OBJEXT) + skipseq_OBJECTS = $(am_skipseq_OBJECTS) + skipseq_LDADD = $(LDADD) + skipseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + splitsource_SOURCES = splitsource.c + splitsource_OBJECTS = splitsource.$(OBJEXT) +@@ -1761,14 +1762,14 @@ splitsource_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_splitter_OBJECTS = splitter.$(OBJEXT) + splitter_OBJECTS = $(am_splitter_OBJECTS) + splitter_LDADD = $(LDADD) + splitter_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_sqltest_OBJECTS = sqltest.$(OBJEXT) + sqltest_OBJECTS = $(am_sqltest_OBJECTS) +@@ -1776,7 +1777,7 @@ sqltest_LDADD = $(LDADD) + sqltest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_stretcher_OBJECTS = stretcher.$(OBJEXT) + stretcher_OBJECTS = $(am_stretcher_OBJECTS) +@@ -1785,7 +1786,7 @@ stretcher_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_stssearch_OBJECTS = stssearch.$(OBJEXT) + stssearch_OBJECTS = $(am_stssearch_OBJECTS) + stssearch_LDADD = $(LDADD) +@@ -1793,7 +1794,7 @@ stssearch_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_supermatcher_OBJECTS = supermatcher.$(OBJEXT) + supermatcher_OBJECTS = $(am_supermatcher_OBJECTS) + supermatcher_LDADD = $(LDADD) +@@ -1801,14 +1802,14 @@ supermatcher_DEPENDENCIES = ../nucleus/l + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_syco_OBJECTS = syco.$(OBJEXT) + syco_OBJECTS = $(am_syco_OBJECTS) + syco_LDADD = $(LDADD) + syco_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_tcode_OBJECTS = tcode.$(OBJEXT) + tcode_OBJECTS = $(am_tcode_OBJECTS) +@@ -1816,7 +1817,7 @@ tcode_LDADD = $(LDADD) + tcode_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_testplot_OBJECTS = testplot.$(OBJEXT) + testplot_OBJECTS = $(am_testplot_OBJECTS) +@@ -1824,7 +1825,7 @@ testplot_LDADD = $(LDADD) + testplot_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_textsearch_OBJECTS = textsearch.$(OBJEXT) + textsearch_OBJECTS = $(am_textsearch_OBJECTS) +@@ -1833,7 +1834,7 @@ textsearch_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_tfextract_OBJECTS = tfextract.$(OBJEXT) + tfextract_OBJECTS = $(am_tfextract_OBJECTS) + tfextract_LDADD = $(LDADD) +@@ -1841,14 +1842,14 @@ tfextract_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_tfm_OBJECTS = tfm.$(OBJEXT) + tfm_OBJECTS = $(am_tfm_OBJECTS) + tfm_LDADD = $(LDADD) + tfm_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_tfscan_OBJECTS = tfscan.$(OBJEXT) + tfscan_OBJECTS = $(am_tfscan_OBJECTS) +@@ -1856,7 +1857,7 @@ tfscan_LDADD = $(LDADD) + tfscan_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_tmap_OBJECTS = tmap.$(OBJEXT) + tmap_OBJECTS = $(am_tmap_OBJECTS) +@@ -1864,7 +1865,7 @@ tmap_LDADD = $(LDADD) + tmap_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_tranalign_OBJECTS = tranalign.$(OBJEXT) + tranalign_OBJECTS = $(am_tranalign_OBJECTS) +@@ -1873,14 +1874,14 @@ tranalign_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_transeq_OBJECTS = transeq.$(OBJEXT) + transeq_OBJECTS = $(am_transeq_OBJECTS) + transeq_LDADD = $(LDADD) + transeq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_treetypedisplay_OBJECTS = treetypedisplay.$(OBJEXT) + treetypedisplay_OBJECTS = $(am_treetypedisplay_OBJECTS) +@@ -1889,14 +1890,14 @@ treetypedisplay_DEPENDENCIES = ../nucleu + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_trimest_OBJECTS = trimest.$(OBJEXT) + trimest_OBJECTS = $(am_trimest_OBJECTS) + trimest_LDADD = $(LDADD) + trimest_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_trimseq_OBJECTS = trimseq.$(OBJEXT) + trimseq_OBJECTS = $(am_trimseq_OBJECTS) +@@ -1904,7 +1905,7 @@ trimseq_LDADD = $(LDADD) + trimseq_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_trimspace_OBJECTS = trimspace.$(OBJEXT) + trimspace_OBJECTS = $(am_trimspace_OBJECTS) +@@ -1913,14 +1914,14 @@ trimspace_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_twofeat_OBJECTS = twofeat.$(OBJEXT) + twofeat_OBJECTS = $(am_twofeat_OBJECTS) + twofeat_LDADD = $(LDADD) + twofeat_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_union_OBJECTS = union.$(OBJEXT) + union_OBJECTS = $(am_union_OBJECTS) +@@ -1928,7 +1929,7 @@ union_LDADD = $(LDADD) + union_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_vectorstrip_OBJECTS = vectorstrip.$(OBJEXT) + vectorstrip_OBJECTS = $(am_vectorstrip_OBJECTS) +@@ -1937,14 +1938,14 @@ vectorstrip_DEPENDENCIES = ../nucleus/li + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_water_OBJECTS = water.$(OBJEXT) + water_OBJECTS = $(am_water_OBJECTS) + water_LDADD = $(LDADD) + water_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_whichdb_OBJECTS = whichdb.$(OBJEXT) + whichdb_OBJECTS = $(am_whichdb_OBJECTS) +@@ -1952,7 +1953,7 @@ whichdb_LDADD = $(LDADD) + whichdb_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_wobble_OBJECTS = wobble.$(OBJEXT) + wobble_OBJECTS = $(am_wobble_OBJECTS) +@@ -1960,7 +1961,7 @@ wobble_LDADD = $(LDADD) + wobble_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_wordcount_OBJECTS = wordcount.$(OBJEXT) + wordcount_OBJECTS = $(am_wordcount_OBJECTS) +@@ -1969,7 +1970,7 @@ wordcount_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_wordfinder_OBJECTS = wordfinder.$(OBJEXT) + wordfinder_OBJECTS = $(am_wordfinder_OBJECTS) + wordfinder_LDADD = $(LDADD) +@@ -1977,7 +1978,7 @@ wordfinder_DEPENDENCIES = ../nucleus/lib + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_wordmatch_OBJECTS = wordmatch.$(OBJEXT) + wordmatch_OBJECTS = $(am_wordmatch_OBJECTS) + wordmatch_LDADD = $(LDADD) +@@ -1985,14 +1986,14 @@ wordmatch_DEPENDENCIES = ../nucleus/libn + ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la \ + ../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la \ + ../ajax/core/libajax.la $(EXTRA_LDS) \ +- ../plplot/libeplplot.la $(am__DEPENDENCIES_1) ++ $(am__DEPENDENCIES_1) + am_wossname_OBJECTS = wossname.$(OBJEXT) + wossname_OBJECTS = $(am_wossname_OBJECTS) + wossname_LDADD = $(LDADD) + wossname_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + am_yank_OBJECTS = yank.$(OBJEXT) + yank_OBJECTS = $(am_yank_OBJECTS) +@@ -2000,7 +2001,7 @@ yank_LDADD = $(LDADD) + yank_DEPENDENCIES = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ +- $(EXTRA_LDS) ../plplot/libeplplot.la \ ++ $(EXTRA_LDS) \ + $(am__DEPENDENCIES_1) + DEFAULT_INCLUDES = -I.@am__isrc@ + depcomp = $(SHELL) $(top_srcdir)/depcomp +@@ -2328,6 +2329,8 @@ PCRE_MINOR = @PCRE_MINOR@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -2410,12 +2413,12 @@ EXTRA_DIST = emboss.default.template + @ISAIXIA64_TRUE@@ISSHARED_TRUE@ -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre -lezlib + + AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS) $(DEVWARN_CFLAGS) +-@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre ++@ESYSTEMLIBS_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot + INCLUDES = -I$(top_srcdir)/nucleus \ +- $(EXTRA_INCLUDES) \ ++ $(EXTRA_INCLUDES) $(PLPLOT_CFLAGS) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ + -I$(top_srcdir)/ajax/ensembl -I$(top_srcdir)/ajax/ajaxdb \ +- -I$(top_srcdir)/ajax/acd -I$(top_srcdir)/plplot ++ -I$(top_srcdir)/ajax/acd + + aaindexextract_SOURCES = aaindexextract.c + abiview_SOURCES = abiview.c +@@ -2643,12 +2646,12 @@ seqrettype_SOURCES = seqrettype.c + sqltest_SOURCES = sqltest.c + testplot_SOURCES = testplot.c + treetypedisplay_SOURCES = treetypedisplay.c +-@ESYSTEMLIBS_FALSE@EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ++@ESYSTEMLIBS_FALSE@EXTRA_LDS = ../ajax/zlib/libezlib.la ../ajax/expat/libeexpat.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la + LDADD = ../nucleus/libnucleus.la ../ajax/acd/libacd.la \ + ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la \ + ../ajax/graphics/libajaxg.la ../ajax/core/libajax.la \ + $(EXTRA_LDS) \ +- ../plplot/libeplplot.la \ ++ $(PLPLOT_LIBS) \ + $(XLIB) + + pkgdata_DATA = emboss.default.template +diff -up EMBOSS-6.3.1/m4/plplot.m4.system-plplot EMBOSS-6.3.1/m4/plplot.m4 +--- EMBOSS-6.3.1/m4/plplot.m4.system-plplot 2010-08-03 08:01:37.989233208 -0400 ++++ EMBOSS-6.3.1/m4/plplot.m4 2010-08-03 08:01:37.989233208 -0400 +@@ -0,0 +1,84 @@ ++dnl @synopsis CHECK_PLPLOT([PLPLOT_LIBDIR, PLPLOT_INCDIR, ++dnl [ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]]) ++dnl This macro figures out if the PlPlot library and header files ++dnl are installed. ++dnl You may wish to use these variables in your default LIBS and CFLAGS: ++dnl ++dnl LIBS="$PLPLOT_LIBS $LIBS" ++dnl CFLAGS="$CFLAGS $PLPLOT_CFLAGS" ++dnl ++dnl ACTION-IF-FOUND is a list of shell commands to run if PlPlot ++dnl is found (HAVE_PLPLOT is defined first), and ACTION-IF-NOT-FOUND ++dnl is a list of commands to run it if it is not found. ++dnl ++dnl @author Emmanuel Bertin ++ ++AC_DEFUN([CHECK_PLPLOT], [ ++AC_REQUIRE([AC_CANONICAL_HOST]) ++ ++PLPLOT_LIBS="" ++OLIBS="$LIBS" ++LIBS="" ++ ++check_plplot_ok=yes ++check_plplotpkg_ok=no ++if test x$2 = x && test x$1 = x; then ++ AC_MSG_CHECKING([for PLPlot pkg-config info]) ++ if pkg-config --exists plplotd; then ++ AC_MSG_RESULT([yes]) ++ [PLPLOT_CFLAGS=`pkg-config --cflags plplotd`] ++ [PLPLOT_LIBS=`pkg-config --libs plplotd`] ++ AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.]) ++ AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.]) ++ check_plplotpkg_ok=yes ++ else ++ AC_MSG_RESULT([no]) ++ fi ++fi ++if test x$check_plplotpkg_ok = xno; then ++ if test x$2 = x; then ++ AC_CHECK_HEADER(plplot.h, [check_plplothead_ok=yes], [check_plplothead_ok=no]) ++ if test x$check_plplothead_ok = xyes; then ++ AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.]) ++ AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.]) ++ else ++ AC_CHECK_HEADER(plplot/plplot.h, ++ [check_plplothead_ok=yes], [check_plplothead_ok=no]) ++ if test x$check_plplothead_ok = xyes; then ++ AC_DEFINE(PLPLOT_H, "plplot/plplot.h", [PLPlot header filename.]) ++ AC_DEFINE(PLPLOTP_H, "plplot/plplotP.h", ++ [PLPlot private header filename.]) ++ else ++ check_plplot_ok=no ++ fi ++ fi ++ else ++ AC_CHECK_HEADER($2/plplot.h, ++ [check_plplothead_ok=yes], [check_plplothead_ok=no]) ++ if test x$check_plplothead_ok = xyes; then ++ AC_DEFINE(PLPLOT_H, "plplot.h", [PLPlot header filename.]) ++ AC_DEFINE(PLPLOTP_H, "plplotP.h", [PLPlot private header filename.]) ++ [PLPLOT_CFLAGS="-I$2"] ++ else ++ check_plplot_ok=no ++ fi ++ fi ++ if test x$1 = x; then ++ AC_CHECK_LIB(plplotd, c_plinit,, [check_plplot_ok=no]) ++ [PLPLOT_LIBS="-lplplotd"] ++ else ++ AC_CHECK_LIB(plplotd, c_plinit,, [check_plplot_ok=no], [-L$1]) ++ [PLPLOT_LIBS="-L$1 -lplplotd"] ++ fi ++fi ++ ++LIBS="$OLIBS" ++if test x$check_plplot_ok = xyes; then ++ AC_SUBST(PLPLOT_CFLAGS) ++ AC_SUBST(PLPLOT_LIBS) ++ AC_DEFINE(HAVE_PLPLOT,1, ++ [Define if you have the PLPlot libraries and header files.]) ++fi ++ ++])dnl CHECK_PLPLOT ++ +diff -up EMBOSS-6.3.1/Makefile.am.system-plplot EMBOSS-6.3.1/Makefile.am +--- EMBOSS-6.3.1/Makefile.am.system-plplot 2010-01-11 08:15:41.000000000 -0500 ++++ EMBOSS-6.3.1/Makefile.am 2010-08-03 08:01:37.989233208 -0400 +@@ -5,7 +5,7 @@ ACLOCAL_AMFLAGS = -I m4 + + AUTOMAKE_OPTIONS = gnits + +-SUBDIRS = plplot ajax nucleus emboss test doc jemboss ++SUBDIRS = ajax nucleus emboss test doc jemboss + + # AJAX_FIXED_ROOT = \"`pwd`/emboss/acd\" + +@@ -20,6 +20,5 @@ dist-hook: + tar cBf - test | ( cd $(distdir); tar xBf - ; rm -rf test/CVS test/*/CVS ) + tar cBf - emboss/acd | ( cd $(distdir); tar xBf - ; cd emboss/acd; rm -rf CVS ) + tar cBf - emboss/data | ( cd $(distdir); tar xBf - ; cd emboss/data; rm -rf CVS */CVS */*/CVS ) +- tar cBf - plplot/lib | ( cd $(distdir); tar xBf - ; find plplot -name CVS | xargs rm -rf ) + tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; ) + tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf ) +diff -up EMBOSS-6.3.1/Makefile.in.system-plplot EMBOSS-6.3.1/Makefile.in +--- EMBOSS-6.3.1/Makefile.in.system-plplot 2010-07-19 07:55:42.000000000 -0400 ++++ EMBOSS-6.3.1/Makefile.in 2010-08-03 08:01:37.989233208 -0400 +@@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ +@@ -182,6 +183,8 @@ PCRE_MINOR = @PCRE_MINOR@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -257,7 +260,7 @@ top_builddir = @top_builddir@ + top_srcdir = @top_srcdir@ + ACLOCAL_AMFLAGS = -I m4 + AUTOMAKE_OPTIONS = gnits +-SUBDIRS = plplot ajax nucleus emboss test doc jemboss ++SUBDIRS = ajax nucleus emboss test doc jemboss + + # AJAX_FIXED_ROOT = \"`pwd`/emboss/acd\" + +@@ -757,7 +760,6 @@ dist-hook: + tar cBf - test | ( cd $(distdir); tar xBf - ; rm -rf test/CVS test/*/CVS ) + tar cBf - emboss/acd | ( cd $(distdir); tar xBf - ; cd emboss/acd; rm -rf CVS ) + tar cBf - emboss/data | ( cd $(distdir); tar xBf - ; cd emboss/data; rm -rf CVS */CVS */*/CVS ) +- tar cBf - plplot/lib | ( cd $(distdir); tar xBf - ; find plplot -name CVS | xargs rm -rf ) + tar cBf - doc | ( cd $(distdir); tar xBf - ; find doc -name CVS | xargs rm -rf; ) + tar cBf - jemboss | ( cd $(distdir); tar xBf - ; find jemboss -name CVS | xargs rm -rf; find jemboss -name Makefile | xargs rm -rf; find jemboss -name .cvsignore | xargs rm -rf ) + +diff -up EMBOSS-6.3.1/nucleus/Makefile.am.system-plplot EMBOSS-6.3.1/nucleus/Makefile.am +--- EMBOSS-6.3.1/nucleus/Makefile.am.system-plplot 2010-08-03 08:01:37.969108470 -0400 ++++ EMBOSS-6.3.1/nucleus/Makefile.am 2010-08-03 08:01:37.990233208 -0400 +@@ -19,12 +19,12 @@ CYGWIN_LIBS = -L../plplot -L../ajax/pcre + -lezlib -leplplot + else + if !ESYSTEMLIBS +-EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre ++EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot + endif + endif + + +-INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \ ++INCLUDES = $(PLPLOT_CFLAGS) $(X_CFLAGS) -I$(srcdir)/ \ + -I$(top_srcdir)/ajax \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ +diff -up EMBOSS-6.3.1/nucleus/Makefile.in.system-plplot EMBOSS-6.3.1/nucleus/Makefile.in +--- EMBOSS-6.3.1/nucleus/Makefile.in.system-plplot 2010-08-03 08:01:37.969108470 -0400 ++++ EMBOSS-6.3.1/nucleus/Makefile.in 2010-08-03 08:01:37.990233208 -0400 +@@ -42,7 +42,8 @@ ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 + am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ + $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/hpdf.m4 \ + $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ +- $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/pngdriver.m4 \ ++ $(top_srcdir)/m4/mysql.m4 $(top_srcdir)/m4/plplot.m4 \ ++ $(top_srcdir)/m4/pngdriver.m4 \ + $(top_srcdir)/m4/postgresql.m4 $(top_srcdir)/m4/sgi.m4 \ + $(top_srcdir)/configure.in + am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ +@@ -178,6 +179,8 @@ PCRE_MINOR = @PCRE_MINOR@ + PCRE_POSIXLIB_VERSION = @PCRE_POSIXLIB_VERSION@ + PCRE_VERSION = @PCRE_VERSION@ + PG_CONFIG = @PG_CONFIG@ ++PLPLOT_CFLAGS = @PLPLOT_CFLAGS@ ++PLPLOT_LIBS = @PLPLOT_LIBS@ + POSIX_MALLOC_THRESHOLD = @POSIX_MALLOC_THRESHOLD@ + POSTGRESQL_CFLAGS = @POSTGRESQL_CFLAGS@ + POSTGRESQL_LDFLAGS = @POSTGRESQL_LDFLAGS@ +@@ -262,8 +265,8 @@ AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS) + @ISCYGWIN_TRUE@-L../ajax/acd -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre \ + @ISCYGWIN_TRUE@-lezlib -leplplot + +-@ESYSTEMLIBS_FALSE@@ISCYGWIN_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre +-INCLUDES = -I$(top_srcdir)/plplot $(X_CFLAGS) -I$(srcdir)/ \ ++@ESYSTEMLIBS_FALSE@@ISCYGWIN_FALSE@EXTRA_INCLUDES = -I$(top_srcdir)/ajax/expat -I$(top_srcdir)/ajax/zlib -I$(top_srcdir)/ajax/pcre -I$(top_srcdir)/plplot ++INCLUDES = $(PLPLOT_CFLAGS) $(X_CFLAGS) -I$(srcdir)/ \ + -I$(top_srcdir)/ajax \ + $(EXTRA_INCLUDES) \ + -I$(top_srcdir)/ajax/core -I$(top_srcdir)/ajax/graphics \ diff --git a/EMBOSS-fedora.patch b/EMBOSS-fedora.patch index 857ced4..ed1725f 100644 --- a/EMBOSS-fedora.patch +++ b/EMBOSS-fedora.patch @@ -1,9 +1,10 @@ ---- jemboss/resources/jemboss.properties.fedora 2008-05-02 15:27:28.000000000 +0200 -+++ jemboss/resources/jemboss.properties 2009-04-16 20:11:28.000000000 +0200 -@@ -5,8 +5,8 @@ +diff -up jemboss/resources/jemboss.properties.fedora jemboss/resources/jemboss.properties +--- jemboss/resources/jemboss.properties.fedora 2010-07-02 07:19:55.000000000 -0400 ++++ jemboss/resources/jemboss.properties 2010-08-02 17:18:45.298144756 -0400 +@@ -4,8 +4,8 @@ server.public=https://jemboss.hgmp.mrc.a + server.private=https://jemboss.hgmp.mrc.ac.uk:8443/axis/services service.public=JembossAuthServer service.private=JembossAuthServer - plplot=/packages/emboss/STABLE/share/EMBOSS/ -embossData=/packages/emboss/STABLE/share/EMBOSS/data/ -embossBin=/packages/emboss/STABLE/bin/ +embossData=/usr/share/EMBOSS/data/ diff --git a/EMBOSS.spec b/EMBOSS.spec index 6f06f0d..fcfb294 100644 --- a/EMBOSS.spec +++ b/EMBOSS.spec @@ -17,8 +17,8 @@ %define emhome %{_datadir}/EMBOSS Name: EMBOSS -Version: 6.2.0 -Release: 4%{?dist} +Version: 6.3.1 +Release: 1%{?dist} Summary: The European Molecular Biology Open Software Suite Group: Applications/Engineering @@ -38,18 +38,18 @@ Source1: ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README.fixes Source2: jemboss.desktop %endif # Upstream patch -Patch0: ftp://emboss.open-bio.org/pub/EMBOSS/fixes/patches/patch-1-18.gz +Patch0: ftp://emboss.open-bio.org/pub/EMBOSS/fixes/patches/patch-1-1.gz # Use system-wide pcre. Sent upstream. -Patch1: EMBOSS-6.2.0-system-pcre.patch -# Use system-wide zlib. -Patch2: EMBOSS-6.2.0-system-zlib.patch +Patch1: EMBOSS-6.3.1-system-pcre.patch # Use system-wide plplot -Patch3: EMBOSS-6.2.0-system-plplot.patch +Patch3: EMBOSS-6.3.1-system-plplot.patch # Use system-wide expat -Patch4: EMBOSS-6.2.0-system-expat.patch +Patch4: EMBOSS-6.3.1-system-expat.patch #Fedora-specific. Not sent upstream. Patch5: %{name}-fedora.patch +Patch6: EMBOSS-6.3.1-prevent-autotooling.patch +Patch7: EMBOSS-6.3.1-system-hack.patch BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) BuildRequires: gd-devel @@ -58,6 +58,7 @@ BuildRequires: pcre-devel BuildRequires: zlib-devel BuildRequires: plplot-devel BuildRequires: expat-devel +BuildRequires: libharu-devel %if %{with jemboss} BuildRequires: ant BuildRequires: desktop-file-utils @@ -129,10 +130,11 @@ http://www.hgmp.mrc.ac.uk/Software/EMBOSS/Jemboss/ %setup -q %patch0 -p1 %patch1 -p1 -b .system-pcre -%patch2 -p1 -b .system-zlib %patch3 -p1 -b .system-plplot %patch4 -p1 -b .system-expat %patch5 -p0 -b .fedora +%patch6 -p1 -b .autobarf +%patch7 -p1 -b .system # Remove bundled plplot, expat, pcre and zlib to make sure that system versions are used rm -rf plplot/ @@ -178,6 +180,7 @@ export PATH=$PATH:%{_java}/bin/ --with-auth \ --with-thread \ --includedir=%{_includedir}/EMBOSS \ + --enable-systemlibs \ %ifarch ppc64 sparc64 x86_64 --enable-64 \ %endif @@ -230,9 +233,9 @@ pushd $RPM_BUILD_ROOT%{_datadir}/EMBOSS/jemboss/utils chmod +x install-jemboss-server.sh keys.sh makeFileManagerJNLP.sh makeJar.csh \ makeJNLP.sh popd -pushd $RPM_BUILD_ROOT%{_datadir}/EMBOSS/jemboss/api -chmod +x getClasses.pl makeDocs.csh -popd +# pushd $RPM_BUILD_ROOT%{_datadir}/EMBOSS/jemboss/api +# chmod +x getClasses.pl makeDocs.csh +# popd #rename conflicting binaries mv $RPM_BUILD_ROOT%{_bindir}/chaos $RPM_BUILD_ROOT%{_bindir}/em_chaos @@ -290,6 +293,9 @@ rm -rf $RPM_BUILD_ROOT %changelog +* Mon Aug 02 2010 Tom "spot" Callaway - 6.3.1-1 +- update to 6.3.1 + * Wed Jul 07 2010 Tom "spot" Callaway - 6.2.0-4 - include license information in EMBOSS-libs package, instead of EMBOSS since EMBOSS-libs always gets pulled in when EMBOSS is installed diff --git a/README.fixes b/README.fixes index dd4d11e..3c56d79 100644 --- a/README.fixes +++ b/README.fixes @@ -1,160 +1,9 @@ The files in this directory are bugfix replacements for files in -the EMBOSS-6.2.0 distribution. Just drop the replacement files in +the EMBOSS-6.3.1 distribution. Just drop the replacement files in the location shown and redo the 'make install.' -Fix 1. EMBOSS-6.2.0/emboss/jembossctl.c - EMBOSS-6.2.0/jemboss/lib/jemboss.jar - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/filetree/DragTree.java - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/filetree/RemoteDragTree.java - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/form/BuildJembossForm.java - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/gui/ShowResultSet.java - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/JembossParams.java - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/programs/RunEmbossApplication2.java - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/server/JembossAuthServer.java - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/server/JembossServer.java - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/server/JembossThread.java - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/soap/AuthPopup.java - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/soap/JembossRun.java - EMBOSS-6.2.0/jemboss/org/emboss/jemboss/soap/PrivateRequest.java - EMBOSS-6.2.0/jemboss/utils/install-jemboss-server.sh +Fix 1. EMBOSS-6.3.1/configure + EMBOSS-6.3.1/m4/mysql.m4 -26 Feb 2010: Various Jemboss fixes including allowing multiple - parameters to "wossname" and reporting of stderr - output - - -Fix 2. EMBOSS-6.2.0/emboss/acd/jaspextract.acd - EMBOSS-6.2.0/emboss/acd/jaspscan.acd - EMBOSS-6.2.0/emboss/jaspextract.c - EMBOSS-6.2.0/emboss/jaspscan.c - -26 Feb 2010: jaspextract and jaspscan can use the latest-format data at - http://jaspar.genereg.net/html/DOWNLOAD/Archive.zip - jaspextract uses the data in the "all_data/FlatFileDir" - directory. It is advisable to clear delete any old data files - from your EMBOSS data file area e.g. from the - /usr/local/emboss/share/EMBOSS/data/JASPAR_* directories - - -Fix 3. EMBOSS-6.2.0/emboss/emma.c - -26 Feb 2010: Takes note once again of any EMBOSS_CLUSTALW environment variable - setting. - - -Fix 4. EMBOSS-6.2.0/emboss/acd/trimseq.acd - -26 Feb 2010: Place limit on the maximum window size - - -Fix 5. EMBOSS-6.2.0/ajax/core/ajpat.c - EMBOSS-6.2.0/nucleus/embpat.c - -26 Feb 2010: Fix crash when excessive mismatches requested in one of the - fuzzpro search algorithms. - - -Fix 6. EMBOSS-6.2.0/emboss/coderet.c - EMBOSS-6.2.0/emboss/splitter.c - -26 Feb 2010: Fix crash if no features in the source sequence - - -Fix 7. EMBOSS-6.2.0/emboss/matcher.c - -26 Feb 2010: Fix memory allocation problem - - -Fix 8. EMBOSS-6.2.0/ajax/core/ajseqread.c - EMBOSS-6.2.0/ajax/core/ajseqwrite.c - -01-Mar-2010: Fix sequence format 'refseqp' to be a valid protein - output format and to preserve more fields from refseqp input. - - -Fix 9. EMBOSS-6.2.0/ajax/core/ajlist.c - EMBOSS-6.2.0/ajax/core/ajlist.h - EMBOSS-6.2.0/emboss/showfeat.c - -01-Mar-2010: Fix showfeat sorted feature output to correctly sort exons - for 'join' feature locations. - - -Fix 10.EMBOSS-6.2.0/ajax/graphics/ajgraph.c - EMBOSS-6.2.0/emboss/prettyplot.c - -01-Mar-2010: Fix PNG graphics output format to remove large blank - margins added by the plplot driver. Improve prettyplot - output to better centre sequence characters within boxes. - - -Fix 11.EMBOSS-6.2.0/emboss/recoder.c - EMBOSS-6.2.0/emboss/remap.c - EMBOSS-6.2.0/emboss/restrict.c - EMBOSS-6.2.0/emboss/showseq.c - EMBOSS-6.2.0/emboss/silent.c - -01-Mar-2010: Skip bad enzyme file records - - -Fix 12.EMBOSS-6.2.0/emboss/showpep.c - EMBOSS-6.2.0/emboss/showseq.c - -01-Mar-2010: Correct HTML output closing tag. - - -Fix 13.EMBOSS-6.2.0/ajax/core/ajfeat.c - -01-Mar-2010: Remove warnings for accessions and repeat features in - ensembl format EMBL files. - - -Fix 14.EMBOSS-6.2.0/emboss/acd/cirdna.acd - EMBOSS-6.2.0/emboss/acd/knowntypes.standard - -01-Mar-2010: Fix description of cirdna input - - -Fix 15.EMBOSS-6.2.0/emboss/acd/extractfeat.acd - EMBOSS-6.2.0/emboss/acd/maskfeat.acd - EMBOSS-6.2.0/emboss/acd/showfeat.acd - EMBOSS-6.2.0/emboss/acd/showpep.acd - EMBOSS-6.2.0/emboss/acd/showseq.acd - EMBOSS-6.2.0/emboss/acd/twofeat.acd - EMBOSS-6.2.0/doc/programs/html/extractfeat.html - EMBOSS-6.2.0/doc/programs/html/maskfeat.html - EMBOSS-6.2.0/doc/programs/html/showfeat.html - EMBOSS-6.2.0/doc/programs/html/showpep.html - EMBOSS-6.2.0/doc/programs/html/showseq.html - EMBOSS-6.2.0/doc/programs/html/twofeat.html - EMBOSS-6.2.0/doc/programs/text/extractfeat.txt - EMBOSS-6.2.0/doc/programs/text/maskfeat.txt - EMBOSS-6.2.0/doc/programs/text/showfeat.txt - EMBOSS-6.2.0/doc/programs/text/showpep.txt - EMBOSS-6.2.0/doc/programs/text/showseq.txt - EMBOSS-6.2.0/doc/programs/text/twofeat.txt - -01-Mar-2010: Fix URLs for EMBL/GenBank and SwissProt feature table - descriptions in help and documentation. - - -Fix 16.EMBOSS-6.2.0/emboss/acd/remap.acd - EMBOSS-6.2.0/emboss/acd/restover.acd - EMBOSS-6.2.0/emboss/acd/restrict.acd - EMBOSS-6.2.0/emboss/acd/showseq.acd - -01-Mar-2010: Remove artificial upper limit on number of restriction cuts - - -Fix 17.EMBOSS-6.2.0/doc/programs/html/density.2.density.gif - EMBOSS-6.2.0/doc/programs/html/density.3.density.gif - EMBOSS-6.2.0/doc/programs/html/Makefile.am - EMBOSS-6.2.0/doc/programs/html/Makefile.in - EMBOSS-6.2.0/doc/programs/html/Makefile - -01-Mar-2010: Missing images for density usage examples - - -Fix 18. EMBOSS-6.2.0/ajax/core/ajsys.c - -02-Mar-2010: Add .exe extension when searching for CYGWIN executables +21 Jul 2010: Addresses a problem whereby, in some circumstances, inclusion of + hpdf support prevented inclusion of MySQL support. diff --git a/sources b/sources index 030cbf8..4e461f9 100644 --- a/sources +++ b/sources @@ -1,2 +1,2 @@ -2e2937dd0493814ca0f64981f4c79319 EMBOSS-6.2.0.tar.gz -562038e587099462869c45fda2e9628d patch-1-18.gz +4d4cc882ce44ad5e44c38231c9f3ae53 patch-1-1.gz +04d1179b6261103a77e396d54f8ac38e EMBOSS-6.3.1.tar.gz